Wall clock time and date at job start Tue Mar 31 2020 17:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00144 * 2 1 4 4 O 1.21492 * 119.99768 * 185.37892 * 3 2 1 5 5 C 1.48326 * 119.99741 * 5.37635 * 3 2 1 6 6 N 1.31494 * 127.15676 * 5.89379 * 5 3 2 7 7 O 1.21429 * 111.52846 * 179.97438 * 6 5 3 8 8 C 1.33194 * 111.56788 * 359.96387 * 7 6 5 9 9 C 1.35370 * 106.63610 * 359.80501 * 8 7 6 10 10 C 1.50064 * 124.93924 * 179.41008 * 9 8 7 11 11 C 1.53558 * 108.29309 * 344.49642 * 10 9 8 12 12 C 1.53108 * 109.50610 * 48.95683 * 11 10 9 13 13 C 1.50606 * 129.60104 * 180.18774 * 8 7 6 14 14 C 1.46503 * 119.99922 * 180.02562 * 2 1 3 15 15 H 1.09005 * 109.47220 * 180.02562 * 14 2 1 16 16 C 1.53000 * 109.47078 * 299.99725 * 14 2 1 17 17 N 1.46496 * 109.47353 * 305.00465 * 16 14 2 18 18 C 1.36936 * 120.00546 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99717 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00436 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99635 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99901 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47511 * 60.00031 * 22 20 18 24 24 H 1.48507 * 109.47188 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47481 * 300.00082 * 22 20 18 26 26 C 1.52997 * 109.47400 * 59.99960 * 14 2 1 27 27 C 1.53000 * 117.49652 * 248.74722 * 26 14 2 28 28 C 1.53006 * 117.50048 * 180.08982 * 26 14 2 29 29 H 1.09000 * 109.47027 * 275.36186 * 1 2 3 30 30 H 1.08996 * 109.47338 * 35.37014 * 1 2 3 31 31 H 1.09003 * 109.46868 * 155.36601 * 1 2 3 32 32 H 1.09003 * 109.87661 * 224.68124 * 10 9 8 33 33 H 1.08996 * 109.48350 * 104.08611 * 10 9 8 34 34 H 1.08998 * 109.46462 * 288.94551 * 11 10 9 35 35 H 1.09001 * 109.46441 * 168.96422 * 11 10 9 36 36 H 1.08994 * 109.42746 * 170.06118 * 12 11 10 37 37 H 1.08996 * 109.38460 * 50.19022 * 12 11 10 38 38 H 1.08996 * 109.69273 * 282.91782 * 13 8 7 39 39 H 1.08997 * 109.69363 * 43.47275 * 13 8 7 40 40 H 1.09001 * 109.47288 * 185.00195 * 16 14 2 41 41 H 1.09002 * 109.46766 * 65.00037 * 16 14 2 42 42 H 0.97006 * 119.99930 * 359.97438 * 17 16 14 43 43 H 0.97000 * 119.99886 * 180.02562 * 21 20 18 44 44 H 1.09000 * 115.54944 * 34.41284 * 26 14 2 45 45 H 1.08995 * 117.50546 * 0.02562 * 27 26 14 46 46 H 1.09004 * 117.49724 * 145.01739 * 27 26 14 47 47 H 1.08996 * 117.49717 * 214.97986 * 28 26 14 48 48 H 1.08994 * 117.49394 * 359.97346 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3498 1.1694 -0.0986 5 6 1.4021 2.4489 0.1204 6 7 0.1156 2.6077 0.3408 7 8 -0.1868 3.7829 0.3875 8 6 0.8727 4.5687 0.2027 9 6 1.9367 3.7502 0.0285 10 6 3.3423 4.2101 -0.2255 11 6 3.2987 5.6891 -0.6363 12 6 2.4332 6.4701 0.3562 13 6 0.9614 6.0720 0.1849 14 6 2.1975 -1.2688 -0.0006 15 1 3.2692 -1.0696 0.0000 16 6 1.8279 -2.0716 1.2484 17 7 2.0706 -1.2574 2.4418 18 6 1.8113 -1.7700 3.6848 19 1 1.4273 -2.7745 3.7853 20 6 2.0418 -0.9987 4.8157 21 7 2.5101 0.2251 4.6932 22 14 1.6873 -1.6979 6.5112 23 1 2.5154 -2.9111 6.7296 24 1 2.0158 -0.6826 7.5440 25 1 0.2494 -2.0561 6.6083 26 6 1.8279 -2.0705 -1.2501 27 6 1.0115 -3.3494 -1.0530 28 6 2.4913 -3.4369 -1.4347 29 1 -0.3633 0.0960 1.0232 30 1 -0.3634 0.8379 -0.5948 31 1 -0.3633 -0.9342 -0.4284 32 1 3.7867 3.6191 -1.0263 33 1 3.9314 4.0987 0.6849 34 1 2.8732 5.7759 -1.6361 35 1 4.3098 6.0963 -0.6354 36 1 2.5437 7.5385 0.1710 37 1 2.7542 6.2432 1.3727 38 1 0.5867 6.4508 -0.7660 39 1 0.3711 6.4846 1.0030 40 1 2.4377 -2.9739 1.2939 41 1 0.7741 -2.3469 1.2046 42 1 2.4158 -0.3554 2.3516 43 1 2.6715 0.7640 5.4835 44 1 1.6316 -1.4812 -2.1458 45 1 0.7373 -3.6194 -0.0332 46 1 0.2784 -3.6017 -1.8192 47 1 2.7312 -3.7466 -2.4518 48 1 3.1914 -3.7643 -0.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725467836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:53 Heat of formation + Delta-G solvation = 50.618362 kcal Electronic energy + Delta-G solvation = -30037.222134 eV Core-core repulsion = 26096.107950 eV Total energy + Delta-G solvation = -3941.114184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.17681 -41.33101 -39.19192 -38.52399 -36.51701 -36.00586 -34.84538 -33.13609 -31.98434 -31.25335 -29.89853 -27.99577 -26.71442 -25.59742 -24.77674 -24.00073 -23.73176 -23.14350 -21.50503 -20.62601 -20.06965 -19.14965 -18.96645 -18.36455 -17.89323 -17.60482 -16.72775 -16.60221 -16.20159 -15.90358 -15.42768 -15.15733 -14.99655 -14.91012 -14.79639 -14.66137 -14.40404 -14.18119 -14.13935 -13.78949 -13.40525 -13.21664 -13.12208 -12.99604 -12.76666 -12.44769 -12.29037 -12.26977 -12.10230 -11.89092 -11.86251 -11.81925 -11.68761 -11.47182 -11.28669 -11.16683 -11.03301 -10.86746 -10.10756 -9.77809 -9.08553 -7.99545 -5.30965 0.03023 0.63343 1.40383 1.45045 1.51038 1.61486 1.95393 2.03096 2.49908 2.80789 2.87331 3.33303 3.40589 3.59082 3.65952 3.81123 3.92631 3.99490 4.00473 4.03608 4.05290 4.15754 4.22481 4.26791 4.34345 4.36829 4.47938 4.52024 4.57955 4.63838 4.75155 4.82230 4.86122 4.89643 4.91929 5.00666 5.00972 5.03812 5.15605 5.17373 5.19654 5.29386 5.33153 5.39947 5.43764 5.46445 6.12359 6.19263 6.79161 7.03524 7.24877 7.98798 8.23108 9.23660 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.004513 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.227175 B = 6203.041513 C = 8181.738334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.578 5.578 3 C 0.589 3.411 4 O -0.558 6.558 5 C -0.039 4.039 6 N -0.344 5.344 7 O 0.128 5.872 8 C -0.024 4.024 9 C -0.175 4.175 10 C -0.045 4.045 11 C -0.114 4.114 12 C -0.118 4.118 13 C -0.031 4.031 14 C 0.168 3.832 15 H 0.074 0.926 16 C 0.147 3.853 17 N -0.743 5.743 18 C -0.247 4.247 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.275 1.275 26 C -0.170 4.170 27 C -0.169 4.169 28 C -0.161 4.161 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.035 0.965 41 H 0.040 0.960 42 H 0.367 0.633 43 H 0.249 0.751 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 10.059 -16.991 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.309 5.309 3 C 0.376 3.624 4 O -0.436 6.436 5 C -0.195 4.195 6 N -0.047 5.047 7 O 0.055 5.945 8 C -0.089 4.089 9 C -0.181 4.181 10 C -0.083 4.083 11 C -0.151 4.151 12 C -0.155 4.155 13 C -0.069 4.069 14 C 0.065 3.935 15 H 0.092 0.908 16 C 0.020 3.980 17 N -0.386 5.386 18 C -0.379 4.379 19 H 0.098 0.902 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.200 1.200 26 C -0.189 4.189 27 C -0.206 4.206 28 C -0.199 4.199 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.199 0.801 43 H 0.058 0.942 44 H 0.132 0.868 45 H 0.112 0.888 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.312 8.964 -16.750 19.727 hybrid contribution 0.851 -0.083 1.358 1.605 sum -4.462 8.881 -15.392 18.322 Atomic orbital electron populations 1.21850 0.77551 1.03960 1.01533 1.47573 1.08231 1.04704 1.70348 1.17255 0.86036 0.82605 0.76500 1.90707 1.14010 1.86935 1.51930 1.22998 0.91449 0.96578 1.08503 1.74707 1.15379 0.97154 1.17430 1.84638 1.34535 1.11226 1.64127 1.24955 0.84282 0.98362 1.01301 1.20971 1.00172 0.89548 1.07397 1.20022 0.88507 0.98274 1.01471 1.21711 1.02113 0.91213 1.00063 1.21717 0.92019 1.02184 0.99624 1.20619 0.99606 0.80105 1.06560 1.20775 0.96223 0.82142 0.94383 0.90759 1.21281 0.98409 0.93210 0.85129 1.42522 1.78803 1.15539 1.01703 1.19617 1.35266 0.98328 0.84663 0.90177 1.25668 1.02564 0.96662 1.01987 1.69887 1.52819 1.10400 1.29085 0.85137 0.78229 0.76986 0.78942 1.20077 1.22260 1.20046 1.22378 1.08361 0.90657 0.97521 1.23256 0.94745 0.98954 1.03657 1.23060 0.95958 0.97101 1.03735 0.94521 0.89982 0.88431 0.91183 0.92024 0.90068 0.89158 0.86421 0.92511 0.85582 0.86912 0.94723 0.94269 0.80132 0.94206 0.86795 0.88772 0.86335 0.86280 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.19 8.47 127.77 1.08 4.27 16 2 N -0.58 -22.71 2.24 -825.46 -1.85 -24.57 16 3 C 0.59 25.70 7.40 86.93 0.64 26.35 16 4 O -0.56 -27.00 15.53 -3.69 -0.06 -27.05 16 5 C -0.04 -1.53 6.78 42.55 0.29 -1.24 16 6 N -0.34 -12.45 9.02 -48.94 -0.44 -12.89 16 7 O 0.13 3.87 11.18 78.66 0.88 4.75 16 8 C -0.02 -0.62 7.38 24.99 0.18 -0.44 16 9 C -0.18 -5.67 6.04 -20.05 -0.12 -5.79 16 10 C -0.05 -1.26 5.64 29.84 0.17 -1.10 16 11 C -0.11 -1.87 5.92 30.82 0.18 -1.69 16 12 C -0.12 -1.55 5.88 30.77 0.18 -1.37 16 13 C -0.03 -0.42 6.31 29.96 0.19 -0.23 16 14 C 0.17 6.38 2.58 44.99 0.12 6.50 16 15 H 0.07 3.27 6.91 -2.38 -0.02 3.26 16 16 C 0.15 6.27 4.19 86.38 0.36 6.63 16 17 N -0.74 -41.34 5.43 -343.45 -1.87 -43.21 16 18 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 19 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -63.92 13.06 21.65 0.28 -63.64 16 22 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 26 C -0.17 -4.69 4.99 -10.79 -0.05 -4.75 16 27 C -0.17 -3.88 9.44 30.62 0.29 -3.59 16 28 C -0.16 -3.74 9.94 30.62 0.30 -3.43 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.62 5.97 -2.39 -0.01 2.60 16 31 H 0.10 2.74 7.16 -2.39 -0.02 2.73 16 32 H 0.07 2.13 7.95 -2.39 -0.02 2.11 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 38 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 1.46 7.44 -2.39 -0.02 1.44 16 41 H 0.04 1.60 6.30 -2.39 -0.02 1.59 16 42 H 0.37 22.76 7.07 -92.70 -0.66 22.10 16 43 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 44 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.09 2.44 5.80 -2.39 -0.01 2.43 16 46 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.09 2.25 7.66 -2.39 -0.02 2.23 16 Total: -1.00 -80.37 381.71 4.42 -75.95 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.33 Total: 38.18 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 5.12 Total: 2.15 kcal Atomic # 7 Polarization: -140.42 SS G_CDS: -3.88 Total: -144.30 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.82 Total: -22.31 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -80.37 4.42 -75.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725467836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.573 kcal (2) G-P(sol) polarization free energy of solvation -80.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds