Wall clock time and date at job start Tue Mar 31 2020 17:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35431 * 117.00008 * 2 1 4 4 N 1.32240 * 119.79923 * 0.02562 * 3 2 1 5 5 C 1.31873 * 121.79671 * 180.02562 * 4 3 2 6 6 C 1.38359 * 121.18996 * 359.97438 * 5 4 3 7 7 C 1.38330 * 119.45526 * 0.25984 * 6 5 4 8 8 C 1.39987 * 118.35177 * 359.50597 * 7 6 5 9 9 C 1.47521 * 120.60289 * 180.21555 * 8 7 6 10 10 O 1.21587 * 120.00715 * 180.26855 * 9 8 7 11 11 N 1.34779 * 119.99834 * 0.27760 * 9 8 7 12 12 C 1.46500 * 119.99964 * 179.97438 * 11 9 8 13 13 C 1.53009 * 109.47025 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47006 * 180.02562 * 13 12 11 15 15 C 1.53040 * 109.45669 * 295.02392 * 14 13 12 16 16 C 1.53201 * 109.30740 * 178.60186 * 15 14 13 17 17 N 1.46930 * 108.76410 * 54.66071 * 16 15 14 18 18 C 1.36930 * 120.62923 * 126.40277 * 17 16 15 19 19 H 1.07998 * 120.00617 * 331.82493 * 18 17 16 20 20 C 1.38813 * 119.99754 * 151.82129 * 18 17 16 21 21 N 1.31616 * 120.00321 * 343.07425 * 20 18 17 22 22 Si 1.86808 * 119.99827 * 163.07242 * 20 18 17 23 23 H 1.48495 * 109.47062 * 90.00170 * 22 20 18 24 24 H 1.48499 * 109.46940 * 210.00354 * 22 20 18 25 25 H 1.48502 * 109.46997 * 330.00074 * 22 20 18 26 26 C 1.46921 * 118.73481 * 306.37764 * 17 16 15 27 27 C 1.53041 * 109.45881 * 174.97366 * 14 13 12 28 28 H 1.09005 * 109.47102 * 59.99454 * 1 2 3 29 29 H 1.08991 * 109.47300 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46964 * 300.00426 * 1 2 3 31 31 H 1.08007 * 119.40507 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.27286 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.82637 * 179.74479 * 7 6 5 34 34 H 0.96997 * 120.00185 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.47681 * 299.99902 * 12 11 9 36 36 H 1.09006 * 109.47142 * 60.00413 * 12 11 9 37 37 H 1.09005 * 109.46686 * 300.00073 * 13 12 11 38 38 H 1.08997 * 109.46911 * 60.00090 * 13 12 11 39 39 H 1.09000 * 109.45937 * 55.00178 * 14 13 12 40 40 H 1.08993 * 109.50124 * 298.56729 * 15 14 13 41 41 H 1.09002 * 109.49705 * 58.67322 * 15 14 13 42 42 H 1.08998 * 109.60023 * 294.86754 * 16 15 14 43 43 H 1.09002 * 109.69950 * 174.50733 * 16 15 14 44 44 H 0.96998 * 120.00089 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.59334 * 293.82029 * 26 17 16 46 46 H 1.09006 * 109.70134 * 173.46386 * 26 17 16 47 47 H 1.09000 * 109.49497 * 301.33617 * 27 14 13 48 48 H 1.09001 * 109.50094 * 61.39604 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8771 3.5084 0.0000 6 6 3.2526 3.6575 -0.0005 7 6 4.0587 2.5334 -0.0060 8 6 3.4450 1.2752 -0.0002 9 6 4.2569 0.0435 -0.0009 10 8 3.7125 -1.0436 -0.0008 11 7 5.6023 0.1233 -0.0015 12 6 6.4087 -1.0998 -0.0016 13 6 7.8938 -0.7316 -0.0029 14 6 8.7359 -2.0090 -0.0037 15 6 8.5080 -2.7706 1.3041 16 6 9.3256 -4.0660 1.2849 17 7 10.7317 -3.7336 1.0176 18 6 11.7229 -4.1687 1.8561 19 1 11.5090 -4.3439 2.9001 20 6 13.0029 -4.3847 1.3642 21 7 13.1990 -4.4995 0.0678 22 14 14.4471 -4.5122 2.5422 23 1 14.6320 -5.9289 2.9470 24 1 15.6784 -4.0245 1.8705 25 1 14.1788 -3.6845 3.7456 26 6 11.0537 -2.9259 -0.1667 27 6 10.2165 -1.6435 -0.1314 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.2485 4.3867 0.0009 32 1 3.6934 4.6435 -0.0013 33 1 5.1349 2.6240 -0.0107 34 1 6.0368 0.9906 -0.0018 35 1 6.1801 -1.6859 0.8885 36 1 6.1793 -1.6861 -0.8915 37 1 8.1220 -0.1458 -0.8934 38 1 8.1235 -0.1451 0.8866 39 1 8.4428 -2.6366 -0.8453 40 1 8.8242 -2.1529 2.1446 41 1 7.4495 -3.0102 1.4058 42 1 8.9502 -4.7238 0.5010 43 1 9.2454 -4.5654 2.2504 44 1 14.0935 -4.6501 -0.2760 45 1 10.8193 -3.4906 -1.0690 46 1 12.1134 -2.6707 -0.1603 47 1 10.3742 -1.0806 -1.0515 48 1 10.5163 -1.0360 0.7225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753597176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:50 Heat of formation + Delta-G solvation = -23.415105 kcal Electronic energy + Delta-G solvation = -27972.349086 eV Core-core repulsion = 24028.024570 eV Total energy + Delta-G solvation = -3944.324516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.25447 -39.35652 -38.23579 -37.93049 -35.37650 -33.75901 -32.94786 -31.37571 -31.07307 -29.92582 -28.56078 -27.54067 -25.58387 -24.53067 -23.41393 -22.90811 -21.96836 -20.97529 -20.56954 -19.05148 -18.87567 -17.75288 -17.48791 -16.72980 -16.43095 -15.75327 -15.50026 -15.45145 -14.81822 -14.70924 -14.40892 -14.26592 -13.84683 -13.63899 -13.50602 -13.44107 -13.27235 -13.01325 -12.78351 -12.51336 -12.19077 -12.07881 -11.57193 -11.54537 -11.31074 -11.19134 -10.86974 -10.66395 -10.48953 -10.42544 -10.39896 -10.17626 -10.13005 -9.90889 -9.79894 -9.43246 -9.35094 -9.14260 -8.89378 -8.42970 -6.61074 -5.75019 -3.16870 0.26555 0.78822 2.67559 2.70480 2.97180 3.39026 3.45840 3.46535 3.48385 3.82353 4.24860 4.36062 4.52724 4.53254 4.71852 4.89885 4.97915 5.01393 5.05446 5.07980 5.30583 5.32191 5.36461 5.42167 5.49498 5.55689 5.64834 5.77405 5.83232 5.86284 6.04781 6.06985 6.16300 6.25711 6.37654 6.41799 6.60268 6.68258 6.75205 6.85188 6.87672 6.91007 7.06980 7.25969 7.40156 7.42533 7.70600 7.83134 8.10855 8.49728 9.26082 9.89995 10.47318 11.33450 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.001885 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.462967 B =14847.317057 C =15339.967877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.270 6.270 3 C 0.372 3.628 4 N -0.546 5.546 5 C 0.165 3.835 6 C -0.221 4.221 7 C -0.009 4.009 8 C -0.209 4.209 9 C 0.560 3.440 10 O -0.515 6.515 11 N -0.727 5.727 12 C 0.119 3.881 13 C -0.125 4.125 14 C -0.075 4.075 15 C -0.130 4.130 16 C 0.144 3.856 17 N -0.593 5.593 18 C -0.249 4.249 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.171 3.829 27 C -0.134 4.134 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.396 0.604 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.016 0.984 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.016 0.984 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.335 19.016 -2.040 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.174 6.174 3 C 0.192 3.808 4 N -0.271 5.271 5 C 0.008 3.992 6 C -0.241 4.241 7 C -0.035 4.035 8 C -0.215 4.215 9 C 0.345 3.655 10 O -0.390 6.390 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.163 4.163 14 C -0.094 4.094 15 C -0.169 4.169 16 C 0.018 3.982 17 N -0.316 5.316 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.045 3.955 27 C -0.173 4.173 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.182 0.818 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.104 0.896 47 H 0.065 0.935 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.371 17.752 -2.116 29.425 hybrid contribution 1.670 0.683 0.505 1.873 sum -21.701 18.435 -1.612 28.520 Atomic orbital electron populations 1.22977 0.77396 1.03468 1.02258 1.86550 1.22435 1.22929 1.85446 1.19896 0.88168 0.85178 0.87599 1.67495 1.40376 0.98703 1.20490 1.22683 0.93123 0.93766 0.89615 1.21945 0.94759 0.99978 1.07447 1.21671 1.00736 0.90548 0.90506 1.20087 0.91701 0.95132 1.14578 1.17762 0.82069 0.88284 0.77341 1.90851 1.71595 1.28340 1.48262 1.45964 1.05716 1.10374 1.75905 1.21561 0.90067 0.85948 1.02836 1.21915 0.92698 0.99596 1.02097 1.20970 0.95477 0.94379 0.98555 1.22119 0.98771 0.99163 0.96836 1.20905 0.85889 0.93025 0.98398 1.44054 1.00636 1.58552 1.28334 1.19176 0.89194 1.39322 0.90232 0.91824 1.25044 0.98852 1.00221 0.95712 1.70034 1.20920 1.52682 1.11214 0.86322 0.82384 0.77820 0.80404 1.21438 1.21606 1.20546 1.20753 0.98913 0.87522 0.88333 1.22219 0.94496 1.00731 0.99868 0.92235 0.88223 0.92214 0.81807 0.83744 0.83716 0.76985 0.90819 0.91366 0.91775 0.91571 0.91650 0.92445 0.93032 0.96583 0.92997 0.93715 0.96577 0.89623 0.93479 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.38 101.05 1.05 1.34 16 2 O -0.27 -3.46 8.58 -39.76 -0.34 -3.81 16 3 C 0.37 4.34 7.51 -16.61 -0.12 4.22 16 4 N -0.55 -5.28 9.21 -12.98 -0.12 -5.40 16 5 C 0.17 1.06 11.17 -17.49 -0.20 0.87 16 6 C -0.22 -1.19 10.09 -39.50 -0.40 -1.59 16 7 C -0.01 -0.06 9.64 -38.89 -0.37 -0.43 16 8 C -0.21 -2.25 5.90 -104.69 -0.62 -2.87 16 9 C 0.56 7.33 7.77 -12.48 -0.10 7.24 16 10 O -0.51 -8.84 15.19 -16.48 -0.25 -9.09 16 11 N -0.73 -7.74 5.51 -61.35 -0.34 -8.08 16 12 C 0.12 1.46 5.43 -4.04 -0.02 1.44 16 13 C -0.13 -1.51 4.80 -26.73 -0.13 -1.63 16 14 C -0.07 -1.19 2.15 -90.58 -0.19 -1.38 16 15 C -0.13 -2.23 5.15 -26.61 -0.14 -2.37 16 16 C 0.14 3.08 6.52 -3.70 -0.02 3.05 16 17 N -0.59 -15.00 2.99 -172.32 -0.52 -15.52 16 18 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 19 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 21 N -0.90 -26.45 11.19 55.49 0.62 -25.83 16 22 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 27 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 31 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 32 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 33 H 0.15 0.58 6.52 -52.49 -0.34 0.23 16 34 H 0.40 2.93 6.57 -40.82 -0.27 2.66 16 35 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -34.78 385.30 -9.30 -44.08 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.48 Total: -1.12 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.66 Total: 2.16 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.35 Total: -54.82 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.59 Total: -12.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.78 -9.30 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.665 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds