Wall clock time and date at job start Tue Mar 31 2020 17:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35681 * 117.00263 * 2 1 4 4 C 1.38914 * 119.68381 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11288 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.47948 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35130 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47238 * 90.00037 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00208 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00107 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46953 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47482 * 294.99860 * 13 12 11 15 15 N 1.46500 * 109.47295 * 54.99578 * 13 12 11 16 16 C 1.36944 * 120.00088 * 204.99846 * 15 13 12 17 17 H 1.08004 * 119.99952 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99909 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00397 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00155 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46837 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47360 * 119.99562 * 20 18 16 23 23 H 1.48494 * 109.47309 * 239.99893 * 20 18 16 24 24 C 1.53001 * 109.47563 * 174.99865 * 13 12 11 25 25 C 1.52999 * 117.50173 * 248.74972 * 24 13 12 26 26 C 1.52997 * 117.50553 * 180.08855 * 24 13 12 27 27 C 1.38039 * 119.29144 * 0.25007 * 6 5 4 28 28 N 1.31964 * 120.83680 * 359.45709 * 27 6 5 29 29 H 1.08994 * 109.47181 * 59.99627 * 1 2 3 30 30 H 1.09003 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46736 * 299.99925 * 1 2 3 32 32 H 1.07999 * 120.45109 * 0.02633 * 4 3 2 33 33 H 1.07996 * 120.76435 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46953 * 209.99649 * 7 6 5 35 35 H 1.09000 * 109.47318 * 329.99247 * 7 6 5 36 36 H 1.09001 * 109.46832 * 299.99686 * 8 7 6 37 37 H 1.09004 * 109.47261 * 59.99705 * 8 7 6 38 38 H 0.97006 * 119.99798 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47062 * 299.99546 * 12 11 9 40 40 H 1.08996 * 109.47565 * 60.00082 * 12 11 9 41 41 H 0.96994 * 119.99980 * 25.00461 * 15 13 12 42 42 H 0.96998 * 120.00668 * 180.02562 * 19 18 16 43 43 H 1.09007 * 115.54668 * 34.41027 * 24 13 12 44 44 H 1.09012 * 117.49611 * 359.97438 * 25 24 13 45 45 H 1.08996 * 117.50229 * 145.01199 * 25 24 13 46 46 H 1.08999 * 117.49989 * 214.98189 * 26 24 13 47 47 H 1.09003 * 117.49803 * 359.97438 * 26 24 13 48 48 H 1.08005 * 119.58576 * 179.72422 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2505 3.6491 -0.0005 7 6 3.8769 5.0198 -0.0006 8 6 4.0894 5.4834 -1.4430 9 6 4.7152 6.8543 -1.4430 10 8 4.9669 7.4060 -0.3927 11 7 4.9962 7.4669 -2.6102 12 6 5.6050 8.7993 -2.6101 13 6 5.8175 9.2630 -4.0526 14 1 6.5450 8.6135 -4.5397 15 7 4.5459 9.2017 -4.7776 16 6 4.5404 9.0629 -6.1399 17 1 5.4735 8.9982 -6.6799 18 6 3.3356 9.0054 -6.8268 19 7 2.1984 9.0838 -6.1688 20 14 3.3280 8.8154 -8.6851 21 1 4.7260 8.7492 -9.1816 22 1 2.6133 7.5665 -9.0521 23 1 2.6388 9.9787 -9.2989 24 6 6.3368 10.7021 -4.0546 25 6 5.4008 11.7903 -4.5844 26 6 6.6116 11.3523 -5.4120 27 6 1.8772 3.5096 0.0048 28 7 1.3186 2.3140 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 4.0229 0.3695 0.0005 33 1 5.1255 2.5946 0.0000 34 1 3.2182 5.7202 0.5128 35 1 4.8371 4.9805 0.5138 36 1 4.7481 4.7829 -1.9564 37 1 3.1291 5.5227 -1.9573 38 1 4.7959 7.0251 -3.4503 39 1 4.9461 9.4998 -2.0971 40 1 6.5651 8.7601 -2.0956 41 1 3.7079 9.2595 -4.2926 42 1 1.3564 9.0432 -6.6487 43 1 6.9969 10.9648 -3.2278 44 1 4.4150 11.4808 -4.9319 45 1 5.4453 12.7689 -4.1065 46 1 7.4523 12.0429 -5.4783 47 1 6.4228 10.7546 -6.3038 48 1 1.2518 4.3902 0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731399229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:33 Heat of formation + Delta-G solvation = -28.696555 kcal Electronic energy + Delta-G solvation = -27639.703884 eV Core-core repulsion = 23695.150347 eV Total energy + Delta-G solvation = -3944.553537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64547 -40.68782 -39.20909 -38.92989 -35.89308 -35.13562 -34.99967 -33.18486 -32.59526 -30.92198 -29.58225 -28.18649 -26.08320 -25.29780 -24.41154 -23.86381 -22.97794 -22.37442 -21.27324 -20.44613 -19.36792 -19.20982 -18.12750 -18.03932 -17.04532 -16.96500 -16.78691 -16.34845 -16.33137 -15.95413 -15.50157 -15.41704 -15.29640 -15.18486 -14.65583 -14.52366 -14.25983 -14.11758 -13.96385 -13.52796 -13.17711 -12.91896 -12.89345 -12.84804 -12.63018 -12.55460 -12.50361 -12.09305 -12.05010 -11.97932 -11.91418 -11.58216 -11.03719 -11.00896 -10.85268 -10.70589 -10.60754 -10.56687 -9.92067 -9.35843 -8.97272 -7.87398 -5.14363 0.15453 0.29656 1.48486 1.51864 1.58324 1.75994 2.16395 2.37146 2.59353 2.78015 3.15242 3.36410 3.47882 3.71872 3.91243 3.96202 4.01521 4.02801 4.07924 4.23486 4.28073 4.34937 4.35751 4.40403 4.41721 4.46453 4.54229 4.61888 4.68937 4.73498 4.75052 4.77849 4.95889 4.97873 4.97984 5.02565 5.20504 5.21670 5.29359 5.40462 5.44740 5.51470 5.63325 5.68329 5.69650 6.23555 6.33046 6.69572 6.84983 7.35448 7.41733 8.12895 8.38048 9.35035 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.002367 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.761381 B =11827.217745 C =13568.049888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.290 3.710 4 C -0.190 4.190 5 C -0.033 4.033 6 C -0.165 4.165 7 C -0.043 4.043 8 C -0.129 4.129 9 C 0.509 3.491 10 O -0.587 6.587 11 N -0.714 5.714 12 C 0.128 3.872 13 C 0.192 3.808 14 H 0.061 0.939 15 N -0.719 5.719 16 C -0.214 4.214 17 H 0.076 0.924 18 C -0.067 4.067 19 N -0.963 5.963 20 Si 0.954 3.046 21 H -0.268 1.268 22 H -0.299 1.299 23 H -0.304 1.304 24 C -0.168 4.168 25 C -0.174 4.174 26 C -0.171 4.171 27 C 0.130 3.870 28 N -0.558 5.558 29 H 0.051 0.949 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.410 0.590 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.374 0.626 42 H 0.246 0.754 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -13.531 12.529 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.112 3.888 4 C -0.211 4.211 5 C -0.058 4.058 6 C -0.168 4.168 7 C -0.082 4.082 8 C -0.168 4.168 9 C 0.297 3.703 10 O -0.469 6.469 11 N -0.365 5.365 12 C 0.004 3.996 13 C 0.083 3.917 14 H 0.079 0.921 15 N -0.359 5.359 16 C -0.346 4.346 17 H 0.094 0.906 18 C -0.259 4.259 19 N -0.615 5.615 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.227 1.227 23 H -0.232 1.232 24 C -0.189 4.189 25 C -0.212 4.212 26 C -0.208 4.208 27 C -0.025 4.025 28 N -0.282 5.282 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.247 0.753 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.207 0.793 42 H 0.055 0.945 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.097 0.903 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.385 -13.536 13.064 19.316 hybrid contribution -0.462 0.289 -1.508 1.604 sum 3.923 -13.246 11.556 18.011 Atomic orbital electron populations 1.23002 0.76187 1.04494 1.01985 1.86205 1.24085 1.24648 1.88039 1.20234 0.90404 0.84799 0.93404 1.21351 0.91464 1.00691 1.07544 1.21689 1.01917 0.89950 0.92243 1.20756 0.94447 0.96668 1.04909 1.20054 1.01828 0.91242 0.95070 1.21659 1.03014 0.92599 0.99561 1.21134 0.77626 0.88536 0.82957 1.90651 1.55530 1.68301 1.32384 1.46046 1.62435 1.18776 1.09244 1.21409 0.97967 0.83514 0.96747 1.20141 0.88395 0.93071 0.90125 0.92123 1.42527 1.02787 1.86948 1.03668 1.19434 0.91968 1.38893 0.84278 0.90627 1.25276 0.95486 1.04521 1.00641 1.69792 0.96735 1.59788 1.35141 0.85350 0.77428 0.76156 0.82487 1.19236 1.22694 1.23212 1.23081 1.03000 0.95364 0.97497 1.22772 0.95956 0.97855 1.04580 1.22849 0.99356 1.03638 0.94994 1.22611 0.93176 0.93608 0.93144 1.67305 1.41710 0.99341 1.19842 0.92996 0.85973 0.92686 0.82251 0.81268 0.90796 0.89678 0.86828 0.88420 0.75350 0.93336 0.90317 0.79346 0.94485 0.86716 0.90456 0.89200 0.88102 0.90287 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.38 113.37 1.18 1.79 16 2 O -0.32 -6.87 10.48 -89.99 -0.94 -7.82 16 3 C 0.29 6.54 7.49 84.79 0.63 7.17 16 4 C -0.19 -3.39 10.04 22.47 0.23 -3.16 16 5 C -0.03 -0.52 9.85 22.45 0.22 -0.30 16 6 C -0.17 -3.06 5.15 -19.77 -0.10 -3.16 16 7 C -0.04 -0.83 4.66 29.85 0.14 -0.69 16 8 C -0.13 -2.68 5.68 29.85 0.17 -2.51 16 9 C 0.51 14.58 7.83 87.66 0.69 15.27 16 10 O -0.59 -20.43 15.98 -3.03 -0.05 -20.48 16 11 N -0.71 -21.25 5.39 -463.08 -2.49 -23.75 16 12 C 0.13 3.99 5.22 86.38 0.45 4.44 16 13 C 0.19 6.54 2.86 44.99 0.13 6.67 16 14 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 15 N -0.72 -30.93 3.08 -322.93 -0.99 -31.93 16 16 C -0.21 -10.36 8.15 84.03 0.69 -9.67 16 17 H 0.08 3.58 6.91 -2.91 -0.02 3.56 16 18 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 19 N -0.96 -54.90 13.06 21.65 0.28 -54.61 16 20 Si 0.95 43.74 29.55 68.60 2.03 45.76 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 C -0.17 -5.35 5.70 -10.79 -0.06 -5.41 16 25 C -0.17 -6.22 9.74 30.62 0.30 -5.93 16 26 C -0.17 -5.64 9.87 30.62 0.30 -5.34 16 27 C 0.13 2.75 10.85 84.63 0.92 3.67 16 28 N -0.56 -13.40 9.22 -308.95 -2.85 -16.25 16 29 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 32 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.07 1.56 8.05 -2.39 -0.02 1.55 16 35 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.41 12.38 8.14 -92.70 -0.75 11.62 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.37 18.10 7.80 -92.71 -0.72 17.38 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.17 16 43 H 0.11 3.05 8.11 -2.38 -0.02 3.03 16 44 H 0.08 3.46 6.68 -2.38 -0.02 3.45 16 45 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.08 2.99 6.22 -2.39 -0.01 2.97 16 48 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -64.45 400.78 0.82 -63.63 By element: Atomic # 1 Polarization: 46.13 SS G_CDS: -0.50 Total: 45.63 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.34 Total: -0.19 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.05 Total: -126.53 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.99 Total: -28.29 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -64.45 0.82 -63.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731399229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.930 kcal (2) G-P(sol) polarization free energy of solvation -64.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds