Wall clock time and date at job start Tue Mar 31 2020 17:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42887 * 1 3 3 C 1.35740 * 117.00727 * 2 1 4 4 C 1.39288 * 120.83806 * 0.02562 * 3 2 1 5 5 C 1.37956 * 119.08994 * 179.97438 * 4 3 2 6 6 N 1.31980 * 120.82427 * 359.97438 * 5 4 3 7 7 C 1.31955 * 121.86144 * 359.75485 * 6 5 4 8 8 C 1.37993 * 120.82204 * 0.53336 * 7 6 5 9 9 C 1.50694 * 120.45673 * 179.72804 * 8 7 6 10 10 C 1.50699 * 109.47554 * 264.72595 * 9 8 7 11 11 O 1.21286 * 119.99302 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00187 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00002 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47161 * 180.02562 * 13 12 10 15 15 H 1.08992 * 109.70242 * 298.96540 * 14 13 12 16 16 C 1.52757 * 109.50956 * 178.84771 * 14 13 12 17 17 C 1.53039 * 109.38399 * 185.70812 * 16 14 13 18 18 C 1.53036 * 109.53770 * 61.24048 * 17 16 14 19 19 C 1.53194 * 109.31381 * 298.63276 * 18 17 16 20 20 N 1.46924 * 109.58371 * 59.32445 * 14 13 12 21 21 C 1.36939 * 120.63504 * 353.41207 * 20 14 13 22 22 H 1.08002 * 119.99660 * 30.60933 * 21 20 14 23 23 C 1.38814 * 120.00257 * 210.60839 * 21 20 14 24 24 N 1.31615 * 119.99884 * 22.33592 * 23 21 20 25 25 Si 1.86803 * 119.99793 * 202.33735 * 23 21 20 26 26 H 1.48495 * 109.46865 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47033 * 299.99985 * 25 23 21 28 28 H 1.48497 * 109.47008 * 59.99798 * 25 23 21 29 29 H 1.09009 * 109.47101 * 59.99912 * 1 2 3 30 30 H 1.09003 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47621 * 300.00052 * 1 2 3 32 32 H 1.07997 * 120.46003 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.58987 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.59036 * 180.26333 * 7 6 5 35 35 H 1.09009 * 109.47080 * 144.72422 * 9 8 7 36 36 H 1.09001 * 109.47278 * 24.72845 * 9 8 7 37 37 H 0.97002 * 120.00221 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.46932 * 60.00023 * 13 12 10 39 39 H 1.09000 * 109.46980 * 299.99990 * 13 12 10 40 40 H 1.08998 * 109.56367 * 65.66718 * 16 14 13 41 41 H 1.09003 * 109.38768 * 305.63798 * 16 14 13 42 42 H 1.08999 * 109.45770 * 301.21586 * 17 16 14 43 43 H 1.09005 * 109.44562 * 181.25558 * 17 16 14 44 44 H 1.09000 * 109.49571 * 178.68134 * 18 17 16 45 45 H 1.09004 * 109.49707 * 58.58889 * 18 17 16 46 46 H 1.08994 * 109.58513 * 294.85248 * 19 18 17 47 47 H 1.08996 * 109.70251 * 174.49337 * 19 18 17 48 48 H 0.96997 * 120.00238 * 5.30013 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2866 3.6457 0.0016 7 6 4.0231 2.5508 0.0064 8 6 3.4346 1.3027 0.0001 9 6 4.2837 0.0578 -0.0005 10 6 4.4646 -0.4264 -1.4161 11 8 3.9537 0.1797 -2.3341 12 7 5.1939 -1.5327 -1.6619 13 6 5.3701 -2.0030 -3.0382 14 6 6.2322 -3.2671 -3.0387 15 1 7.2137 -3.0427 -2.6214 16 6 6.3927 -3.7745 -4.4706 17 6 7.1333 -5.1137 -4.4549 18 6 6.3179 -6.1402 -3.6653 19 6 6.1597 -5.6582 -2.2198 20 7 5.5803 -4.3081 -2.2324 21 6 4.4511 -4.0267 -1.5106 22 1 3.7587 -3.2761 -1.8620 23 6 4.1963 -4.7064 -0.3274 24 7 5.1844 -5.2735 0.3316 25 14 2.4511 -4.8161 0.3296 26 1 2.4472 -5.5886 1.5977 27 1 1.9304 -3.4485 0.5821 28 1 1.5884 -5.4976 -0.6686 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2245 2.3567 0.0005 33 1 1.4009 4.5174 0.0011 34 1 5.1000 2.6326 0.0109 35 1 3.7930 -0.7170 0.5887 36 1 5.2579 0.2822 0.4340 37 1 5.6028 -2.0172 -0.9277 38 1 5.8607 -1.2280 -3.6270 39 1 4.3961 -2.2278 -3.4729 40 1 6.9626 -3.0504 -5.0527 41 1 5.4084 -3.9083 -4.9195 42 1 8.1078 -4.9842 -3.9840 43 1 7.2680 -5.4659 -5.4776 44 1 6.8346 -7.0999 -3.6744 45 1 5.3341 -6.2519 -4.1214 46 1 7.1353 -5.6328 -1.7344 47 1 5.4991 -6.3344 -1.6772 48 1 6.0993 -5.1522 0.0330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731536708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:51 Heat of formation + Delta-G solvation = -22.720024 kcal Electronic energy + Delta-G solvation = -29950.510247 eV Core-core repulsion = 26006.215872 eV Total energy + Delta-G solvation = -3944.294375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.71611 -39.09661 -38.13015 -37.80330 -34.19228 -33.36791 -33.13830 -31.17510 -30.87324 -29.74983 -28.14266 -27.44605 -25.76575 -24.56945 -22.86560 -22.43002 -22.06718 -20.86954 -19.74828 -19.11005 -18.30716 -17.35164 -17.08927 -16.32258 -15.70172 -15.66812 -15.48458 -14.92805 -14.76564 -14.32653 -14.22067 -14.00679 -13.72828 -13.62084 -13.51363 -13.28567 -13.21467 -12.85806 -12.46424 -12.31016 -12.12942 -11.88005 -11.57523 -11.48776 -11.31906 -11.16467 -11.05583 -10.74014 -10.41470 -10.26395 -10.10038 -10.00554 -9.75204 -9.52018 -9.40256 -9.17569 -9.03728 -8.58421 -8.50462 -8.16669 -6.90818 -6.07620 -3.31623 1.12746 1.42848 3.17830 3.28471 3.45885 3.47823 3.65287 3.72818 4.09127 4.45874 4.51844 4.65939 4.81594 4.97026 5.06930 5.07885 5.11117 5.29487 5.32793 5.41053 5.42863 5.47686 5.49584 5.53221 5.61742 5.69357 5.83319 5.84992 5.97169 6.03296 6.06061 6.18878 6.22706 6.26205 6.30750 6.48882 6.52711 6.58371 6.59637 6.68603 6.85266 7.07638 7.16183 7.23165 7.24776 8.03565 8.04415 8.30704 8.54370 8.93573 9.04070 9.78233 10.23808 11.17260 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.003992 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.151140 B = 7012.915187 C = 8316.868227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.298 6.298 3 C 0.184 3.816 4 C -0.264 4.264 5 C 0.127 3.873 6 N -0.510 5.510 7 C 0.140 3.860 8 C -0.137 4.137 9 C -0.093 4.093 10 C 0.514 3.486 11 O -0.562 6.562 12 N -0.692 5.692 13 C 0.139 3.861 14 C 0.163 3.837 15 H 0.029 0.971 16 C -0.128 4.128 17 C -0.107 4.107 18 C -0.139 4.139 19 C 0.152 3.848 20 N -0.596 5.596 21 C -0.344 4.344 22 H 0.063 0.937 23 C -0.018 4.018 24 N -0.916 5.916 25 Si 1.053 2.947 26 H -0.287 1.287 27 H -0.287 1.287 28 H -0.295 1.295 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.413 0.587 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.016 0.984 47 H 0.077 0.923 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 9.558 -0.870 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.208 6.208 3 C 0.130 3.870 4 C -0.285 4.285 5 C -0.029 4.029 6 N -0.223 5.223 7 C -0.015 4.015 8 C -0.141 4.141 9 C -0.133 4.133 10 C 0.300 3.700 11 O -0.442 6.442 12 N -0.342 5.342 13 C 0.015 3.985 14 C 0.056 3.944 15 H 0.047 0.953 16 C -0.168 4.168 17 C -0.145 4.145 18 C -0.178 4.178 19 C 0.027 3.973 20 N -0.321 5.321 21 C -0.473 4.473 22 H 0.080 0.920 23 C -0.221 4.221 24 N -0.557 5.557 25 Si 0.883 3.117 26 H -0.212 1.212 27 H -0.214 1.214 28 H -0.223 1.223 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.251 0.749 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.095 0.905 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.034 9.897 -0.295 10.692 hybrid contribution 0.289 -0.479 -1.022 1.165 sum -3.744 9.419 -1.317 10.221 Atomic orbital electron populations 1.23135 0.78029 1.04526 1.01189 1.86183 1.21647 1.25888 1.87080 1.19170 0.91978 0.84775 0.91114 1.22145 1.01311 0.93206 1.11842 1.22448 0.90372 0.96725 0.93386 1.67695 1.07064 1.31928 1.15569 1.22461 1.00067 0.86159 0.92854 1.19798 0.90950 0.96543 1.06776 1.20409 1.00632 0.95853 0.96427 1.20238 0.78689 0.80706 0.90372 1.90635 1.49427 1.57766 1.46339 1.45947 1.51998 1.26209 1.10083 1.21194 1.00010 0.94239 0.83083 1.20617 0.94143 0.88462 0.91189 0.95320 1.21866 1.00297 0.96684 0.97929 1.21358 0.98550 0.95721 0.98867 1.22074 0.99362 0.96970 0.99382 1.20945 0.96628 0.87390 0.92385 1.44159 1.30249 1.03631 1.54058 1.20008 0.98636 1.25554 1.03117 0.91952 1.25726 1.04908 0.98808 0.92632 1.70793 1.00300 1.46100 1.38465 0.83684 0.75534 0.76468 0.76036 1.21242 1.21386 1.22272 0.92441 0.87806 0.92534 0.84591 0.82861 0.82412 0.87257 0.88143 0.74932 0.92921 0.91863 0.92900 0.92065 0.92861 0.93445 0.93332 0.92511 0.96554 0.90506 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.84 101.05 0.99 1.29 16 2 O -0.30 -4.85 9.76 -18.93 -0.18 -5.04 16 3 C 0.18 2.87 6.70 -38.82 -0.26 2.61 16 4 C -0.26 -3.38 9.11 -39.29 -0.36 -3.74 16 5 C 0.13 1.60 11.17 -17.59 -0.20 1.40 16 6 N -0.51 -7.41 10.36 -13.33 -0.14 -7.55 16 7 C 0.14 2.02 10.83 -17.59 -0.19 1.83 16 8 C -0.14 -2.17 4.40 -104.34 -0.46 -2.63 16 9 C -0.09 -1.47 5.61 -29.04 -0.16 -1.64 16 10 C 0.51 9.86 7.82 -10.99 -0.09 9.77 16 11 O -0.56 -12.44 16.03 5.55 0.09 -12.35 16 12 N -0.69 -13.33 3.79 -60.29 -0.23 -13.56 16 13 C 0.14 2.68 4.43 -4.04 -0.02 2.66 16 14 C 0.16 3.12 3.01 -67.82 -0.20 2.91 16 15 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 16 C -0.13 -2.15 5.34 -26.84 -0.14 -2.29 16 17 C -0.11 -1.72 5.89 -26.69 -0.16 -1.88 16 18 C -0.14 -2.51 6.08 -26.61 -0.16 -2.67 16 19 C 0.15 3.31 4.68 -3.71 -0.02 3.29 16 20 N -0.60 -13.35 2.81 -165.03 -0.46 -13.81 16 21 C -0.34 -8.51 6.84 -15.06 -0.10 -8.62 16 22 H 0.06 1.63 5.88 -52.49 -0.31 1.32 16 23 C -0.02 -0.47 4.74 -17.43 -0.08 -0.55 16 24 N -0.92 -25.14 12.50 55.49 0.69 -24.45 16 25 Si 1.05 24.14 29.97 -169.99 -5.10 19.05 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.06 0.58 7.71 -51.92 -0.40 0.18 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 32 H 0.14 1.33 6.47 -52.49 -0.34 0.99 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.11 1.83 7.77 -51.92 -0.40 1.43 16 36 H 0.10 1.27 8.06 -51.93 -0.42 0.85 16 37 H 0.41 8.22 7.32 -40.82 -0.30 7.92 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.36 7.47 -51.93 -0.39 0.98 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.02 0.36 7.81 -51.93 -0.41 -0.04 16 47 H 0.08 1.90 6.45 -51.93 -0.33 1.57 16 48 H 0.27 7.39 6.58 -40.82 -0.27 7.13 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -31.30 381.67 -8.60 -39.89 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.41 Total: 10.29 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.61 Total: 1.77 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.14 Total: -59.37 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.10 Total: -17.38 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.10 Total: 19.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.30 -8.60 -39.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731536708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.175 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds