Wall clock time and date at job start Tue Mar 31 2020 17:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00144 * 2 1 4 4 O 1.21492 * 119.99768 * 185.37892 * 3 2 1 5 5 C 1.48326 * 119.99741 * 5.37635 * 3 2 1 6 6 N 1.31494 * 127.15676 * 5.89379 * 5 3 2 7 7 O 1.21429 * 111.52846 * 179.97438 * 6 5 3 8 8 C 1.33194 * 111.56788 * 359.96387 * 7 6 5 9 9 C 1.35370 * 106.63610 * 359.80501 * 8 7 6 10 10 C 1.50064 * 124.93924 * 179.41008 * 9 8 7 11 11 C 1.53558 * 108.29309 * 344.49642 * 10 9 8 12 12 C 1.53108 * 109.50610 * 48.95683 * 11 10 9 13 13 C 1.50606 * 129.60104 * 180.18774 * 8 7 6 14 14 C 1.46503 * 119.99922 * 180.02562 * 2 1 3 15 15 H 1.09005 * 109.47220 * 180.02562 * 14 2 1 16 16 C 1.53000 * 109.47078 * 299.99725 * 14 2 1 17 17 N 1.46496 * 109.47353 * 305.00465 * 16 14 2 18 18 C 1.36936 * 120.00546 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99717 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00436 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99635 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99901 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47511 * 60.00031 * 22 20 18 24 24 H 1.48507 * 109.47188 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47481 * 300.00082 * 22 20 18 26 26 C 1.52997 * 109.47400 * 59.99960 * 14 2 1 27 27 C 1.53000 * 117.49652 * 248.74722 * 26 14 2 28 28 C 1.53006 * 117.50048 * 180.08982 * 26 14 2 29 29 H 1.09000 * 109.47027 * 275.36186 * 1 2 3 30 30 H 1.08996 * 109.47338 * 35.37014 * 1 2 3 31 31 H 1.09003 * 109.46868 * 155.36601 * 1 2 3 32 32 H 1.09003 * 109.87661 * 224.68124 * 10 9 8 33 33 H 1.08996 * 109.48350 * 104.08611 * 10 9 8 34 34 H 1.08998 * 109.46462 * 288.94551 * 11 10 9 35 35 H 1.09001 * 109.46441 * 168.96422 * 11 10 9 36 36 H 1.08994 * 109.42746 * 170.06118 * 12 11 10 37 37 H 1.08996 * 109.38460 * 50.19022 * 12 11 10 38 38 H 1.08996 * 109.69273 * 282.91782 * 13 8 7 39 39 H 1.08997 * 109.69363 * 43.47275 * 13 8 7 40 40 H 1.09001 * 109.47288 * 185.00195 * 16 14 2 41 41 H 1.09002 * 109.46766 * 65.00037 * 16 14 2 42 42 H 0.97006 * 119.99930 * 359.97438 * 17 16 14 43 43 H 0.97000 * 119.99886 * 180.02562 * 21 20 18 44 44 H 1.09000 * 115.54944 * 34.41284 * 26 14 2 45 45 H 1.08995 * 117.50546 * 0.02562 * 27 26 14 46 46 H 1.09004 * 117.49724 * 145.01739 * 27 26 14 47 47 H 1.08996 * 117.49717 * 214.97986 * 28 26 14 48 48 H 1.08994 * 117.49394 * 359.97346 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3498 1.1694 -0.0986 5 6 1.4021 2.4489 0.1204 6 7 0.1156 2.6077 0.3408 7 8 -0.1868 3.7829 0.3875 8 6 0.8727 4.5687 0.2027 9 6 1.9367 3.7502 0.0285 10 6 3.3423 4.2101 -0.2255 11 6 3.2987 5.6891 -0.6363 12 6 2.4332 6.4701 0.3562 13 6 0.9614 6.0720 0.1849 14 6 2.1975 -1.2688 -0.0006 15 1 3.2692 -1.0696 0.0000 16 6 1.8279 -2.0716 1.2484 17 7 2.0706 -1.2574 2.4418 18 6 1.8113 -1.7700 3.6848 19 1 1.4273 -2.7745 3.7853 20 6 2.0418 -0.9987 4.8157 21 7 2.5101 0.2251 4.6932 22 14 1.6873 -1.6979 6.5112 23 1 2.5154 -2.9111 6.7296 24 1 2.0158 -0.6826 7.5440 25 1 0.2494 -2.0561 6.6083 26 6 1.8279 -2.0705 -1.2501 27 6 1.0115 -3.3494 -1.0530 28 6 2.4913 -3.4369 -1.4347 29 1 -0.3633 0.0960 1.0232 30 1 -0.3634 0.8379 -0.5948 31 1 -0.3633 -0.9342 -0.4284 32 1 3.7867 3.6191 -1.0263 33 1 3.9314 4.0987 0.6849 34 1 2.8732 5.7759 -1.6361 35 1 4.3098 6.0963 -0.6354 36 1 2.5437 7.5385 0.1710 37 1 2.7542 6.2432 1.3727 38 1 0.5867 6.4508 -0.7660 39 1 0.3711 6.4846 1.0030 40 1 2.4377 -2.9739 1.2939 41 1 0.7741 -2.3469 1.2046 42 1 2.4158 -0.3554 2.3516 43 1 2.6715 0.7640 5.4835 44 1 1.6316 -1.4812 -2.1458 45 1 0.7373 -3.6194 -0.0332 46 1 0.2784 -3.6017 -1.8192 47 1 2.7312 -3.7466 -2.4518 48 1 3.1914 -3.7643 -0.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725467836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:54 Heat of formation + Delta-G solvation = 71.703786 kcal Electronic energy + Delta-G solvation = -30036.307802 eV Core-core repulsion = 26096.107950 eV Total energy + Delta-G solvation = -3940.199852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.90981 -39.82915 -37.91772 -37.52817 -34.99354 -34.15358 -33.52535 -31.12207 -30.96236 -30.22814 -28.22562 -26.51541 -25.02249 -24.35700 -23.37323 -22.77360 -22.51691 -21.89742 -20.28784 -19.49287 -18.58797 -17.70741 -17.13293 -17.05723 -16.48530 -16.18429 -15.21056 -15.11146 -14.90991 -14.41962 -14.10679 -14.07871 -13.87111 -13.56862 -13.28335 -13.15898 -13.13526 -12.87376 -12.63585 -12.43238 -12.21277 -12.07227 -11.52057 -11.28685 -11.16499 -11.08244 -11.04418 -11.00249 -10.77409 -10.76424 -10.73633 -10.35888 -10.11434 -10.01379 -9.82379 -9.67803 -9.61650 -8.99081 -8.84035 -8.25775 -6.88433 -5.70941 -3.00675 1.34093 1.84172 2.94460 3.13527 3.45885 3.49478 3.49879 3.51192 3.96972 4.16205 4.45244 4.60432 4.63904 4.68092 4.86837 4.94180 4.96869 5.06687 5.12003 5.12165 5.29414 5.31995 5.38474 5.45602 5.56923 5.59859 5.65121 5.67959 5.76070 5.79723 5.83330 5.88814 5.90966 5.95482 6.00438 6.02785 6.15308 6.26713 6.28651 6.30682 6.32627 6.39739 6.45591 6.70821 6.95632 7.63717 7.71320 8.15689 8.43851 8.46022 9.57296 10.15195 10.50220 11.51184 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.004513 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.227175 B = 6203.041513 C = 8181.738334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.578 5.578 3 C 0.601 3.399 4 O -0.524 6.524 5 C -0.004 4.004 6 N -0.326 5.326 7 O 0.120 5.880 8 C -0.046 4.046 9 C -0.149 4.149 10 C -0.045 4.045 11 C -0.122 4.122 12 C -0.120 4.120 13 C -0.032 4.032 14 C 0.162 3.838 15 H 0.105 0.895 16 C 0.144 3.856 17 N -0.728 5.728 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.159 4.159 27 C -0.184 4.184 28 C -0.171 4.171 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 9.486 -15.776 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.310 5.310 3 C 0.387 3.613 4 O -0.399 6.399 5 C -0.162 4.162 6 N -0.030 5.030 7 O 0.048 5.952 8 C -0.111 4.111 9 C -0.154 4.154 10 C -0.082 4.082 11 C -0.159 4.159 12 C -0.158 4.158 13 C -0.070 4.070 14 C 0.059 3.941 15 H 0.123 0.877 16 C 0.016 3.984 17 N -0.372 5.372 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.179 4.179 27 C -0.221 4.221 28 C -0.208 4.208 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.126 0.874 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.689 8.467 -15.505 18.048 hybrid contribution 0.361 0.095 1.015 1.082 sum -3.328 8.562 -14.490 17.157 Atomic orbital electron populations 1.21867 0.78805 1.02088 1.03086 1.47444 1.07465 1.04916 1.71139 1.16825 0.86086 0.81478 0.76944 1.90754 1.12644 1.86250 1.50236 1.22949 0.90588 0.96220 1.06433 1.74751 1.15736 0.95881 1.16660 1.84683 1.33906 1.11644 1.64959 1.24031 0.86006 0.96496 1.04524 1.20603 0.98461 0.90206 1.06106 1.19990 0.90038 0.95065 1.03140 1.21707 1.00497 0.94618 0.99079 1.21659 0.92823 1.00263 1.01014 1.20208 0.98758 0.84111 1.03922 1.20920 0.97812 0.81948 0.93410 0.87690 1.21122 0.97893 0.93481 0.85944 1.42287 1.78812 1.15725 1.00373 1.19141 1.36503 0.98002 0.83613 0.91308 1.24744 1.01994 0.96268 0.97768 1.69680 1.50839 1.08752 1.28444 0.86282 0.77906 0.77743 0.84316 1.21264 1.21717 1.21313 1.22560 1.05809 0.90157 0.99360 1.23215 0.94047 1.01337 1.03476 1.22954 0.96109 0.99298 1.02484 0.91462 0.91091 0.91052 0.89529 0.89547 0.91592 0.90734 0.90252 0.90799 0.89044 0.89002 0.95279 0.95540 0.78131 0.93547 0.87877 0.87427 0.89221 0.88992 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 8.47 59.85 0.51 1.92 16 2 N -0.58 -10.82 2.24 -174.87 -0.39 -11.22 16 3 C 0.60 12.20 7.40 -12.11 -0.09 12.11 16 4 O -0.52 -11.63 15.53 5.37 0.08 -11.54 16 5 C 0.00 -0.07 6.78 -82.82 -0.56 -0.63 16 6 N -0.33 -5.71 9.02 33.29 0.30 -5.41 16 7 O 0.12 1.81 11.18 19.18 0.21 2.03 16 8 C -0.05 -0.61 7.38 -35.38 -0.26 -0.87 16 9 C -0.15 -2.32 6.04 -104.91 -0.63 -2.95 16 10 C -0.04 -0.60 5.64 -27.90 -0.16 -0.75 16 11 C -0.12 -1.10 5.92 -26.39 -0.16 -1.25 16 12 C -0.12 -0.96 5.88 -26.45 -0.16 -1.11 16 13 C -0.03 -0.27 6.31 -27.71 -0.17 -0.44 16 14 C 0.16 2.97 2.58 -67.93 -0.18 2.79 16 15 H 0.11 2.15 6.91 -51.93 -0.36 1.80 16 16 C 0.14 3.01 4.19 -4.04 -0.02 2.99 16 17 N -0.73 -19.48 5.43 -59.91 -0.33 -19.80 16 18 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -29.43 13.06 55.49 0.72 -28.70 16 22 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 C -0.16 -2.27 4.99 -90.62 -0.45 -2.72 16 27 C -0.18 -2.32 9.44 -26.69 -0.25 -2.57 16 28 C -0.17 -2.14 9.94 -26.69 -0.27 -2.40 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.11 5.97 -51.93 -0.31 0.80 16 31 H 0.07 1.03 7.16 -51.93 -0.37 0.66 16 32 H 0.09 1.20 7.95 -51.93 -0.41 0.79 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.61 7.44 -51.93 -0.39 0.22 16 41 H 0.03 0.55 6.30 -51.93 -0.33 0.22 16 42 H 0.38 11.24 7.07 -40.82 -0.29 10.96 16 43 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.11 1.49 5.80 -51.93 -0.30 1.19 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.10 1.30 7.66 -51.93 -0.40 0.91 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -34.53 381.71 -9.11 -43.64 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.35 Total: 10.65 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -3.09 Total: -3.49 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.31 Total: -65.13 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.30 Total: -9.52 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.53 -9.11 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725467836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.340 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds