Wall clock time and date at job start Tue Mar 31 2020 17:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99832 * 2 1 4 4 O 1.21278 * 119.99854 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00161 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.46912 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 3 8 8 C 1.38835 * 120.35249 * 89.99483 * 7 6 5 9 9 C 1.38383 * 118.48023 * 179.97438 * 8 7 6 10 10 C 1.38914 * 119.11272 * 0.02562 * 9 8 7 11 11 O 1.35679 * 119.68154 * 179.97438 * 10 9 8 12 12 N 1.32243 * 120.63108 * 0.02562 * 10 9 8 13 13 C 1.31965 * 121.64831 * 359.68509 * 12 10 9 14 14 C 1.46496 * 119.99896 * 179.97438 * 2 1 3 15 15 H 1.08998 * 109.46997 * 180.02562 * 14 2 1 16 16 C 1.53002 * 109.47338 * 300.00058 * 14 2 1 17 17 N 1.46496 * 109.46999 * 305.00213 * 16 14 2 18 18 C 1.36938 * 119.99681 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00216 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99488 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00510 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99654 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46935 * 89.99749 * 22 20 18 24 24 H 1.48498 * 109.46989 * 210.00003 * 22 20 18 25 25 H 1.48504 * 109.47072 * 330.00103 * 22 20 18 26 26 C 1.52999 * 109.46804 * 60.00105 * 14 2 1 27 27 C 1.53002 * 117.50072 * 248.74184 * 26 14 2 28 28 C 1.53008 * 117.49485 * 180.08636 * 26 14 2 29 29 H 1.08999 * 109.47333 * 89.99805 * 1 2 3 30 30 H 1.08997 * 109.47024 * 210.00620 * 1 2 3 31 31 H 1.09000 * 109.46875 * 330.00379 * 1 2 3 32 32 H 1.09002 * 109.47152 * 60.00245 * 5 3 2 33 33 H 1.09001 * 109.46980 * 300.00345 * 5 3 2 34 34 H 1.09001 * 109.47194 * 299.99742 * 6 5 3 35 35 H 1.08992 * 109.47399 * 59.99914 * 6 5 3 36 36 H 1.07991 * 120.75976 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.43855 * 179.97438 * 9 8 7 38 38 H 0.96702 * 114.00000 * 89.99865 * 11 10 9 39 39 H 1.08006 * 119.57851 * 180.31029 * 13 12 10 40 40 H 1.09004 * 109.47057 * 65.00020 * 16 14 2 41 41 H 1.08999 * 109.47072 * 184.99743 * 16 14 2 42 42 H 0.96998 * 120.00424 * 359.97438 * 17 16 14 43 43 H 0.96996 * 119.99801 * 180.02562 * 21 20 18 44 44 H 1.08999 * 115.55304 * 34.42086 * 26 14 2 45 45 H 1.09006 * 117.49413 * 0.02562 * 27 26 14 46 46 H 1.08994 * 117.50143 * 145.02275 * 27 26 14 47 47 H 1.09008 * 117.49504 * 214.97878 * 28 26 14 48 48 H 1.09000 * 117.50091 * 359.97328 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 6 1.6262 4.9404 -0.0023 8 6 1.2749 5.5488 1.1952 9 6 0.5838 6.7468 1.1488 10 6 0.2664 7.2966 -0.0868 11 8 -0.4114 8.4705 -0.1456 12 7 0.6176 6.6862 -1.2061 13 6 1.2818 5.5460 -1.1940 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0695 0.0009 16 6 1.8279 -2.0705 1.2502 17 7 2.0706 -1.2553 2.4429 18 6 1.8112 -1.7670 3.6863 19 1 1.4273 -2.7713 3.7876 20 6 2.0418 -0.9947 4.8165 21 7 2.5092 0.2295 4.6931 22 14 1.6872 -1.6924 6.5127 23 1 2.9016 -2.3710 7.0325 24 1 1.3045 -0.5902 7.4313 25 1 0.5738 -2.6709 6.4226 26 6 1.8278 -2.0715 -1.2483 27 6 1.0115 -3.3503 -1.0502 28 6 2.4913 -3.4380 -1.4317 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7584 2.5303 0.8892 33 1 0.7590 2.5298 -0.8908 34 1 3.0063 3.5779 0.8889 35 1 3.0063 3.5771 -0.8910 36 1 1.5357 5.0978 2.1411 37 1 0.2944 7.2472 2.0612 38 1 0.1572 9.2525 -0.1627 39 1 1.5562 5.0789 -2.1284 40 1 0.7741 -2.3459 1.2066 41 1 2.4376 -2.9728 1.2964 42 1 2.4158 -0.3534 2.3520 43 1 2.6706 0.7689 5.4829 44 1 1.6317 -1.4829 -2.1446 45 1 0.7374 -3.6194 -0.0301 46 1 0.2785 -3.6032 -1.8162 47 1 2.7312 -3.7485 -2.4487 48 1 3.1914 -3.7648 -0.6629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734304759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:37 Heat of formation + Delta-G solvation = -24.137198 kcal Electronic energy + Delta-G solvation = -28695.427916 eV Core-core repulsion = 24751.072088 eV Total energy + Delta-G solvation = -3944.355828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55504 -41.10896 -39.08754 -38.19522 -36.39099 -35.71942 -35.09758 -33.21898 -32.95669 -30.74597 -29.39504 -27.66081 -26.43245 -25.34373 -24.69333 -24.02734 -23.10517 -22.68655 -20.91692 -19.84278 -19.78245 -19.04091 -18.22343 -17.94029 -17.54462 -16.97964 -16.73062 -16.61715 -16.16443 -15.79315 -15.55143 -15.21833 -15.08847 -14.76658 -14.71986 -14.28233 -14.21203 -14.12736 -13.74400 -13.56645 -13.31792 -13.06024 -12.92512 -12.88428 -12.78346 -12.72300 -12.55697 -12.31545 -12.23652 -12.02069 -11.95886 -11.75803 -11.34583 -10.97932 -10.94740 -10.85028 -10.61306 -10.41242 -9.73613 -9.51331 -8.99221 -7.93470 -5.23031 -0.02291 0.22796 1.45778 1.47677 1.55714 1.73001 2.08140 2.53952 2.54907 2.82799 2.96109 3.39283 3.50303 3.70914 3.74248 3.91454 3.91896 3.98145 4.02714 4.10998 4.16606 4.21961 4.24856 4.28803 4.37735 4.43491 4.49723 4.61802 4.67222 4.72506 4.79791 4.84883 4.88433 4.95596 5.02808 5.04517 5.08088 5.16875 5.17054 5.25915 5.34239 5.36629 5.47849 5.58290 5.68948 6.26563 6.52491 6.63367 6.92418 7.28410 7.33610 8.08669 8.32859 9.29379 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.003309 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.344921 B = 8459.444627 C =10867.171950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.596 5.596 3 C 0.507 3.493 4 O -0.587 6.587 5 C -0.121 4.121 6 C -0.052 4.052 7 C -0.136 4.136 8 C -0.062 4.062 9 C -0.181 4.181 10 C 0.292 3.708 11 O -0.493 6.493 12 N -0.527 5.527 13 C 0.125 3.875 14 C 0.168 3.832 15 H 0.067 0.933 16 C 0.145 3.855 17 N -0.740 5.740 18 C -0.245 4.245 19 H 0.075 0.925 20 C -0.071 4.071 21 N -0.965 5.965 22 Si 0.971 3.029 23 H -0.291 1.291 24 H -0.295 1.295 25 H -0.267 1.267 26 C -0.161 4.161 27 C -0.169 4.169 28 C -0.172 4.172 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.419 0.581 39 H 0.181 0.819 40 H 0.041 0.959 41 H 0.022 0.978 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.117 0.883 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 7.425 -14.859 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.327 5.327 3 C 0.297 3.703 4 O -0.468 6.468 5 C -0.160 4.160 6 C -0.090 4.090 7 C -0.138 4.138 8 C -0.087 4.087 9 C -0.201 4.201 10 C 0.113 3.887 11 O -0.304 6.304 12 N -0.245 5.245 13 C -0.031 4.031 14 C 0.064 3.936 15 H 0.085 0.915 16 C 0.018 3.982 17 N -0.382 5.382 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.801 3.199 23 H -0.219 1.219 24 H -0.221 1.221 25 H -0.192 1.192 26 C -0.180 4.180 27 C -0.206 4.206 28 C -0.210 4.210 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.280 0.720 39 H 0.198 0.802 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.135 0.865 45 H 0.110 0.890 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.684 7.382 -15.500 18.423 hybrid contribution 0.871 0.000 2.176 2.344 sum -5.813 7.382 -13.324 16.304 Atomic orbital electron populations 1.21879 0.77817 1.03642 1.02801 1.47740 1.08055 1.04893 1.72050 1.21221 0.87732 0.86618 0.74715 1.90662 1.16029 1.87965 1.52124 1.21633 0.98955 0.89720 1.05716 1.20119 0.96076 0.88664 1.04152 1.20856 1.00793 0.97879 0.94318 1.21731 0.94066 0.93719 0.99219 1.22281 1.00675 0.98117 0.99070 1.19374 0.91802 0.89216 0.88275 1.84730 1.35505 1.14268 1.95852 1.67202 1.12918 1.11783 1.32638 1.22730 0.92311 0.89533 0.98563 1.20543 0.96228 0.83376 0.93462 0.91512 1.21256 0.98168 0.93116 0.85669 1.42491 1.78685 1.15685 1.01378 1.19596 1.35062 0.98121 0.84856 0.90681 1.25531 1.02732 0.96757 1.01382 1.69849 1.52782 1.10053 1.28879 0.85177 0.77787 0.77009 0.79976 1.21867 1.22149 1.19219 1.22409 1.07232 0.90345 0.98036 1.23198 0.94390 0.99608 1.03380 1.23041 0.96137 0.98413 1.03372 0.89747 0.91569 0.90717 0.88734 0.85938 0.91931 0.89424 0.83732 0.82382 0.72050 0.80239 0.94154 0.95982 0.79595 0.94156 0.86480 0.89028 0.86570 0.86672 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.95 9.61 127.77 1.23 3.17 16 2 N -0.60 -18.74 2.24 -822.60 -1.85 -20.58 16 3 C 0.51 17.24 7.38 87.66 0.65 17.88 16 4 O -0.59 -25.02 15.31 -3.02 -0.05 -25.06 16 5 C -0.12 -3.00 4.23 29.85 0.13 -2.87 16 6 C -0.05 -1.26 4.66 29.85 0.14 -1.12 16 7 C -0.14 -2.94 5.15 -19.77 -0.10 -3.05 16 8 C -0.06 -1.33 9.85 22.45 0.22 -1.10 16 9 C -0.18 -3.57 10.04 22.47 0.23 -3.34 16 10 C 0.29 6.36 7.74 84.79 0.66 7.02 16 11 O -0.49 -9.06 13.56 -89.97 -1.22 -10.28 16 12 N -0.53 -12.50 10.39 -308.96 -3.21 -15.71 16 13 C 0.13 2.58 10.85 84.62 0.92 3.50 16 14 C 0.17 5.72 2.59 44.99 0.12 5.83 16 15 H 0.07 2.76 6.90 -2.39 -0.02 2.75 16 16 C 0.14 5.74 4.14 86.38 0.36 6.10 16 17 N -0.74 -38.09 5.43 -343.45 -1.87 -39.96 16 18 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 19 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 21 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 22 Si 0.97 46.10 29.55 68.60 2.03 48.12 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C -0.16 -3.98 5.48 -10.79 -0.06 -4.04 16 27 C -0.17 -3.58 9.59 30.62 0.29 -3.28 16 28 C -0.17 -3.82 9.94 30.62 0.30 -3.52 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.75 6.53 -2.39 -0.02 1.74 16 31 H 0.07 1.70 6.44 -2.39 -0.02 1.69 16 32 H 0.09 2.43 7.40 -2.39 -0.02 2.42 16 33 H 0.12 2.20 8.11 -2.39 -0.02 2.18 16 34 H 0.06 1.86 8.05 -2.39 -0.02 1.85 16 35 H 0.09 2.05 8.05 -2.39 -0.02 2.03 16 36 H 0.14 3.04 8.06 -2.92 -0.02 3.02 16 37 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.42 3.30 9.06 -74.06 -0.67 2.63 16 39 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.04 1.51 5.34 -2.38 -0.01 1.50 16 41 H 0.02 0.91 7.44 -2.39 -0.02 0.89 16 42 H 0.37 21.08 7.06 -92.71 -0.65 20.43 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.09 2.23 5.80 -2.38 -0.01 2.22 16 46 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.08 2.09 7.66 -2.39 -0.02 2.08 16 Total: -1.00 -77.12 394.33 0.17 -76.96 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -0.33 Total: 40.95 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 6.38 Total: 4.70 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -6.64 Total: -135.38 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.27 Total: -35.35 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.12 0.17 -76.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734304759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.819 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds