Wall clock time and date at job start Tue Mar 31 2020 17:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35651 * 116.99763 * 2 1 4 4 C 1.39346 * 120.54086 * 0.02690 * 3 2 1 5 5 C 1.38303 * 118.43832 * 179.97438 * 4 3 2 6 6 C 1.38771 * 119.44401 * 359.97438 * 5 4 3 7 7 N 1.31370 * 121.06567 * 359.72155 * 6 5 4 8 8 C 1.32861 * 121.70029 * 0.56785 * 7 6 5 9 9 C 1.47829 * 119.78492 * 179.70902 * 8 7 6 10 10 O 1.21552 * 119.99954 * 179.72989 * 9 8 7 11 11 N 1.34770 * 119.99905 * 359.72990 * 9 8 7 12 12 C 1.46501 * 119.99812 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47234 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47344 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47295 * 177.30605 * 14 13 12 16 16 H 1.09001 * 109.87638 * 306.76683 * 15 14 13 17 17 C 1.54327 * 109.88354 * 185.75467 * 15 14 13 18 18 C 1.55158 * 102.94281 * 218.39038 * 17 15 14 19 19 C 1.54907 * 101.57945 * 35.49906 * 18 17 15 20 20 N 1.47018 * 109.88554 * 67.78617 * 15 14 13 21 21 C 1.36941 * 125.64446 * 298.31634 * 20 15 14 22 22 H 1.07991 * 120.00215 * 343.49341 * 21 20 15 23 23 C 1.38814 * 119.99781 * 163.49310 * 21 20 15 24 24 N 1.31619 * 120.00105 * 161.45108 * 23 21 20 25 25 Si 1.86807 * 120.00154 * 341.44994 * 23 21 20 26 26 H 1.48502 * 109.46768 * 84.79666 * 25 23 21 27 27 H 1.48490 * 109.47083 * 204.79832 * 25 23 21 28 28 H 1.48499 * 109.46741 * 324.79940 * 25 23 21 29 29 H 1.09006 * 109.47273 * 59.99850 * 1 2 3 30 30 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47262 * 299.99488 * 1 2 3 32 32 H 1.07995 * 120.77976 * 359.95361 * 4 3 2 33 33 H 1.08002 * 120.27420 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.46036 * 180.02562 * 6 5 4 35 35 H 0.96998 * 120.00540 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47222 * 60.00065 * 12 11 9 37 37 H 1.08998 * 109.47521 * 299.99987 * 12 11 9 38 38 H 1.08992 * 109.47020 * 300.00008 * 13 12 11 39 39 H 1.09004 * 109.47064 * 60.00144 * 13 12 11 40 40 H 1.09006 * 109.47116 * 297.30637 * 14 13 12 41 41 H 1.09008 * 109.46980 * 57.30241 * 14 13 12 42 42 H 1.09000 * 110.71865 * 336.75374 * 17 15 14 43 43 H 1.08996 * 110.72085 * 100.02512 * 17 15 14 44 44 H 1.08998 * 111.00264 * 153.58097 * 18 17 15 45 45 H 1.09002 * 110.99736 * 277.39125 * 18 17 15 46 46 H 1.08996 * 110.36557 * 81.83819 * 19 18 17 47 47 H 1.09002 * 110.36491 * 204.15025 * 19 18 17 48 48 H 0.97001 * 120.00252 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2968 2.3844 0.0006 5 6 1.9695 3.5929 0.0011 6 6 3.3571 3.6012 0.0016 7 7 4.0418 2.4800 0.0070 8 6 3.4409 1.2950 0.0011 9 6 4.2531 0.0599 0.0011 10 8 3.7075 -1.0263 0.0006 11 7 5.5985 0.1381 0.0016 12 6 6.4034 -1.0860 0.0010 13 6 7.8890 -0.7197 0.0011 14 6 8.7296 -1.9980 0.0012 15 6 10.2137 -1.6326 -0.0665 16 1 10.3939 -0.9696 -0.9128 17 6 11.0633 -2.9126 -0.2125 18 6 12.3004 -2.6115 0.6743 19 6 11.6648 -1.7973 1.8287 20 7 10.6236 -0.9727 1.1817 21 6 10.1229 0.2079 1.6619 22 1 9.5705 0.8661 1.0078 23 6 10.3253 0.5587 2.9897 24 7 10.1822 1.8109 3.3688 25 14 10.8009 -0.7467 4.2386 26 1 12.2722 -0.9457 4.2106 27 1 10.3864 -0.3079 5.5953 28 1 10.1220 -2.0239 3.9024 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 0.2174 2.3527 0.0003 33 1 1.4193 4.5222 0.0011 34 1 3.8827 4.5447 0.0024 35 1 6.0340 1.0048 0.0023 36 1 6.1740 -1.6713 -0.8894 37 1 6.1734 -1.6726 0.8905 38 1 8.1186 -0.1334 -0.8885 39 1 8.1187 -0.1342 0.8914 40 1 8.5352 -2.5607 0.9143 41 1 8.4653 -2.6066 -0.8637 42 1 10.5212 -3.7802 0.1636 43 1 11.3601 -3.0622 -1.2505 44 1 12.7481 -3.5331 1.0463 45 1 13.0337 -2.0146 0.1319 46 1 11.2181 -2.4667 2.5638 47 1 12.4130 -1.1600 2.3001 48 1 10.3241 2.0561 4.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753037589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:58 Heat of formation + Delta-G solvation = -33.764851 kcal Electronic energy + Delta-G solvation = -28571.147338 eV Core-core repulsion = 24626.374023 eV Total energy + Delta-G solvation = -3944.773315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96019 -40.22283 -39.66926 -39.18621 -36.57727 -34.57097 -34.06211 -33.19399 -31.88383 -31.71330 -29.92250 -28.34546 -26.73330 -26.12699 -24.92150 -23.84515 -23.12331 -21.94831 -21.70061 -20.74456 -19.40190 -18.80959 -18.63547 -18.12582 -17.47889 -17.06794 -16.94509 -16.65980 -16.39612 -16.19001 -15.48568 -15.32286 -15.04008 -14.96019 -14.87351 -14.51133 -14.40011 -14.29947 -13.80827 -13.62500 -13.46532 -13.41501 -13.10584 -12.72385 -12.59802 -12.46855 -12.42408 -12.40980 -12.07268 -11.83046 -11.55562 -11.47419 -11.35152 -11.21068 -11.04526 -10.86049 -10.71267 -10.61723 -10.12656 -9.51871 -8.94716 -8.06838 -5.30727 -0.38670 0.20558 1.29629 1.39196 1.45179 1.72092 2.09707 2.20452 2.46436 2.80545 3.16718 3.20215 3.37552 3.57345 3.74043 3.86201 3.97234 3.98497 4.11692 4.16559 4.20563 4.26740 4.28558 4.34626 4.45661 4.46069 4.52885 4.67877 4.69185 4.76602 4.82073 4.84461 4.89708 4.96825 4.98518 5.03142 5.17388 5.20759 5.27638 5.40027 5.40292 5.43237 5.61482 5.64865 5.82837 6.19369 6.21111 6.43181 6.80285 6.86785 7.16362 7.65747 8.23292 9.12552 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002735 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.284306 B =10235.937008 C =11143.794686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.124 3.876 4 C -0.169 4.169 5 C -0.085 4.085 6 C 0.050 3.950 7 N -0.447 5.447 8 C 0.000 4.000 9 C 0.561 3.439 10 O -0.560 6.560 11 N -0.708 5.708 12 C 0.131 3.869 13 C -0.129 4.129 14 C -0.110 4.110 15 C 0.150 3.850 16 H 0.042 0.958 17 C -0.116 4.116 18 C -0.120 4.120 19 C 0.089 3.911 20 N -0.622 5.622 21 C -0.201 4.201 22 H 0.079 0.921 23 C -0.046 4.046 24 N -0.962 5.962 25 Si 0.939 3.061 26 H -0.278 1.278 27 H -0.320 1.320 28 H -0.269 1.269 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.191 0.809 34 H 0.192 0.808 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.022 0.978 47 H 0.035 0.965 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 -0.790 -11.035 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C 0.073 3.927 4 C -0.195 4.195 5 C -0.105 4.105 6 C -0.112 4.112 7 N -0.159 5.159 8 C -0.136 4.136 9 C 0.348 3.652 10 O -0.439 6.439 11 N -0.358 5.358 12 C 0.008 3.992 13 C -0.167 4.167 14 C -0.150 4.150 15 C 0.045 3.955 16 H 0.060 0.940 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.035 4.035 20 N -0.348 5.348 21 C -0.330 4.330 22 H 0.097 0.903 23 C -0.239 4.239 24 N -0.611 5.611 25 Si 0.771 3.229 26 H -0.204 1.204 27 H -0.250 1.250 28 H -0.195 1.195 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.201 0.799 33 H 0.209 0.791 34 H 0.209 0.791 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.039 0.961 47 H 0.053 0.947 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.199 -1.689 -10.898 20.431 hybrid contribution -0.580 0.312 1.358 1.510 sum -17.779 -1.377 -9.539 20.223 Atomic orbital electron populations 1.23538 0.76053 1.05906 1.03058 1.86380 1.23681 1.25434 1.86468 1.20260 0.91902 0.87064 0.93490 1.22193 1.02680 0.90544 1.04125 1.22746 0.94924 0.99913 0.92871 1.23401 0.92977 0.96237 0.98610 1.67560 1.41313 0.98010 1.08986 1.20457 0.89545 0.92473 1.11159 1.18126 0.82496 0.88043 0.76565 1.90752 1.72410 1.29077 1.51653 1.45935 1.05595 1.11126 1.73189 1.21358 0.90678 0.86091 1.01101 1.21930 0.91732 0.99749 1.03300 1.21827 0.95672 0.96166 1.01294 1.21276 0.92911 0.93314 0.88022 0.94021 1.22619 0.95363 0.96280 1.01136 1.22678 0.97527 0.99796 0.95824 1.22228 0.91104 0.93596 0.96586 1.45150 1.42692 1.22969 1.23988 1.18678 1.28196 0.92862 0.93229 0.90327 1.25463 1.02326 0.97327 0.98755 1.69909 1.57140 1.17010 1.17050 0.86150 0.78060 0.80445 0.78290 1.20438 1.25007 1.19509 0.90320 0.87000 0.90681 0.79923 0.79140 0.79114 0.75140 0.91103 0.93460 0.91723 0.91097 0.93714 0.89780 0.90452 0.88344 0.88912 0.90786 0.96052 0.94668 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.83 113.37 1.11 1.23 16 2 O -0.31 -8.32 8.56 -68.67 -0.59 -8.90 16 3 C 0.12 3.21 6.71 22.94 0.15 3.36 16 4 C -0.17 -2.60 9.13 22.55 0.21 -2.39 16 5 C -0.09 -1.07 10.10 22.41 0.23 -0.85 16 6 C 0.05 0.96 11.17 84.89 0.95 1.91 16 7 N -0.45 -12.85 9.54 -184.63 -1.76 -14.62 16 8 C 0.00 0.00 6.76 41.93 0.28 0.28 16 9 C 0.56 21.23 7.80 86.78 0.68 21.90 16 10 O -0.56 -23.82 15.14 17.11 0.26 -23.56 16 11 N -0.71 -25.73 5.54 -465.99 -2.58 -28.32 16 12 C 0.13 4.65 5.67 86.38 0.49 5.14 16 13 C -0.13 -4.78 4.64 30.60 0.14 -4.64 16 14 C -0.11 -3.74 4.72 30.59 0.14 -3.60 16 15 C 0.15 5.45 3.22 45.34 0.15 5.60 16 16 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 17 C -0.12 -3.23 6.48 31.78 0.21 -3.02 16 18 C -0.12 -3.64 7.09 31.99 0.23 -3.42 16 19 C 0.09 3.78 4.67 86.79 0.41 4.19 16 20 N -0.62 -28.91 2.99 -667.48 -1.99 -30.90 16 21 C -0.20 -11.17 8.39 84.03 0.70 -10.46 16 22 H 0.08 4.63 6.63 -2.92 -0.02 4.61 16 23 C -0.05 -2.72 5.47 84.86 0.46 -2.25 16 24 N -0.96 -61.42 13.97 21.65 0.30 -61.12 16 25 Si 0.94 48.78 24.24 68.60 1.66 50.45 16 26 H -0.28 -13.73 6.43 99.48 0.64 -13.09 16 27 H -0.32 -17.17 7.11 99.48 0.71 -16.47 16 28 H -0.27 -13.54 6.21 99.48 0.62 -12.93 16 29 H 0.08 0.68 7.70 -2.38 -0.02 0.66 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 0.71 7.70 -2.39 -0.02 0.69 16 32 H 0.18 1.30 6.46 -2.91 -0.02 1.28 16 33 H 0.19 0.58 8.06 -2.91 -0.02 0.55 16 34 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.41 14.74 7.80 -92.71 -0.72 14.01 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 3.26 4.92 -2.38 -0.01 3.25 16 40 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.08 1.99 7.85 -2.39 -0.02 1.97 16 43 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 44 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.02 0.96 5.44 -2.39 -0.01 0.94 16 47 H 0.04 1.63 6.13 -2.39 -0.01 1.62 16 48 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -81.73 378.04 1.93 -79.79 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.10 Total: 24.20 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 6.54 Total: 12.98 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -6.04 Total: -134.96 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.33 Total: -32.47 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 1.66 Total: 50.45 kcal Total: -81.73 1.93 -79.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753037589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.030 kcal (2) G-P(sol) polarization free energy of solvation -81.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds