Wall clock time and date at job start Tue Mar 31 2020 17:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42887 * 1 3 3 C 1.35740 * 117.00727 * 2 1 4 4 C 1.39288 * 120.83806 * 0.02562 * 3 2 1 5 5 C 1.37956 * 119.08994 * 179.97438 * 4 3 2 6 6 N 1.31980 * 120.82427 * 359.97438 * 5 4 3 7 7 C 1.31955 * 121.86144 * 359.75485 * 6 5 4 8 8 C 1.37993 * 120.82204 * 0.53336 * 7 6 5 9 9 C 1.50694 * 120.45673 * 179.72804 * 8 7 6 10 10 C 1.50699 * 109.47554 * 264.72595 * 9 8 7 11 11 O 1.21286 * 119.99302 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00187 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00002 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47161 * 180.02562 * 13 12 10 15 15 H 1.08992 * 109.70242 * 298.96540 * 14 13 12 16 16 C 1.52757 * 109.50956 * 178.84771 * 14 13 12 17 17 C 1.53039 * 109.38399 * 185.70812 * 16 14 13 18 18 C 1.53036 * 109.53770 * 61.24048 * 17 16 14 19 19 C 1.53194 * 109.31381 * 298.63276 * 18 17 16 20 20 N 1.46924 * 109.58371 * 59.32445 * 14 13 12 21 21 C 1.36939 * 120.63504 * 353.41207 * 20 14 13 22 22 H 1.08002 * 119.99660 * 30.60933 * 21 20 14 23 23 C 1.38814 * 120.00257 * 210.60839 * 21 20 14 24 24 N 1.31615 * 119.99884 * 22.33592 * 23 21 20 25 25 Si 1.86803 * 119.99793 * 202.33735 * 23 21 20 26 26 H 1.48495 * 109.46865 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47033 * 299.99985 * 25 23 21 28 28 H 1.48497 * 109.47008 * 59.99798 * 25 23 21 29 29 H 1.09009 * 109.47101 * 59.99912 * 1 2 3 30 30 H 1.09003 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47621 * 300.00052 * 1 2 3 32 32 H 1.07997 * 120.46003 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.58987 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.59036 * 180.26333 * 7 6 5 35 35 H 1.09009 * 109.47080 * 144.72422 * 9 8 7 36 36 H 1.09001 * 109.47278 * 24.72845 * 9 8 7 37 37 H 0.97002 * 120.00221 * 359.97438 * 12 10 9 38 38 H 1.08996 * 109.46932 * 60.00023 * 13 12 10 39 39 H 1.09000 * 109.46980 * 299.99990 * 13 12 10 40 40 H 1.08998 * 109.56367 * 65.66718 * 16 14 13 41 41 H 1.09003 * 109.38768 * 305.63798 * 16 14 13 42 42 H 1.08999 * 109.45770 * 301.21586 * 17 16 14 43 43 H 1.09005 * 109.44562 * 181.25558 * 17 16 14 44 44 H 1.09000 * 109.49571 * 178.68134 * 18 17 16 45 45 H 1.09004 * 109.49707 * 58.58889 * 18 17 16 46 46 H 1.08994 * 109.58513 * 294.85248 * 19 18 17 47 47 H 1.08996 * 109.70251 * 174.49337 * 19 18 17 48 48 H 0.96997 * 120.00238 * 5.30013 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2866 3.6457 0.0016 7 6 4.0231 2.5508 0.0064 8 6 3.4346 1.3027 0.0001 9 6 4.2837 0.0578 -0.0005 10 6 4.4646 -0.4264 -1.4161 11 8 3.9537 0.1797 -2.3341 12 7 5.1939 -1.5327 -1.6619 13 6 5.3701 -2.0030 -3.0382 14 6 6.2322 -3.2671 -3.0387 15 1 7.2137 -3.0427 -2.6214 16 6 6.3927 -3.7745 -4.4706 17 6 7.1333 -5.1137 -4.4549 18 6 6.3179 -6.1402 -3.6653 19 6 6.1597 -5.6582 -2.2198 20 7 5.5803 -4.3081 -2.2324 21 6 4.4511 -4.0267 -1.5106 22 1 3.7587 -3.2761 -1.8620 23 6 4.1963 -4.7064 -0.3274 24 7 5.1844 -5.2735 0.3316 25 14 2.4511 -4.8161 0.3296 26 1 2.4472 -5.5886 1.5977 27 1 1.9304 -3.4485 0.5821 28 1 1.5884 -5.4976 -0.6686 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2245 2.3567 0.0005 33 1 1.4009 4.5174 0.0011 34 1 5.1000 2.6326 0.0109 35 1 3.7930 -0.7170 0.5887 36 1 5.2579 0.2822 0.4340 37 1 5.6028 -2.0172 -0.9277 38 1 5.8607 -1.2280 -3.6270 39 1 4.3961 -2.2278 -3.4729 40 1 6.9626 -3.0504 -5.0527 41 1 5.4084 -3.9083 -4.9195 42 1 8.1078 -4.9842 -3.9840 43 1 7.2680 -5.4659 -5.4776 44 1 6.8346 -7.0999 -3.6744 45 1 5.3341 -6.2519 -4.1214 46 1 7.1353 -5.6328 -1.7344 47 1 5.4991 -6.3344 -1.6772 48 1 6.0993 -5.1522 0.0330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731536708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:50 Heat of formation + Delta-G solvation = -42.198465 kcal Electronic energy + Delta-G solvation = -29951.354896 eV Core-core repulsion = 26006.215872 eV Total energy + Delta-G solvation = -3945.139024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81352 -40.62536 -39.42969 -39.14884 -35.74000 -35.16531 -34.35107 -32.42425 -32.18933 -31.50907 -29.34080 -28.43810 -27.41323 -26.21250 -23.89623 -23.79250 -23.53978 -22.40133 -21.27302 -20.69862 -19.37934 -19.08146 -18.17901 -17.81241 -17.20933 -17.02686 -16.75023 -16.03630 -15.93131 -15.90094 -15.60438 -15.45643 -15.17910 -15.07513 -14.96218 -14.76812 -14.38017 -14.12473 -13.96775 -13.80642 -13.46743 -13.18206 -13.10169 -12.81422 -12.74106 -12.53548 -12.49417 -12.12692 -11.97426 -11.97022 -11.72309 -11.64442 -11.29390 -11.06640 -10.82783 -10.53947 -10.42766 -10.09750 -9.82205 -9.72467 -8.79995 -8.07870 -5.30701 0.09488 0.34868 1.57241 1.60817 1.76505 1.79429 2.19889 2.41246 2.64758 2.88932 3.29611 3.48105 3.49639 3.65860 3.82001 3.91385 3.93182 4.06924 4.10502 4.17977 4.19967 4.28781 4.29645 4.31503 4.40241 4.45770 4.54379 4.62097 4.63543 4.67584 4.71419 4.79015 4.89144 4.95265 5.02032 5.09049 5.09725 5.15323 5.28082 5.30047 5.35636 5.58446 5.59489 5.66660 6.03211 6.23109 6.51653 6.75003 7.01416 7.13392 7.38414 7.85629 8.31764 9.14129 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.003992 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.151140 B = 7012.915187 C = 8316.868227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.162 3.838 4 C -0.261 4.261 5 C 0.127 3.873 6 N -0.527 5.527 7 C 0.136 3.864 8 C -0.163 4.163 9 C -0.084 4.084 10 C 0.513 3.487 11 O -0.593 6.593 12 N -0.693 5.693 13 C 0.144 3.856 14 C 0.162 3.838 15 H 0.034 0.966 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.131 4.131 19 C 0.156 3.844 20 N -0.609 5.609 21 C -0.323 4.323 22 H 0.048 0.952 23 C -0.059 4.059 24 N -0.943 5.943 25 Si 1.088 2.912 26 H -0.294 1.294 27 H -0.276 1.276 28 H -0.293 1.293 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.191 0.809 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.010 0.990 47 H 0.040 0.960 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 10.885 -1.744 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.108 3.892 4 C -0.281 4.281 5 C -0.029 4.029 6 N -0.240 5.240 7 C -0.020 4.020 8 C -0.166 4.166 9 C -0.124 4.124 10 C 0.301 3.699 11 O -0.475 6.475 12 N -0.343 5.343 13 C 0.020 3.980 14 C 0.057 3.943 15 H 0.052 0.948 16 C -0.163 4.163 17 C -0.139 4.139 18 C -0.170 4.170 19 C 0.031 3.969 20 N -0.335 5.335 21 C -0.453 4.453 22 H 0.065 0.935 23 C -0.257 4.257 24 N -0.585 5.585 25 Si 0.916 3.084 26 H -0.220 1.220 27 H -0.202 1.202 28 H -0.221 1.221 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.184 0.816 33 H 0.208 0.792 34 H 0.193 0.807 35 H 0.115 0.885 36 H 0.148 0.852 37 H 0.247 0.753 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.059 0.941 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.065 11.233 -1.191 12.005 hybrid contribution 0.262 -0.845 -0.803 1.195 sum -3.803 10.388 -1.995 11.241 Atomic orbital electron populations 1.23410 0.76015 1.05408 1.02966 1.86124 1.24014 1.26845 1.87363 1.19516 0.92407 0.85510 0.91789 1.22470 1.02780 0.92236 1.10614 1.23096 0.90026 0.98106 0.91676 1.67766 1.08152 1.31855 1.16208 1.22756 1.01099 0.85779 0.92331 1.19927 0.91438 0.96689 1.08558 1.20352 1.02316 0.95832 0.93924 1.20790 0.77604 0.80083 0.91471 1.90605 1.50533 1.58655 1.47677 1.45990 1.52043 1.26281 1.09954 1.21145 0.98696 0.94890 0.83271 1.20769 0.93729 0.87531 0.92321 0.94804 1.21826 1.00412 0.97976 0.96065 1.21344 0.98075 0.94349 1.00165 1.21964 0.99607 0.98697 0.96741 1.20816 0.95124 0.86507 0.94461 1.44333 1.30085 1.04879 1.54215 1.19919 0.98822 1.24136 1.02457 0.93472 1.26498 1.06535 0.99360 0.93340 1.70872 1.00072 1.48104 1.39485 0.83180 0.73237 0.76797 0.75229 1.22045 1.20170 1.22060 0.91345 0.87527 0.89987 0.81645 0.79245 0.80660 0.88519 0.85154 0.75343 0.91274 0.94612 0.89918 0.93232 0.92076 0.90510 0.91279 0.93668 0.97237 0.94133 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.84 113.37 1.12 1.46 16 2 O -0.33 -10.78 9.76 -90.64 -0.89 -11.67 16 3 C 0.16 4.95 6.70 22.76 0.15 5.10 16 4 C -0.26 -6.15 9.11 22.46 0.20 -5.94 16 5 C 0.13 2.88 11.17 84.60 0.95 3.83 16 6 N -0.53 -14.44 10.36 -196.08 -2.03 -16.47 16 7 C 0.14 3.79 10.83 84.62 0.92 4.70 16 8 C -0.16 -5.08 4.40 -19.68 -0.09 -5.16 16 9 C -0.08 -2.68 5.61 29.10 0.16 -2.52 16 10 C 0.51 19.86 7.82 87.66 0.69 20.55 16 11 O -0.59 -26.52 16.03 -3.05 -0.05 -26.57 16 12 N -0.69 -26.97 3.79 -463.06 -1.75 -28.73 16 13 C 0.14 5.54 4.43 86.38 0.38 5.93 16 14 C 0.16 6.09 3.01 44.83 0.13 6.22 16 15 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 16 C -0.12 -3.86 5.34 30.53 0.16 -3.70 16 17 C -0.10 -2.96 5.89 30.62 0.18 -2.78 16 18 C -0.13 -4.56 6.08 30.67 0.19 -4.37 16 19 C 0.16 6.86 4.68 86.36 0.40 7.27 16 20 N -0.61 -27.52 2.81 -676.04 -1.90 -29.42 16 21 C -0.32 -16.32 6.84 84.03 0.57 -15.74 16 22 H 0.05 2.53 5.88 -2.91 -0.02 2.52 16 23 C -0.06 -3.13 4.74 84.86 0.40 -2.73 16 24 N -0.94 -53.11 12.50 21.65 0.27 -52.84 16 25 Si 1.09 49.91 29.97 68.60 2.06 51.96 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 29 H 0.07 1.29 7.71 -2.38 -0.02 1.27 16 30 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.08 1.30 7.71 -2.38 -0.02 1.29 16 32 H 0.17 2.75 6.47 -2.91 -0.02 2.73 16 33 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.10 3.33 7.77 -2.38 -0.02 3.31 16 36 H 0.13 3.22 8.06 -2.39 -0.02 3.20 16 37 H 0.41 16.56 7.32 -92.71 -0.68 15.88 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.04 1.57 7.47 -2.39 -0.02 1.55 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.01 0.43 7.81 -2.39 -0.02 0.41 16 47 H 0.04 2.06 6.45 -2.39 -0.02 2.04 16 48 H 0.26 14.69 6.58 -92.71 -0.61 14.08 16 Total: -1.00 -69.42 381.67 2.68 -66.74 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.45 Total: 34.88 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.52 Total: 12.11 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -5.42 Total: -127.46 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.93 Total: -38.23 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.06 Total: 51.96 kcal Total: -69.42 2.68 -66.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731536708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.539 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds