Wall clock time and date at job start Tue Mar 31 2020 17:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99570 * 2 1 4 4 C 1.52999 * 109.46602 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47090 * 65.00522 * 4 3 2 6 6 C 1.36930 * 120.00074 * 269.99464 * 5 4 3 7 7 H 1.08005 * 119.99957 * 146.45845 * 6 5 4 8 8 C 1.38808 * 120.00389 * 326.46398 * 6 5 4 9 9 N 1.31622 * 119.99892 * 337.99956 * 8 6 5 10 10 Si 1.86796 * 120.00485 * 158.00187 * 8 6 5 11 11 H 1.48499 * 109.47447 * 89.99953 * 10 8 6 12 12 H 1.48500 * 109.47201 * 210.00272 * 10 8 6 13 13 H 1.48502 * 109.47118 * 329.99769 * 10 8 6 14 14 C 1.46506 * 119.99951 * 89.99809 * 5 4 3 15 15 C 1.52994 * 109.47488 * 85.94539 * 14 5 4 16 16 N 1.46493 * 109.47432 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00174 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99934 * 5.62888 * 17 16 15 19 19 C 1.50703 * 120.00069 * 185.63559 * 17 16 15 20 20 C 1.50694 * 115.54973 * 299.49332 * 19 17 16 21 21 C 1.38223 * 119.62102 * 290.65036 * 20 19 17 22 22 C 1.38625 * 119.16460 * 180.02562 * 21 20 19 23 23 C 1.38666 * 118.42229 * 0.02562 * 22 21 20 24 24 C 1.38180 * 119.16245 * 359.97438 * 23 22 21 25 25 N 1.31857 * 119.61750 * 110.94242 * 20 19 17 26 26 C 1.53001 * 117.51871 * 85.19408 * 19 17 16 27 27 C 1.52997 * 117.49922 * 153.82517 * 19 17 16 28 28 H 1.09001 * 109.46447 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47316 * 299.99530 * 1 2 3 30 30 H 1.08998 * 109.46892 * 59.99971 * 1 2 3 31 31 H 1.08997 * 109.46643 * 60.00418 * 3 2 1 32 32 H 1.08994 * 109.47528 * 300.00248 * 3 2 1 33 33 H 1.08994 * 109.47563 * 305.00447 * 4 3 2 34 34 H 1.09003 * 109.46955 * 185.00106 * 4 3 2 35 35 H 0.96993 * 120.00395 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47202 * 325.94353 * 14 5 4 37 37 H 1.09001 * 109.47206 * 205.94798 * 14 5 4 38 38 H 1.09001 * 109.47052 * 59.99722 * 15 14 5 39 39 H 1.09001 * 109.47108 * 300.00319 * 15 14 5 40 40 H 0.97003 * 119.99775 * 0.02562 * 16 15 14 41 41 H 1.08002 * 120.41796 * 0.02562 * 21 20 19 42 42 H 1.08000 * 120.79122 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.41985 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.62201 * 179.97438 * 24 23 22 45 45 H 1.08996 * 117.50161 * 214.97019 * 26 19 17 46 46 H 1.09001 * 117.49820 * 359.97438 * 26 19 17 47 47 H 1.08998 * 117.49857 * 359.97438 * 27 19 17 48 48 H 1.08998 * 117.49908 * 144.99810 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.0978 -0.7972 -1.3346 7 1 3.8855 -1.3021 -2.2654 8 6 4.4935 -1.5284 -0.2230 9 7 5.1555 -0.9397 0.7504 10 14 4.0867 -3.3480 -0.1087 11 1 5.1878 -4.1404 -0.7128 12 1 3.9260 -3.7306 1.3171 13 1 2.8228 -3.6195 -0.8395 14 6 4.2882 1.4001 -2.4130 15 6 5.7419 1.8697 -2.3285 16 7 6.0536 2.7051 -3.4908 17 6 7.2857 3.2335 -3.6299 18 8 8.1648 2.9360 -2.8492 19 6 7.5708 4.1943 -4.7554 20 6 7.3706 3.6457 -6.1446 21 6 8.2353 2.6829 -6.6301 22 6 8.0427 2.1852 -7.9095 23 6 6.9831 2.6772 -8.6565 24 6 6.1599 3.6400 -8.1045 25 7 6.3760 4.0940 -6.8852 26 6 7.2425 5.6708 -4.5248 27 6 8.7001 5.2062 -4.5515 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1767 0.0902 35 1 5.4317 -1.4505 1.5273 36 1 3.6268 2.2664 -2.4253 37 1 4.1458 0.8214 -3.3256 38 1 6.4034 1.0034 -2.3162 39 1 5.8843 2.4485 -1.4159 40 1 5.3733 2.8779 -4.1603 41 1 9.0508 2.3227 -6.0203 42 1 8.7023 1.4322 -8.3150 43 1 6.8030 2.3119 -9.6568 44 1 5.3326 4.0287 -8.6798 45 1 6.8817 6.2453 -5.3779 46 1 6.8198 5.9474 -3.5590 47 1 9.2365 5.1774 -3.6030 48 1 9.2981 5.4752 -5.4221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725756799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:53 Heat of formation + Delta-G solvation = -12.466669 kcal Electronic energy + Delta-G solvation = -28646.768122 eV Core-core repulsion = 24702.918365 eV Total energy + Delta-G solvation = -3943.849756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74817 -40.46903 -38.90662 -37.74810 -37.22212 -35.70616 -33.36886 -33.32455 -31.97434 -31.12026 -29.25470 -27.12425 -26.43214 -25.28623 -24.57301 -24.06844 -23.16793 -23.11609 -21.87606 -20.77817 -18.89835 -18.61508 -17.39944 -17.28986 -17.13853 -17.07742 -16.70403 -16.52891 -16.40236 -16.11004 -15.76319 -15.46911 -15.31332 -15.22362 -14.72266 -14.63928 -14.27486 -14.09747 -13.80916 -13.59483 -13.39965 -12.94148 -12.77817 -12.72498 -12.49138 -12.46697 -12.38852 -12.27412 -11.98006 -11.81247 -11.76578 -11.63089 -11.52492 -11.05608 -10.81266 -10.48575 -10.40426 -10.31884 -10.13873 -9.90048 -8.60954 -7.76794 -5.33896 0.08809 0.33547 1.43544 1.45862 1.49297 1.58791 2.03461 2.57282 2.60639 2.89361 3.12364 3.22558 3.36870 3.59095 3.67992 3.80622 3.87383 3.99075 4.07418 4.21214 4.23251 4.27275 4.30980 4.44484 4.50639 4.54883 4.61782 4.66483 4.67362 4.73703 4.75352 4.84086 4.85596 4.90510 4.92197 4.94872 5.06218 5.15357 5.18022 5.20800 5.27657 5.43425 5.70179 5.75816 5.85620 6.44547 6.49359 6.68438 6.99929 7.16057 7.21158 7.89582 8.36444 9.20674 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.002823 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.994941 B = 9916.233119 C =10099.755004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.058 3.942 4 C 0.132 3.868 5 N -0.584 5.584 6 C -0.243 4.243 7 H 0.053 0.947 8 C -0.028 4.028 9 N -0.919 5.919 10 Si 0.951 3.049 11 H -0.289 1.289 12 H -0.294 1.294 13 H -0.274 1.274 14 C 0.145 3.855 15 C 0.120 3.880 16 N -0.705 5.705 17 C 0.549 3.451 18 O -0.581 6.581 19 C -0.130 4.130 20 C 0.151 3.849 21 C -0.175 4.175 22 C -0.076 4.076 23 C -0.165 4.165 24 C 0.093 3.907 25 N -0.489 5.489 26 C -0.117 4.117 27 C -0.129 4.129 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.028 0.972 39 H 0.040 0.960 40 H 0.410 0.590 41 H 0.124 0.876 42 H 0.158 0.842 43 H 0.169 0.831 44 H 0.187 0.813 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 13.235 -18.158 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.006 3.994 5 N -0.304 5.304 6 C -0.373 4.373 7 H 0.070 0.930 8 C -0.225 4.225 9 N -0.564 5.564 10 Si 0.781 3.219 11 H -0.217 1.217 12 H -0.221 1.221 13 H -0.199 1.199 14 C 0.018 3.982 15 C -0.006 4.006 16 N -0.355 5.355 17 C 0.335 3.665 18 O -0.461 6.461 19 C -0.134 4.134 20 C 0.014 3.986 21 C -0.195 4.195 22 C -0.102 4.102 23 C -0.184 4.184 24 C -0.064 4.064 25 N -0.198 5.198 26 C -0.154 4.154 27 C -0.167 4.167 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.246 0.754 41 H 0.142 0.858 42 H 0.176 0.824 43 H 0.186 0.814 44 H 0.204 0.796 45 H 0.143 0.857 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.608 13.410 -17.089 21.731 hybrid contribution 0.214 -1.682 0.101 1.699 sum -0.394 11.727 -16.988 20.647 Atomic orbital electron populations 1.22823 0.81634 1.02571 1.00084 1.88153 1.19548 1.28687 1.95185 1.23166 0.96348 0.84037 0.98546 1.21099 0.90081 0.96367 0.91836 1.43864 1.74809 1.02297 1.09432 1.19037 1.37954 0.82875 0.97459 0.92959 1.25519 0.97559 1.00810 0.98586 1.70042 1.39093 1.36761 1.10542 0.85542 0.78004 0.82004 0.76400 1.21662 1.22088 1.19929 1.21125 0.90928 0.94639 0.91476 1.21953 0.99789 0.92234 0.86663 1.45924 1.13091 1.50551 1.25976 1.19828 0.81929 0.80196 0.84571 1.90693 1.46359 1.62096 1.46954 1.19795 1.11381 0.92336 0.89893 1.19705 0.92058 0.94205 0.92609 1.22044 1.01108 0.98509 0.97844 1.21939 0.97472 0.97986 0.92785 1.22561 0.95320 0.97887 1.02657 1.23344 0.98909 0.93588 0.90598 1.67375 1.18112 1.27112 1.07182 1.23064 0.97523 0.90243 1.04578 1.23124 0.91743 0.97241 1.04587 0.90082 0.93541 0.93747 0.93410 0.93988 0.90567 0.93249 0.94295 0.91488 0.92762 0.95371 0.94150 0.75433 0.85754 0.82429 0.81366 0.79643 0.85681 0.87946 0.88205 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.04 16 2 O -0.40 -17.19 10.18 -148.98 -1.52 -18.70 16 3 C 0.06 2.26 6.28 71.98 0.45 2.71 16 4 C 0.13 6.18 5.74 86.38 0.50 6.68 16 5 N -0.58 -28.62 2.44 -702.01 -1.71 -30.33 16 6 C -0.24 -13.43 8.98 84.03 0.75 -12.68 16 7 H 0.05 2.91 7.92 -2.91 -0.02 2.89 16 8 C -0.03 -1.61 4.98 84.86 0.42 -1.19 16 9 N -0.92 -55.15 11.22 21.65 0.24 -54.90 16 10 Si 0.95 46.97 29.61 68.60 2.03 49.01 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 14 C 0.15 5.82 5.78 86.38 0.50 6.32 16 15 C 0.12 5.01 6.00 86.38 0.52 5.53 16 16 N -0.70 -23.76 5.55 -463.07 -2.57 -26.33 16 17 C 0.55 19.13 7.06 87.66 0.62 19.75 16 18 O -0.58 -25.56 16.59 -3.03 -0.05 -25.61 16 19 C -0.13 -3.36 2.12 -53.68 -0.11 -3.47 16 20 C 0.15 3.59 5.91 42.55 0.25 3.85 16 21 C -0.17 -3.93 9.75 22.36 0.22 -3.71 16 22 C -0.08 -1.25 10.18 22.46 0.23 -1.02 16 23 C -0.16 -2.16 10.11 22.36 0.23 -1.94 16 24 C 0.09 1.43 11.18 84.67 0.95 2.38 16 25 N -0.49 -10.36 9.88 -183.89 -1.82 -12.18 16 26 C -0.12 -2.39 9.74 30.60 0.30 -2.09 16 27 C -0.13 -2.81 9.75 30.59 0.30 -2.51 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 4.23 5.24 -2.39 -0.01 4.22 16 34 H 0.05 2.13 8.07 -2.39 -0.02 2.11 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 37 H 0.05 2.13 8.01 -2.39 -0.02 2.11 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.41 11.65 8.48 -92.71 -0.79 10.87 16 41 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.13 2.19 8.00 -2.39 -0.02 2.17 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.10 2.42 7.91 -2.39 -0.02 2.40 16 48 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -74.91 406.90 2.14 -72.77 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.16 Total: 25.63 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.36 Total: 20.65 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.85 Total: -123.74 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.57 Total: -44.32 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.01 kcal Total: -74.91 2.14 -72.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725756799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.307 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds