Wall clock time and date at job start Tue Mar 31 2020 17:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99832 * 2 1 4 4 O 1.21278 * 119.99854 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00161 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.46912 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 3 8 8 C 1.38835 * 120.35249 * 89.99483 * 7 6 5 9 9 C 1.38383 * 118.48023 * 179.97438 * 8 7 6 10 10 C 1.38914 * 119.11272 * 0.02562 * 9 8 7 11 11 O 1.35679 * 119.68154 * 179.97438 * 10 9 8 12 12 N 1.32243 * 120.63108 * 0.02562 * 10 9 8 13 13 C 1.31965 * 121.64831 * 359.68509 * 12 10 9 14 14 C 1.46496 * 119.99896 * 179.97438 * 2 1 3 15 15 H 1.08998 * 109.46997 * 180.02562 * 14 2 1 16 16 C 1.53002 * 109.47338 * 300.00058 * 14 2 1 17 17 N 1.46496 * 109.46999 * 305.00213 * 16 14 2 18 18 C 1.36938 * 119.99681 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00216 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99488 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00510 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99654 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46935 * 89.99749 * 22 20 18 24 24 H 1.48498 * 109.46989 * 210.00003 * 22 20 18 25 25 H 1.48504 * 109.47072 * 330.00103 * 22 20 18 26 26 C 1.52999 * 109.46804 * 60.00105 * 14 2 1 27 27 C 1.53002 * 117.50072 * 248.74184 * 26 14 2 28 28 C 1.53008 * 117.49485 * 180.08636 * 26 14 2 29 29 H 1.08999 * 109.47333 * 89.99805 * 1 2 3 30 30 H 1.08997 * 109.47024 * 210.00620 * 1 2 3 31 31 H 1.09000 * 109.46875 * 330.00379 * 1 2 3 32 32 H 1.09002 * 109.47152 * 60.00245 * 5 3 2 33 33 H 1.09001 * 109.46980 * 300.00345 * 5 3 2 34 34 H 1.09001 * 109.47194 * 299.99742 * 6 5 3 35 35 H 1.08992 * 109.47399 * 59.99914 * 6 5 3 36 36 H 1.07991 * 120.75976 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.43855 * 179.97438 * 9 8 7 38 38 H 0.96702 * 114.00000 * 89.99865 * 11 10 9 39 39 H 1.08006 * 119.57851 * 180.31029 * 13 12 10 40 40 H 1.09004 * 109.47057 * 65.00020 * 16 14 2 41 41 H 1.08999 * 109.47072 * 184.99743 * 16 14 2 42 42 H 0.96998 * 120.00424 * 359.97438 * 17 16 14 43 43 H 0.96996 * 119.99801 * 180.02562 * 21 20 18 44 44 H 1.08999 * 115.55304 * 34.42086 * 26 14 2 45 45 H 1.09006 * 117.49413 * 0.02562 * 27 26 14 46 46 H 1.08994 * 117.50143 * 145.02275 * 27 26 14 47 47 H 1.09008 * 117.49504 * 214.97878 * 28 26 14 48 48 H 1.09000 * 117.50091 * 359.97328 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 6 1.6262 4.9404 -0.0023 8 6 1.2749 5.5488 1.1952 9 6 0.5838 6.7468 1.1488 10 6 0.2664 7.2966 -0.0868 11 8 -0.4114 8.4705 -0.1456 12 7 0.6176 6.6862 -1.2061 13 6 1.2818 5.5460 -1.1940 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0695 0.0009 16 6 1.8279 -2.0705 1.2502 17 7 2.0706 -1.2553 2.4429 18 6 1.8112 -1.7670 3.6863 19 1 1.4273 -2.7713 3.7876 20 6 2.0418 -0.9947 4.8165 21 7 2.5092 0.2295 4.6931 22 14 1.6872 -1.6924 6.5127 23 1 2.9016 -2.3710 7.0325 24 1 1.3045 -0.5902 7.4313 25 1 0.5738 -2.6709 6.4226 26 6 1.8278 -2.0715 -1.2483 27 6 1.0115 -3.3503 -1.0502 28 6 2.4913 -3.4380 -1.4317 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7584 2.5303 0.8892 33 1 0.7590 2.5298 -0.8908 34 1 3.0063 3.5779 0.8889 35 1 3.0063 3.5771 -0.8910 36 1 1.5357 5.0978 2.1411 37 1 0.2944 7.2472 2.0612 38 1 0.1572 9.2525 -0.1627 39 1 1.5562 5.0789 -2.1284 40 1 0.7741 -2.3459 1.2066 41 1 2.4376 -2.9728 1.2964 42 1 2.4158 -0.3534 2.3520 43 1 2.6706 0.7689 5.4829 44 1 1.6317 -1.4829 -2.1446 45 1 0.7374 -3.6194 -0.0301 46 1 0.2785 -3.6032 -1.8162 47 1 2.7312 -3.7485 -2.4487 48 1 3.1914 -3.7648 -0.6629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734304759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:38 Heat of formation + Delta-G solvation = 1.272724 kcal Electronic energy + Delta-G solvation = -28694.326059 eV Core-core repulsion = 24751.072088 eV Total energy + Delta-G solvation = -3943.253972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66312 -39.87801 -37.91483 -37.35605 -34.97748 -34.16185 -33.95644 -32.23923 -31.16965 -29.60799 -28.02421 -26.42844 -25.01099 -24.00940 -23.84469 -22.55665 -21.96887 -21.74189 -19.71118 -19.00242 -18.45766 -17.13107 -17.07079 -16.99214 -16.24837 -16.15198 -15.51223 -15.29472 -14.85445 -14.46551 -14.35378 -14.25313 -13.71094 -13.43275 -13.34968 -13.13765 -13.05019 -12.88857 -12.49340 -12.33430 -12.17178 -12.01297 -11.79632 -11.64837 -11.49256 -11.30051 -11.06882 -10.97415 -10.82226 -10.73852 -10.33139 -10.10981 -10.00247 -9.77675 -9.71640 -9.57992 -9.36055 -8.90116 -8.85274 -8.23827 -6.91838 -5.76172 -3.05091 0.80615 1.07320 3.02103 3.23886 3.32993 3.41869 3.47034 3.48344 3.65631 3.98352 4.49656 4.55120 4.58533 4.79219 4.85593 4.87602 4.94545 5.06611 5.13183 5.16552 5.17939 5.29356 5.38185 5.45199 5.49932 5.54472 5.63995 5.65651 5.75417 5.84057 5.85257 5.88096 5.93330 5.99239 6.07806 6.14302 6.26209 6.27530 6.29559 6.37888 6.38402 6.48211 6.69367 6.98719 7.26275 7.67749 7.73509 7.76834 8.41635 8.56759 9.53433 10.11712 10.47399 11.45985 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.003309 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.344921 B = 8459.444627 C =10867.171950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.595 5.595 3 C 0.519 3.481 4 O -0.541 6.541 5 C -0.131 4.131 6 C -0.061 4.061 7 C -0.135 4.135 8 C -0.054 4.054 9 C -0.181 4.181 10 C 0.297 3.703 11 O -0.485 6.485 12 N -0.504 5.504 13 C 0.124 3.876 14 C 0.161 3.839 15 H 0.103 0.897 16 C 0.143 3.857 17 N -0.727 5.727 18 C -0.240 4.240 19 H 0.068 0.932 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.157 4.157 27 C -0.184 4.184 28 C -0.174 4.174 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.398 0.602 39 H 0.160 0.840 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.386 0.614 43 H 0.254 0.746 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 7.895 -13.597 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.327 5.327 3 C 0.307 3.693 4 O -0.418 6.418 5 C -0.171 4.171 6 C -0.100 4.100 7 C -0.137 4.137 8 C -0.080 4.080 9 C -0.202 4.202 10 C 0.118 3.882 11 O -0.292 6.292 12 N -0.222 5.222 13 C -0.033 4.033 14 C 0.057 3.943 15 H 0.121 0.879 16 C 0.014 3.986 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.086 0.914 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.176 4.176 27 C -0.220 4.220 28 C -0.212 4.212 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.255 0.745 39 H 0.177 0.823 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.728 7.882 -14.214 16.927 hybrid contribution 0.266 -0.126 1.814 1.837 sum -4.462 7.756 -12.400 15.291 Atomic orbital electron populations 1.21682 0.79838 1.03865 1.00537 1.47599 1.06805 1.05469 1.72816 1.20475 0.87970 0.85245 0.75629 1.90689 1.13915 1.87246 1.49928 1.21641 0.99151 0.91937 1.04394 1.20281 0.96331 0.88089 1.05249 1.21009 1.00414 0.98324 0.93942 1.21609 0.93919 0.93327 0.99120 1.22134 1.01096 0.98447 0.98555 1.19177 0.92126 0.88730 0.88137 1.84786 1.34679 1.13783 1.95905 1.67146 1.11966 1.11107 1.31997 1.22440 0.93007 0.89969 0.97910 1.20808 0.97947 0.82579 0.92929 0.87890 1.21112 0.97680 0.93574 0.86203 1.42295 1.78764 1.15778 1.00299 1.19193 1.36267 0.97983 0.83689 0.91355 1.24723 1.02051 0.96313 0.97681 1.69680 1.51050 1.08690 1.28304 0.86228 0.77819 0.77687 0.84663 1.21752 1.21818 1.20834 1.22574 1.05502 0.90058 0.99515 1.23186 0.93976 1.01543 1.03340 1.22955 0.96128 0.99667 1.02409 0.93381 0.90447 0.91373 0.88445 0.89293 0.89232 0.89843 0.83724 0.84204 0.74516 0.82314 0.95667 0.95559 0.77966 0.93610 0.88010 0.87550 0.89332 0.89102 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 9.61 59.85 0.58 1.67 16 2 N -0.59 -9.43 2.24 -173.93 -0.39 -9.82 16 3 C 0.52 8.67 7.38 -10.98 -0.08 8.59 16 4 O -0.54 -10.98 15.31 5.56 0.09 -10.89 16 5 C -0.13 -1.67 4.23 -27.88 -0.12 -1.78 16 6 C -0.06 -0.74 4.66 -27.88 -0.13 -0.87 16 7 C -0.13 -1.49 5.15 -104.47 -0.54 -2.03 16 8 C -0.05 -0.59 9.85 -39.31 -0.39 -0.98 16 9 C -0.18 -1.89 10.04 -39.28 -0.39 -2.28 16 10 C 0.30 3.42 7.74 -17.12 -0.13 3.29 16 11 O -0.48 -4.82 13.56 -18.74 -0.25 -5.07 16 12 N -0.50 -6.31 10.39 -13.33 -0.14 -6.45 16 13 C 0.12 1.36 10.85 -17.57 -0.19 1.17 16 14 C 0.16 2.71 2.59 -67.93 -0.18 2.54 16 15 H 0.10 2.02 6.90 -51.93 -0.36 1.66 16 16 C 0.14 2.80 4.14 -4.04 -0.02 2.79 16 17 N -0.73 -18.31 5.43 -59.91 -0.33 -18.63 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 22 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.16 -2.07 5.48 -90.62 -0.50 -2.57 16 27 C -0.18 -2.18 9.59 -26.69 -0.26 -2.44 16 28 C -0.17 -2.09 9.94 -26.69 -0.27 -2.35 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.09 6.53 -51.93 -0.34 0.75 16 31 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.10 1.27 7.40 -51.93 -0.38 0.89 16 33 H 0.09 0.91 8.11 -51.93 -0.42 0.48 16 34 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 35 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 36 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.40 1.88 9.06 45.56 0.41 2.30 16 39 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.03 0.49 5.34 -51.93 -0.28 0.21 16 41 H 0.03 0.53 7.44 -51.93 -0.39 0.15 16 42 H 0.39 10.53 7.06 -40.82 -0.29 10.24 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.11 1.40 5.80 -51.93 -0.30 1.09 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 48 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -34.95 394.33 -8.65 -43.60 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.42 Total: 13.76 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.85 Total: -2.50 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.13 Total: -62.07 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.17 Total: -15.97 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.95 -8.65 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734304759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.871 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds