Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99570 * 2 1 4 4 C 1.52999 * 109.46602 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47090 * 65.00522 * 4 3 2 6 6 C 1.36930 * 120.00074 * 269.99464 * 5 4 3 7 7 H 1.08005 * 119.99957 * 146.45845 * 6 5 4 8 8 C 1.38808 * 120.00389 * 326.46398 * 6 5 4 9 9 N 1.31622 * 119.99892 * 337.99956 * 8 6 5 10 10 Si 1.86796 * 120.00485 * 158.00187 * 8 6 5 11 11 H 1.48499 * 109.47447 * 89.99953 * 10 8 6 12 12 H 1.48500 * 109.47201 * 210.00272 * 10 8 6 13 13 H 1.48502 * 109.47118 * 329.99769 * 10 8 6 14 14 C 1.46506 * 119.99951 * 89.99809 * 5 4 3 15 15 C 1.52994 * 109.47488 * 85.94539 * 14 5 4 16 16 N 1.46493 * 109.47432 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00174 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99934 * 5.62888 * 17 16 15 19 19 C 1.50703 * 120.00069 * 185.63559 * 17 16 15 20 20 C 1.50694 * 115.54973 * 299.49332 * 19 17 16 21 21 C 1.38223 * 119.62102 * 290.65036 * 20 19 17 22 22 C 1.38625 * 119.16460 * 180.02562 * 21 20 19 23 23 C 1.38666 * 118.42229 * 0.02562 * 22 21 20 24 24 C 1.38180 * 119.16245 * 359.97438 * 23 22 21 25 25 N 1.31857 * 119.61750 * 110.94242 * 20 19 17 26 26 C 1.53001 * 117.51871 * 85.19408 * 19 17 16 27 27 C 1.52997 * 117.49922 * 153.82517 * 19 17 16 28 28 H 1.09001 * 109.46447 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47316 * 299.99530 * 1 2 3 30 30 H 1.08998 * 109.46892 * 59.99971 * 1 2 3 31 31 H 1.08997 * 109.46643 * 60.00418 * 3 2 1 32 32 H 1.08994 * 109.47528 * 300.00248 * 3 2 1 33 33 H 1.08994 * 109.47563 * 305.00447 * 4 3 2 34 34 H 1.09003 * 109.46955 * 185.00106 * 4 3 2 35 35 H 0.96993 * 120.00395 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47202 * 325.94353 * 14 5 4 37 37 H 1.09001 * 109.47206 * 205.94798 * 14 5 4 38 38 H 1.09001 * 109.47052 * 59.99722 * 15 14 5 39 39 H 1.09001 * 109.47108 * 300.00319 * 15 14 5 40 40 H 0.97003 * 119.99775 * 0.02562 * 16 15 14 41 41 H 1.08002 * 120.41796 * 0.02562 * 21 20 19 42 42 H 1.08000 * 120.79122 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.41985 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.62201 * 179.97438 * 24 23 22 45 45 H 1.08996 * 117.50161 * 214.97019 * 26 19 17 46 46 H 1.09001 * 117.49820 * 359.97438 * 26 19 17 47 47 H 1.08998 * 117.49857 * 359.97438 * 27 19 17 48 48 H 1.08998 * 117.49908 * 144.99810 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.0978 -0.7972 -1.3346 7 1 3.8855 -1.3021 -2.2654 8 6 4.4935 -1.5284 -0.2230 9 7 5.1555 -0.9397 0.7504 10 14 4.0867 -3.3480 -0.1087 11 1 5.1878 -4.1404 -0.7128 12 1 3.9260 -3.7306 1.3171 13 1 2.8228 -3.6195 -0.8395 14 6 4.2882 1.4001 -2.4130 15 6 5.7419 1.8697 -2.3285 16 7 6.0536 2.7051 -3.4908 17 6 7.2857 3.2335 -3.6299 18 8 8.1648 2.9360 -2.8492 19 6 7.5708 4.1943 -4.7554 20 6 7.3706 3.6457 -6.1446 21 6 8.2353 2.6829 -6.6301 22 6 8.0427 2.1852 -7.9095 23 6 6.9831 2.6772 -8.6565 24 6 6.1599 3.6400 -8.1045 25 7 6.3760 4.0940 -6.8852 26 6 7.2425 5.6708 -4.5248 27 6 8.7001 5.2062 -4.5515 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1767 0.0902 35 1 5.4317 -1.4505 1.5273 36 1 3.6268 2.2664 -2.4253 37 1 4.1458 0.8214 -3.3256 38 1 6.4034 1.0034 -2.3162 39 1 5.8843 2.4485 -1.4159 40 1 5.3733 2.8779 -4.1603 41 1 9.0508 2.3227 -6.0203 42 1 8.7023 1.4322 -8.3150 43 1 6.8030 2.3119 -9.6568 44 1 5.3326 4.0287 -8.6798 45 1 6.8817 6.2453 -5.3779 46 1 6.8198 5.9474 -3.5590 47 1 9.2365 5.1774 -3.6030 48 1 9.2981 5.4752 -5.4221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725756799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = 9.367295 kcal Electronic energy + Delta-G solvation = -28645.821330 eV Core-core repulsion = 24702.918365 eV Total energy + Delta-G solvation = -3942.902965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.79602 -39.30317 -37.26858 -36.55447 -35.64197 -34.05069 -32.61869 -31.36778 -31.17429 -29.49521 -27.50565 -25.64302 -25.19597 -23.83753 -23.70994 -22.66011 -22.29641 -21.70682 -20.13780 -19.48345 -17.76393 -16.73641 -16.47949 -16.31924 -15.77283 -15.69117 -15.43589 -15.04642 -14.88880 -14.55044 -14.45105 -14.14829 -13.94776 -13.77941 -13.49506 -13.39212 -13.11461 -12.81219 -12.54476 -11.98118 -11.90254 -11.66368 -11.63579 -11.13434 -10.93080 -10.86363 -10.75664 -10.71012 -10.63602 -10.42527 -10.09670 -10.08137 -9.91968 -9.71688 -9.69185 -9.62343 -9.07241 -8.80458 -8.55427 -8.40091 -6.60365 -5.68794 -3.22953 0.85304 1.06975 2.73931 3.32252 3.46065 3.46668 3.53146 3.59158 3.79976 4.00297 4.47406 4.58493 4.64309 4.71641 4.77590 4.79956 4.89204 4.91427 5.06391 5.27056 5.43909 5.49880 5.52852 5.53664 5.66212 5.75960 5.76359 5.82068 5.90696 5.92755 5.99164 6.02676 6.03796 6.09376 6.15986 6.27148 6.34577 6.46221 6.61714 6.68304 6.78845 6.83326 7.05145 7.73059 7.75884 7.87192 7.89645 8.09751 8.52726 8.59267 9.23507 9.88718 10.39986 11.32651 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.002823 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.994941 B = 9916.233119 C =10099.755004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.049 3.951 4 C 0.135 3.865 5 N -0.570 5.570 6 C -0.243 4.243 7 H 0.059 0.941 8 C 0.018 3.982 9 N -0.890 5.890 10 Si 0.901 3.099 11 H -0.291 1.291 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.139 3.861 15 C 0.097 3.903 16 N -0.716 5.716 17 C 0.550 3.450 18 O -0.534 6.534 19 C -0.120 4.120 20 C 0.168 3.832 21 C -0.154 4.154 22 C -0.073 4.073 23 C -0.175 4.175 24 C 0.100 3.900 25 N -0.474 5.474 26 C -0.135 4.135 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.254 0.746 36 H 0.036 0.964 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.396 0.604 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.157 0.843 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.112 0.888 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 12.087 -15.401 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.030 4.030 4 C 0.009 3.991 5 N -0.289 5.289 6 C -0.373 4.373 7 H 0.077 0.923 8 C -0.181 4.181 9 N -0.534 5.534 10 Si 0.731 3.269 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.011 3.989 15 C -0.028 4.028 16 N -0.366 5.366 17 C 0.333 3.667 18 O -0.411 6.411 19 C -0.124 4.124 20 C 0.030 3.970 21 C -0.173 4.173 22 C -0.099 4.099 23 C -0.195 4.195 24 C -0.057 4.057 25 N -0.183 5.183 26 C -0.172 4.172 27 C -0.173 4.173 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.131 0.869 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.230 0.770 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.175 0.825 45 H 0.127 0.873 46 H 0.121 0.879 47 H 0.130 0.870 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.138 12.235 -14.294 18.850 hybrid contribution -0.288 -1.363 -0.645 1.534 sum 0.850 10.873 -14.939 18.496 Atomic orbital electron populations 1.22633 0.84366 1.01442 0.98355 1.88234 1.16440 1.27642 1.94799 1.23370 0.98794 0.84117 0.96759 1.21175 0.87591 0.96869 0.93477 1.43701 1.74312 1.02654 1.08229 1.18890 1.39309 0.81198 0.97894 0.92313 1.24951 0.96961 0.97771 0.98448 1.69899 1.37515 1.35833 1.10133 0.86342 0.78248 0.85468 0.76875 1.21812 1.21658 1.20384 1.21093 0.90858 0.94086 0.92821 1.22509 1.00577 0.93714 0.85983 1.46153 1.12435 1.51231 1.26744 1.19140 0.82855 0.80450 0.84248 1.90721 1.45087 1.60433 1.44845 1.19994 1.09256 0.92461 0.90700 1.19873 0.91011 0.93220 0.92900 1.21974 1.00973 0.97803 0.96596 1.21606 0.96782 0.97837 0.93661 1.22168 0.96659 0.99094 1.01535 1.22749 0.98123 0.93665 0.91211 1.67399 1.18309 1.26464 1.06096 1.22991 0.98006 0.92206 1.04013 1.23056 0.91471 0.98413 1.04336 0.90770 0.95553 0.95354 0.95676 0.95615 0.86908 0.94260 0.93636 0.94591 0.93162 0.90940 0.92263 0.77048 0.84538 0.84626 0.84731 0.82545 0.87271 0.87946 0.86983 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.87 10.18 -35.23 -0.36 -8.22 16 3 C 0.05 0.99 6.28 37.16 0.23 1.23 16 4 C 0.14 3.15 5.74 -4.04 -0.02 3.13 16 5 N -0.57 -13.87 2.44 -173.24 -0.42 -14.29 16 6 C -0.24 -6.64 8.98 -15.06 -0.14 -6.77 16 7 H 0.06 1.62 7.92 -52.48 -0.42 1.20 16 8 C 0.02 0.51 4.98 -17.43 -0.09 0.42 16 9 N -0.89 -25.82 11.22 55.49 0.62 -25.20 16 10 Si 0.90 22.47 29.61 -169.99 -5.03 17.44 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 C 0.14 2.82 5.78 -4.04 -0.02 2.79 16 15 C 0.10 1.97 6.00 -4.05 -0.02 1.94 16 16 N -0.72 -11.94 5.55 -60.30 -0.33 -12.27 16 17 C 0.55 9.33 7.06 -10.98 -0.08 9.25 16 18 O -0.53 -11.17 16.59 5.56 0.09 -11.08 16 19 C -0.12 -1.57 2.12 -156.81 -0.33 -1.90 16 20 C 0.17 2.08 5.91 -82.59 -0.49 1.59 16 21 C -0.15 -1.77 9.75 -39.44 -0.38 -2.15 16 22 C -0.07 -0.67 10.18 -39.28 -0.40 -1.07 16 23 C -0.17 -1.45 10.11 -39.44 -0.40 -1.84 16 24 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 25 N -0.47 -5.54 9.88 -9.47 -0.09 -5.63 16 26 C -0.13 -1.47 9.74 -26.73 -0.26 -1.73 16 27 C -0.13 -1.50 9.75 -26.73 -0.26 -1.76 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 3.04 5.24 -51.93 -0.27 2.77 16 34 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.05 1.01 8.01 -51.93 -0.42 0.59 16 38 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.40 5.80 8.48 -40.82 -0.35 5.45 16 41 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.11 1.08 8.00 -51.93 -0.42 0.67 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.11 1.33 7.91 -51.93 -0.41 0.92 16 48 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 406.90 15.07 6.13 6.13 Total: -1.00 -33.17 406.90 -8.89 -42.06 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.75 Total: 5.61 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.74 Total: 5.46 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.23 Total: -57.39 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.27 Total: -19.30 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.17 -8.89 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725756799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.426 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds