Wall clock time and date at job start Tue Mar 31 2020 17:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00153 * 2 1 4 4 C 1.52997 * 109.47272 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46991 * 65.00381 * 4 3 2 6 6 C 1.36944 * 119.99604 * 89.99938 * 5 4 3 7 7 H 1.07994 * 120.00183 * 29.93159 * 6 5 4 8 8 C 1.38807 * 119.99479 * 209.92402 * 6 5 4 9 9 N 1.31618 * 120.00405 * 40.60439 * 8 6 5 10 10 Si 1.86800 * 120.00118 * 220.59958 * 8 6 5 11 11 H 1.48503 * 109.47227 * 270.00504 * 10 8 6 12 12 H 1.48507 * 109.46986 * 30.00138 * 10 8 6 13 13 H 1.48494 * 109.47536 * 150.00373 * 10 8 6 14 14 C 1.46495 * 120.00146 * 270.00169 * 5 4 3 15 15 C 1.53005 * 109.46954 * 265.72408 * 14 5 4 16 16 N 1.46495 * 109.46954 * 179.97438 * 15 14 5 17 17 C 1.34778 * 119.99795 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00037 * 179.97438 * 17 16 15 20 20 H 1.09001 * 110.72415 * 303.41025 * 19 17 16 21 21 C 1.54367 * 110.82353 * 180.02562 * 19 17 16 22 22 C 1.51222 * 105.11936 * 268.06188 * 21 19 17 23 23 C 1.38745 * 130.69516 * 162.91883 * 22 21 19 24 24 C 1.38574 * 118.55784 * 180.02562 * 23 22 21 25 25 C 1.38236 * 118.99023 * 359.89141 * 24 23 22 26 26 N 1.31684 * 120.79874 * 0.06736 * 25 24 23 27 27 C 1.32295 * 122.03448 * 359.97357 * 26 25 24 28 28 C 1.51476 * 130.14129 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46707 * 299.99105 * 1 2 3 31 31 H 1.08996 * 109.47382 * 59.99300 * 1 2 3 32 32 H 1.09003 * 109.46630 * 60.00849 * 3 2 1 33 33 H 1.09002 * 109.47374 * 300.01104 * 3 2 1 34 34 H 1.09004 * 109.47194 * 305.00655 * 4 3 2 35 35 H 1.09001 * 109.47192 * 185.00622 * 4 3 2 36 36 H 0.97006 * 119.99837 * 5.82067 * 9 8 6 37 37 H 1.09000 * 109.47073 * 25.71501 * 14 5 4 38 38 H 1.08996 * 109.47218 * 145.72026 * 14 5 4 39 39 H 1.09001 * 109.47000 * 299.99533 * 15 14 5 40 40 H 1.08996 * 109.47470 * 59.99772 * 15 14 5 41 41 H 0.96996 * 120.00639 * 359.97438 * 16 15 14 42 42 H 1.09000 * 110.30998 * 26.96968 * 21 19 17 43 43 H 1.08999 * 110.31012 * 149.04656 * 21 19 17 44 44 H 1.07998 * 120.72210 * 359.97438 * 23 22 21 45 45 H 1.07999 * 120.50704 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.60005 * 180.02562 * 25 24 23 47 47 H 1.09008 * 110.28987 * 78.26676 * 28 27 26 48 48 H 1.08993 * 110.29902 * 316.13488 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2660 1.3463 -2.3390 7 1 4.6424 2.3486 -2.1977 8 6 4.0767 0.8503 -3.6215 9 7 3.0123 0.1266 -3.8969 10 14 5.3324 1.2100 -4.9569 11 1 4.9647 2.4672 -5.6565 12 1 6.6771 1.3594 -4.3445 13 1 5.3539 0.0894 -5.9310 14 6 4.1051 -0.8920 -1.3430 15 6 5.5502 -1.2951 -1.0427 16 7 5.6796 -2.7515 -1.1322 17 6 6.8721 -3.3373 -0.9057 18 8 7.8379 -2.6587 -0.6273 19 6 7.0051 -4.8357 -0.9973 20 1 6.3040 -5.3271 -0.3226 21 6 8.4539 -5.2773 -0.6994 22 6 9.1378 -5.3216 -2.0474 23 6 10.4852 -5.3424 -2.3780 24 6 10.8380 -5.3832 -3.7174 25 6 9.8393 -5.4040 -4.6730 26 7 8.5702 -5.3841 -4.3224 27 6 8.1928 -5.3444 -3.0551 28 6 6.8044 -5.3167 -2.4500 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8462 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8515 0.5681 0.8409 35 1 3.9785 2.1765 0.0890 36 1 2.3189 0.0102 -3.2286 37 1 3.4391 -1.3615 -0.6190 38 1 3.8380 -1.2190 -2.3478 39 1 6.2163 -0.8256 -1.7666 40 1 5.8173 -0.9681 -0.0378 41 1 4.9071 -3.2944 -1.3546 42 1 8.9444 -4.5522 -0.0499 43 1 8.4611 -6.2643 -0.2370 44 1 11.2425 -5.3263 -1.6082 45 1 11.8774 -5.3999 -4.0103 46 1 10.1032 -5.4362 -5.7198 47 1 6.3676 -6.3154 -2.4603 48 1 6.1682 -4.6194 -2.9950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734577994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:14 Heat of formation + Delta-G solvation = -26.769724 kcal Electronic energy + Delta-G solvation = -28896.740329 eV Core-core repulsion = 24952.270346 eV Total energy + Delta-G solvation = -3944.469983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99515 -39.20526 -37.52837 -36.18595 -35.66296 -34.07175 -32.67548 -31.60013 -30.14338 -29.11028 -27.90939 -27.26156 -25.68833 -24.47237 -23.42213 -22.25824 -21.92275 -21.51546 -20.24506 -19.58036 -17.53398 -16.97127 -16.74129 -16.17926 -15.84688 -15.70538 -15.35021 -15.12025 -14.87199 -14.54903 -14.48501 -13.88030 -13.83016 -13.56100 -13.47696 -13.41237 -12.95868 -12.86563 -12.67038 -12.24062 -12.09134 -11.87325 -11.65458 -11.55313 -11.38207 -11.24462 -10.99299 -10.83915 -10.67663 -10.45573 -10.12022 -10.01811 -9.77568 -9.63982 -9.52330 -9.31146 -9.06804 -8.76142 -8.52362 -8.23675 -6.92136 -6.17336 -3.23380 1.05162 1.25340 2.89967 3.46121 3.53149 3.60566 3.71084 3.74466 3.88899 4.33650 4.40212 4.54645 4.60953 4.79414 4.81380 4.89263 5.09198 5.17207 5.19601 5.29995 5.40852 5.42646 5.55283 5.58873 5.69511 5.70969 5.71096 5.81779 5.90348 5.94296 5.99521 6.04782 6.05992 6.08036 6.12032 6.18895 6.26268 6.47694 6.54973 6.65161 6.70648 6.87079 6.97433 7.26104 7.76297 7.90535 7.97187 8.10175 8.53752 8.58146 9.07846 9.81116 10.27751 11.05925 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.003245 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.696171 B = 8626.556197 C = 9879.401475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.042 3.958 4 C 0.149 3.851 5 N -0.578 5.578 6 C -0.378 4.378 7 H 0.054 0.946 8 C -0.002 4.002 9 N -0.878 5.878 10 Si 1.037 2.963 11 H -0.294 1.294 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.138 3.862 15 C 0.102 3.898 16 N -0.718 5.718 17 C 0.514 3.486 18 O -0.542 6.542 19 C -0.112 4.112 20 H 0.116 0.884 21 C -0.065 4.065 22 C -0.137 4.137 23 C -0.064 4.064 24 C -0.175 4.175 25 C 0.099 3.901 26 N -0.477 5.477 27 C 0.119 3.881 28 C -0.063 4.063 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.273 0.727 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.397 0.603 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.156 0.844 47 H 0.100 0.900 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -12.897 6.594 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.037 4.037 4 C 0.022 3.978 5 N -0.298 5.298 6 C -0.506 4.506 7 H 0.072 0.928 8 C -0.208 4.208 9 N -0.514 5.514 10 Si 0.866 3.134 11 H -0.221 1.221 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.011 3.989 15 C -0.023 4.023 16 N -0.368 5.368 17 C 0.299 3.701 18 O -0.419 6.419 19 C -0.134 4.134 20 H 0.134 0.866 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.090 4.090 24 C -0.195 4.195 25 C -0.058 4.058 26 N -0.185 5.185 27 C -0.019 4.019 28 C -0.101 4.101 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.231 0.769 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.174 0.826 47 H 0.119 0.881 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.609 -12.835 4.547 15.136 hybrid contribution -0.311 0.559 1.954 2.056 sum 6.298 -12.276 6.501 15.252 Atomic orbital electron populations 1.22609 0.82900 1.01650 0.99068 1.87896 1.18082 1.28747 1.95171 1.23438 0.97978 0.83953 0.98343 1.21030 0.89347 0.97695 0.89763 1.43687 1.75960 1.01110 1.09063 1.19698 1.44347 1.00667 0.85841 0.92841 1.25574 0.98598 0.99388 0.97287 1.70759 1.04589 1.40801 1.35242 0.84006 0.76909 0.76236 0.76238 1.22123 1.21664 1.21100 1.20953 0.90919 0.85185 1.01859 1.22237 1.02084 0.77064 1.00913 1.46061 1.10784 1.09602 1.70384 1.20252 0.83262 0.89501 0.77087 1.90674 1.37844 1.65209 1.48198 1.22056 0.99296 0.93985 0.98045 0.86587 1.20864 0.92831 1.02354 0.94226 1.21404 0.94264 1.00530 0.97685 1.21033 0.94984 0.96421 0.96551 1.22050 1.01046 1.02816 0.93619 1.22617 0.87257 0.95928 1.00020 1.66830 1.19954 1.12035 1.19716 1.21766 0.96470 0.95199 0.88464 1.20961 0.92861 1.03457 0.92796 0.90567 0.95284 0.94536 0.95556 0.93239 0.93778 0.92017 0.91649 0.93579 0.90887 0.91502 0.93008 0.76910 0.88467 0.89298 0.85066 0.84667 0.82646 0.88145 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.38 -7.34 9.61 -35.23 -0.34 -7.68 16 3 C 0.04 0.80 6.28 37.16 0.23 1.04 16 4 C 0.15 3.04 6.05 -4.04 -0.02 3.02 16 5 N -0.58 -13.83 2.32 -173.24 -0.40 -14.23 16 6 C -0.38 -10.22 9.26 -15.06 -0.14 -10.36 16 7 H 0.05 1.49 8.06 -52.49 -0.42 1.07 16 8 C 0.00 -0.06 4.51 -17.43 -0.08 -0.13 16 9 N -0.88 -25.21 12.22 55.49 0.68 -24.53 16 10 Si 1.04 25.48 30.05 -169.99 -5.11 20.37 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.14 3.06 5.08 -4.04 -0.02 3.04 16 15 C 0.10 2.11 5.98 -4.04 -0.02 2.09 16 16 N -0.72 -11.98 5.44 -60.29 -0.33 -12.31 16 17 C 0.51 8.47 7.08 -10.98 -0.08 8.39 16 18 O -0.54 -11.12 15.53 5.56 0.09 -11.04 16 19 C -0.11 -1.30 3.47 -90.35 -0.31 -1.61 16 20 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.07 -0.73 6.08 -26.91 -0.16 -0.89 16 22 C -0.14 -1.79 6.16 -104.20 -0.64 -2.44 16 23 C -0.06 -0.75 10.17 -39.27 -0.40 -1.14 16 24 C -0.18 -1.90 10.12 -39.46 -0.40 -2.30 16 25 C 0.10 1.23 11.18 -17.62 -0.20 1.04 16 26 N -0.48 -7.30 10.35 -9.19 -0.10 -7.40 16 27 C 0.12 1.71 7.32 -82.04 -0.60 1.11 16 28 C -0.06 -0.75 6.30 -26.80 -0.17 -0.92 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 36 H 0.27 7.96 8.12 -40.82 -0.33 7.62 16 37 H 0.05 0.96 7.20 -51.93 -0.37 0.59 16 38 H 0.07 1.82 5.71 -51.93 -0.30 1.52 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.40 5.54 8.47 -40.82 -0.35 5.20 16 42 H 0.10 1.24 7.03 -51.93 -0.37 0.87 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 48 H 0.09 1.25 7.81 -51.93 -0.41 0.85 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -34.29 396.98 -9.10 -43.39 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.67 Total: 5.87 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.90 Total: 1.57 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.15 Total: -58.47 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.25 Total: -18.71 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.11 Total: 20.37 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.29 -9.10 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734577994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.619 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds