Wall clock time and date at job start Tue Mar 31 2020 17:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35681 * 117.00263 * 2 1 4 4 C 1.38914 * 119.68381 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11288 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.47948 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35130 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47238 * 90.00037 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00208 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00107 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46953 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47482 * 294.99860 * 13 12 11 15 15 N 1.46500 * 109.47295 * 54.99578 * 13 12 11 16 16 C 1.36944 * 120.00088 * 204.99846 * 15 13 12 17 17 H 1.08004 * 119.99952 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99909 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00397 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00155 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46837 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47360 * 119.99562 * 20 18 16 23 23 H 1.48494 * 109.47309 * 239.99893 * 20 18 16 24 24 C 1.53001 * 109.47563 * 174.99865 * 13 12 11 25 25 C 1.52999 * 117.50173 * 248.74972 * 24 13 12 26 26 C 1.52997 * 117.50553 * 180.08855 * 24 13 12 27 27 C 1.38039 * 119.29144 * 0.25007 * 6 5 4 28 28 N 1.31964 * 120.83680 * 359.45709 * 27 6 5 29 29 H 1.08994 * 109.47181 * 59.99627 * 1 2 3 30 30 H 1.09003 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46736 * 299.99925 * 1 2 3 32 32 H 1.07999 * 120.45109 * 0.02633 * 4 3 2 33 33 H 1.07996 * 120.76435 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46953 * 209.99649 * 7 6 5 35 35 H 1.09000 * 109.47318 * 329.99247 * 7 6 5 36 36 H 1.09001 * 109.46832 * 299.99686 * 8 7 6 37 37 H 1.09004 * 109.47261 * 59.99705 * 8 7 6 38 38 H 0.97006 * 119.99798 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47062 * 299.99546 * 12 11 9 40 40 H 1.08996 * 109.47565 * 60.00082 * 12 11 9 41 41 H 0.96994 * 119.99980 * 25.00461 * 15 13 12 42 42 H 0.96998 * 120.00668 * 180.02562 * 19 18 16 43 43 H 1.09007 * 115.54668 * 34.41027 * 24 13 12 44 44 H 1.09012 * 117.49611 * 359.97438 * 25 24 13 45 45 H 1.08996 * 117.50229 * 145.01199 * 25 24 13 46 46 H 1.08999 * 117.49989 * 214.98189 * 26 24 13 47 47 H 1.09003 * 117.49803 * 359.97438 * 26 24 13 48 48 H 1.08005 * 119.58576 * 179.72422 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2505 3.6491 -0.0005 7 6 3.8769 5.0198 -0.0006 8 6 4.0894 5.4834 -1.4430 9 6 4.7152 6.8543 -1.4430 10 8 4.9669 7.4060 -0.3927 11 7 4.9962 7.4669 -2.6102 12 6 5.6050 8.7993 -2.6101 13 6 5.8175 9.2630 -4.0526 14 1 6.5450 8.6135 -4.5397 15 7 4.5459 9.2017 -4.7776 16 6 4.5404 9.0629 -6.1399 17 1 5.4735 8.9982 -6.6799 18 6 3.3356 9.0054 -6.8268 19 7 2.1984 9.0838 -6.1688 20 14 3.3280 8.8154 -8.6851 21 1 4.7260 8.7492 -9.1816 22 1 2.6133 7.5665 -9.0521 23 1 2.6388 9.9787 -9.2989 24 6 6.3368 10.7021 -4.0546 25 6 5.4008 11.7903 -4.5844 26 6 6.6116 11.3523 -5.4120 27 6 1.8772 3.5096 0.0048 28 7 1.3186 2.3140 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 4.0229 0.3695 0.0005 33 1 5.1255 2.5946 0.0000 34 1 3.2182 5.7202 0.5128 35 1 4.8371 4.9805 0.5138 36 1 4.7481 4.7829 -1.9564 37 1 3.1291 5.5227 -1.9573 38 1 4.7959 7.0251 -3.4503 39 1 4.9461 9.4998 -2.0971 40 1 6.5651 8.7601 -2.0956 41 1 3.7079 9.2595 -4.2926 42 1 1.3564 9.0432 -6.6487 43 1 6.9969 10.9648 -3.2278 44 1 4.4150 11.4808 -4.9319 45 1 5.4453 12.7689 -4.1065 46 1 7.4523 12.0429 -5.4783 47 1 6.4228 10.7546 -6.3038 48 1 1.2518 4.3902 0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731399229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:33 Heat of formation + Delta-G solvation = -9.633744 kcal Electronic energy + Delta-G solvation = -27638.877259 eV Core-core repulsion = 23695.150347 eV Total energy + Delta-G solvation = -3943.726912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.86102 -39.46322 -38.25645 -37.62387 -34.59929 -34.14732 -33.26694 -32.40345 -30.99018 -29.88018 -28.17851 -27.40693 -24.97536 -23.71750 -23.53211 -22.59037 -21.64285 -21.36467 -20.02506 -19.02299 -18.61580 -17.42657 -17.34143 -16.79995 -16.21054 -15.70191 -15.52992 -15.17067 -14.94922 -14.69743 -14.63050 -14.47385 -13.95262 -13.81427 -13.57491 -13.35435 -13.13678 -12.94829 -12.79310 -12.35280 -12.17468 -12.00540 -11.72158 -11.32413 -11.28820 -11.18579 -11.09357 -10.92398 -10.87806 -10.54291 -10.12115 -10.08468 -9.81190 -9.74585 -9.64138 -9.44705 -9.18446 -9.01973 -8.62277 -8.55914 -7.10379 -5.87512 -3.17625 0.93810 1.05342 2.87373 2.95115 3.35730 3.42496 3.44556 3.46619 3.66052 4.12188 4.46677 4.57907 4.62474 4.73219 4.77631 4.89404 5.01773 5.07568 5.08629 5.15527 5.28293 5.35881 5.39428 5.44186 5.46470 5.55814 5.62459 5.71626 5.72498 5.81088 5.82983 5.96541 6.03514 6.04019 6.07319 6.18805 6.25425 6.36529 6.44700 6.63246 6.73311 6.89698 6.98861 7.00122 7.25330 7.62600 7.64404 7.93672 8.29654 8.57364 9.42216 9.95910 10.32123 11.33924 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.002367 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.761381 B =11827.217745 C =13568.049888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.311 3.689 4 C -0.188 4.188 5 C -0.038 4.038 6 C -0.167 4.167 7 C -0.053 4.053 8 C -0.137 4.137 9 C 0.510 3.490 10 O -0.557 6.557 11 N -0.713 5.713 12 C 0.119 3.881 13 C 0.191 3.809 14 H 0.057 0.943 15 N -0.717 5.717 16 C -0.239 4.239 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.928 5.928 20 Si 0.902 3.098 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.178 4.178 25 C -0.163 4.163 26 C -0.176 4.176 27 C 0.144 3.856 28 N -0.538 5.538 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.102 0.898 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -12.838 12.168 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.132 3.868 4 C -0.209 4.209 5 C -0.063 4.063 6 C -0.169 4.169 7 C -0.092 4.092 8 C -0.177 4.177 9 C 0.296 3.704 10 O -0.437 6.437 11 N -0.364 5.364 12 C -0.005 4.005 13 C 0.081 3.919 14 H 0.074 0.926 15 N -0.359 5.359 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.575 5.575 20 Si 0.733 3.267 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.200 4.200 25 C -0.200 4.200 26 C -0.213 4.213 27 C -0.011 4.011 28 N -0.261 5.261 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.221 0.779 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.137 0.863 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.121 0.879 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.081 -12.836 12.705 18.180 hybrid contribution 0.174 0.054 -1.452 1.464 sum 2.255 -12.782 11.253 17.178 Atomic orbital electron populations 1.22848 0.77235 1.02827 1.02567 1.86221 1.22935 1.24716 1.87980 1.19864 0.89466 0.84730 0.92732 1.21053 0.91986 0.99544 1.08316 1.21364 1.00616 0.90712 0.93616 1.20802 0.94750 0.96574 1.04792 1.20169 1.01861 0.91299 0.95832 1.21660 1.02928 0.94507 0.98601 1.20554 0.78409 0.87588 0.83819 1.90664 1.54241 1.67273 1.31487 1.46017 1.62378 1.19071 1.08936 1.21557 0.97514 0.83331 0.98139 1.19997 0.90138 0.92214 0.89579 0.92562 1.42477 1.01818 1.87177 1.04418 1.19202 0.92324 1.42400 0.83070 0.91036 1.24707 0.95386 1.02728 0.97644 1.69661 0.96599 1.56978 1.34299 0.86205 0.77281 0.77273 0.85923 1.20597 1.21949 1.21913 1.23075 1.03475 0.96685 0.96726 1.22913 0.97569 0.96307 1.03213 1.22855 0.99069 1.03520 0.95871 1.22388 0.92388 0.93594 0.92740 1.67333 1.40916 0.98812 1.19014 0.92196 0.88737 0.92345 0.84203 0.84021 0.89856 0.90070 0.89025 0.88542 0.75331 0.91758 0.91964 0.77936 0.93496 0.89644 0.86347 0.91285 0.91024 0.87933 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.40 10.48 -18.75 -0.20 -3.60 16 3 C 0.31 3.60 7.49 -17.12 -0.13 3.47 16 4 C -0.19 -1.84 10.04 -39.28 -0.39 -2.23 16 5 C -0.04 -0.34 9.85 -39.31 -0.39 -0.73 16 6 C -0.17 -1.66 5.15 -104.47 -0.54 -2.20 16 7 C -0.05 -0.55 4.66 -27.88 -0.13 -0.68 16 8 C -0.14 -1.54 5.68 -27.89 -0.16 -1.70 16 9 C 0.51 7.62 7.83 -10.99 -0.09 7.53 16 10 O -0.56 -9.98 15.98 5.56 0.09 -9.89 16 11 N -0.71 -11.02 5.39 -60.30 -0.32 -11.35 16 12 C 0.12 1.94 5.22 -4.05 -0.02 1.92 16 13 C 0.19 3.41 2.86 -67.93 -0.19 3.22 16 14 H 0.06 1.02 8.08 -51.92 -0.42 0.60 16 15 N -0.72 -15.49 3.08 -53.42 -0.16 -15.66 16 16 C -0.24 -5.83 8.15 -15.06 -0.12 -5.95 16 17 H 0.07 1.74 6.91 -52.48 -0.36 1.37 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -25.82 13.06 55.49 0.72 -25.09 16 20 Si 0.90 21.07 29.55 -169.99 -5.02 16.05 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.18 -3.04 5.70 -90.62 -0.52 -3.56 16 25 C -0.16 -3.01 9.74 -26.70 -0.26 -3.27 16 26 C -0.18 -3.09 9.87 -26.70 -0.26 -3.36 16 27 C 0.14 1.56 10.85 -17.57 -0.19 1.37 16 28 N -0.54 -6.47 9.22 -13.33 -0.12 -6.60 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 35 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.41 6.41 8.14 -40.82 -0.33 6.08 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.39 9.21 7.80 -40.82 -0.32 8.89 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.09 1.31 8.11 -51.92 -0.42 0.88 16 44 H 0.12 2.62 6.68 -51.92 -0.35 2.27 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 2.01 6.22 -51.93 -0.32 1.69 16 48 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -29.71 400.78 -8.98 -38.69 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.56 Total: 16.49 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.44 Total: -5.08 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.11 Total: -58.69 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.11 Total: -13.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.71 -8.98 -38.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731399229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.058 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds