Wall clock time and date at job start Tue Mar 31 2020 17:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35908 * 116.99853 * 2 1 4 4 C 1.39141 * 120.47284 * 359.97372 * 3 2 1 5 5 C 1.38542 * 118.37132 * 180.02562 * 4 3 2 6 6 C 1.38250 * 119.22108 * 0.02562 * 5 4 3 7 7 N 1.31846 * 120.88975 * 359.74556 * 6 5 4 8 8 C 1.31838 * 121.77677 * 0.52558 * 7 6 5 9 9 C 1.50704 * 119.65619 * 179.75140 * 8 7 6 10 10 C 1.50701 * 109.47415 * 269.72107 * 9 8 7 11 11 O 1.21283 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00547 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00449 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.01462 * 326.38679 * 13 12 10 15 15 C 1.54269 * 110.07753 * 87.80548 * 13 12 10 16 16 C 1.55032 * 104.27833 * 142.82513 * 15 13 12 17 17 C 1.54881 * 102.68502 * 322.23515 * 16 15 13 18 18 H 1.09006 * 110.48920 * 279.02910 * 17 16 15 19 19 C 1.53005 * 110.48896 * 156.51815 * 17 16 15 20 20 N 1.46505 * 109.46904 * 68.24079 * 19 17 16 21 21 C 1.36931 * 119.99788 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 19 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 C 1.53876 * 110.03258 * 205.00214 * 13 12 10 30 30 H 1.09005 * 109.47064 * 60.00031 * 1 2 3 31 31 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47343 * 300.00185 * 1 2 3 33 33 H 1.07996 * 120.81423 * 0.04734 * 4 3 2 34 34 H 1.07997 * 120.38868 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.55853 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47035 * 149.72701 * 9 8 7 37 37 H 1.08997 * 109.47497 * 29.72736 * 9 8 7 38 38 H 0.97005 * 119.99806 * 0.02562 * 12 10 9 39 39 H 1.08995 * 110.48656 * 261.59641 * 15 13 12 40 40 H 1.08999 * 110.48093 * 24.11002 * 15 13 12 41 41 H 1.09004 * 110.87147 * 203.90327 * 16 15 13 42 42 H 1.08994 * 110.69513 * 80.49103 * 16 15 13 43 43 H 1.09003 * 109.46946 * 308.24838 * 19 17 16 44 44 H 1.08993 * 109.47679 * 188.24380 * 19 17 16 45 45 H 0.97000 * 119.99792 * 0.02562 * 20 19 17 46 46 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 47 47 H 1.09001 * 110.03595 * 121.38256 * 29 13 12 48 48 H 1.08998 * 110.07283 * 359.96658 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3841 -0.0006 5 6 1.9716 3.5946 -0.0011 6 6 3.3541 3.5976 -0.0016 7 7 4.0334 2.4676 0.0035 8 6 3.4305 1.2951 -0.0011 9 6 4.2542 0.0331 -0.0007 10 6 4.5282 -0.3885 -1.4213 11 8 4.0975 0.2711 -2.3434 12 7 5.2519 -1.4985 -1.6673 13 6 5.5187 -1.9080 -3.0482 14 1 4.6725 -1.6484 -3.6845 15 6 6.7995 -1.2215 -3.5662 16 6 7.4820 -2.2997 -4.4465 17 6 7.2066 -3.6053 -3.6600 18 1 7.9198 -3.7163 -2.8432 19 6 7.2703 -4.8162 -4.5931 20 7 8.6501 -5.0129 -5.0444 21 6 8.9523 -6.0437 -5.8936 22 1 8.1735 -6.7114 -6.2311 23 6 10.2588 -6.2266 -6.3257 24 7 11.2079 -5.4125 -5.9149 25 14 10.6698 -7.6281 -7.4904 26 1 9.8949 -7.4706 -8.7473 27 1 12.1224 -7.6064 -7.7978 28 1 10.3188 -8.9218 -6.8513 29 6 5.7775 -3.4237 -3.1080 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2183 2.3518 -0.0002 34 1 1.4233 4.5251 -0.0019 35 1 3.8849 4.5382 -0.0024 36 1 3.7077 -0.7573 0.5138 37 1 5.1983 0.2155 0.5127 38 1 5.5962 -2.0264 -0.9298 39 1 6.5478 -0.3445 -4.1624 40 1 7.4462 -0.9432 -2.7340 41 1 8.5534 -2.1152 -4.5257 42 1 7.0217 -2.3390 -5.4337 43 1 6.6269 -4.6441 -5.4561 44 1 6.9324 -5.7044 -4.0594 45 1 9.3496 -4.4129 -4.7416 46 1 12.1209 -5.5406 -6.2165 47 1 5.0571 -3.8997 -3.7732 48 1 5.7053 -3.8552 -2.1096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725668270.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:00 Heat of formation + Delta-G solvation = -63.455272 kcal Electronic energy + Delta-G solvation = -27821.540677 eV Core-core repulsion = 23875.479889 eV Total energy + Delta-G solvation = -3946.060788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84816 -40.79869 -39.21515 -38.99376 -36.44660 -34.75317 -34.13424 -32.92803 -32.38057 -30.18724 -29.82379 -28.45068 -28.18355 -26.12851 -23.94780 -23.84681 -23.71905 -21.67858 -21.34596 -20.93069 -19.09455 -19.04042 -18.23516 -18.13460 -17.58156 -16.94798 -16.70680 -16.64898 -16.18146 -15.85065 -15.58759 -15.29407 -15.11096 -14.98136 -14.83057 -14.55676 -14.40549 -14.28331 -14.02907 -13.53664 -13.21426 -13.17282 -13.04177 -12.76789 -12.72972 -12.40102 -12.35019 -12.30353 -12.19321 -12.07445 -11.76998 -11.62199 -11.52763 -11.46792 -11.01338 -10.88666 -10.62118 -10.57035 -10.02514 -9.33020 -8.96499 -7.93235 -5.21401 0.10706 0.29881 1.47538 1.50862 1.56977 1.68096 2.18359 2.25471 2.57544 2.84800 3.30893 3.39787 3.58865 3.60922 3.64535 3.82786 3.89541 3.97048 4.09199 4.19701 4.28075 4.34825 4.36553 4.44582 4.48038 4.50784 4.51591 4.55035 4.62622 4.70655 4.71891 4.78937 4.80875 4.90271 5.04684 5.06942 5.10323 5.12292 5.17139 5.25422 5.38831 5.48843 5.50567 5.56187 5.64330 6.22362 6.29259 6.61140 7.01130 7.30929 7.35425 8.13399 8.36420 9.30184 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030745 B = 0.001819 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.487161 B =15390.384134 C =15941.599587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.078 3.922 4 C -0.170 4.170 5 C -0.128 4.128 6 C 0.045 3.955 7 N -0.471 5.471 8 C 0.095 3.905 9 C -0.081 4.081 10 C 0.522 3.478 11 O -0.583 6.583 12 N -0.710 5.710 13 C 0.150 3.850 14 H 0.074 0.926 15 C -0.124 4.124 16 C -0.108 4.108 17 C -0.088 4.088 18 H 0.074 0.926 19 C 0.158 3.842 20 N -0.744 5.744 21 C -0.246 4.246 22 H 0.075 0.925 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.279 1.279 27 H -0.295 1.295 28 H -0.277 1.277 29 C -0.108 4.108 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.417 0.583 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.023 0.977 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.080 0.920 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.998 16.388 19.153 35.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.030 3.970 4 C -0.196 4.196 5 C -0.147 4.147 6 C -0.112 4.112 7 N -0.180 5.180 8 C -0.045 4.045 9 C -0.121 4.121 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.362 5.362 13 C 0.045 3.955 14 H 0.092 0.908 15 C -0.162 4.162 16 C -0.147 4.147 17 C -0.107 4.107 18 H 0.093 0.907 19 C 0.031 3.969 20 N -0.387 5.387 21 C -0.378 4.378 22 H 0.093 0.907 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.803 3.197 26 H -0.205 1.205 27 H -0.222 1.222 28 H -0.203 1.203 29 C -0.146 4.146 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.184 0.816 34 H 0.189 0.811 35 H 0.195 0.805 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.041 0.959 45 H 0.206 0.794 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.393 16.510 18.413 34.737 hybrid contribution -0.021 -0.508 -0.624 0.805 sum -24.414 16.002 17.790 34.185 Atomic orbital electron populations 1.23397 0.76223 1.05859 1.02322 1.86059 1.23574 1.25776 1.88233 1.19991 0.93096 0.86234 0.97642 1.22070 1.02153 0.91687 1.03693 1.22373 0.95304 0.99520 0.97526 1.23103 0.92691 0.96449 0.98955 1.67414 1.41320 0.98425 1.10874 1.20163 0.88747 0.93729 1.01843 1.20475 1.02721 0.94912 0.93985 1.20789 0.76854 0.80033 0.91421 1.90681 1.53124 1.54636 1.47833 1.46053 1.54306 1.27061 1.08802 1.21434 0.96990 0.94195 0.82841 0.90818 1.22700 0.96540 0.97574 0.99414 1.22390 0.99811 0.94257 0.98199 1.22026 0.97472 0.93790 0.97380 0.90710 1.20877 0.85701 0.95469 0.94819 1.42561 1.05364 1.34594 1.56171 1.19624 0.93268 1.05624 1.19279 0.90749 1.25583 0.95990 1.02152 1.03284 1.69813 1.00690 1.41217 1.50324 0.85199 0.76326 0.79221 0.78943 1.20547 1.22153 1.20272 1.22317 0.95690 0.93602 1.03028 0.92231 0.86298 0.90768 0.81619 0.81074 0.80452 0.84855 0.85531 0.74579 0.92643 0.90827 0.92896 0.92451 0.96504 0.95939 0.79404 0.94049 0.90178 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 113.37 1.11 1.26 16 2 O -0.32 -5.64 9.55 -92.52 -0.88 -6.52 16 3 C 0.08 1.54 6.67 22.60 0.15 1.69 16 4 C -0.17 -2.46 9.14 22.56 0.21 -2.25 16 5 C -0.13 -1.68 10.11 22.35 0.23 -1.45 16 6 C 0.05 0.79 11.18 84.69 0.95 1.74 16 7 N -0.47 -11.19 10.27 -183.50 -1.88 -13.07 16 8 C 0.09 2.15 5.29 42.67 0.23 2.37 16 9 C -0.08 -1.51 5.77 29.10 0.17 -1.34 16 10 C 0.52 12.86 7.82 87.66 0.69 13.55 16 11 O -0.58 -19.91 15.69 -3.04 -0.05 -19.96 16 12 N -0.71 -14.37 5.04 -439.11 -2.21 -16.58 16 13 C 0.15 3.70 3.25 45.72 0.15 3.85 16 14 H 0.07 2.09 7.56 -2.38 -0.02 2.07 16 15 C -0.12 -3.44 6.54 31.72 0.21 -3.23 16 16 C -0.11 -3.52 6.11 31.93 0.20 -3.33 16 17 C -0.09 -2.73 2.90 -9.72 -0.03 -2.76 16 18 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 19 C 0.16 6.29 5.54 86.38 0.48 6.77 16 20 N -0.74 -38.44 5.47 -343.44 -1.88 -40.32 16 21 C -0.25 -14.01 9.99 84.04 0.84 -13.17 16 22 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 24 N -0.97 -60.29 13.06 21.65 0.28 -60.00 16 25 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 29 C -0.11 -2.51 6.14 31.32 0.19 -2.32 16 30 H 0.06 0.48 7.70 -2.38 -0.02 0.46 16 31 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.35 7.70 -2.39 -0.02 0.34 16 33 H 0.17 1.31 6.45 -2.91 -0.02 1.29 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.13 1.81 7.52 -2.39 -0.02 1.80 16 37 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.42 5.65 8.32 -92.70 -0.77 4.88 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 41 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.06 1.98 8.00 -2.39 -0.02 1.96 16 43 H 0.02 0.69 8.06 -2.39 -0.02 0.67 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.37 20.51 7.58 -92.71 -0.70 19.81 16 46 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 47 H 0.08 1.85 7.84 -2.39 -0.02 1.83 16 48 H 0.10 1.74 7.62 -2.39 -0.02 1.73 16 Total: -1.00 -79.90 395.22 1.13 -78.77 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.50 Total: 31.55 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.22 Total: -2.72 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -5.69 Total: -129.97 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.93 Total: -26.48 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -79.90 1.13 -78.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725668270.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.315 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds