Wall clock time and date at job start Tue Mar 31 2020 17:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35431 * 117.00008 * 2 1 4 4 N 1.32240 * 119.79923 * 0.02562 * 3 2 1 5 5 C 1.31873 * 121.79671 * 180.02562 * 4 3 2 6 6 C 1.38359 * 121.18996 * 359.97438 * 5 4 3 7 7 C 1.38330 * 119.45526 * 0.25984 * 6 5 4 8 8 C 1.39987 * 118.35177 * 359.50597 * 7 6 5 9 9 C 1.47521 * 120.60289 * 180.21555 * 8 7 6 10 10 O 1.21587 * 120.00715 * 180.26855 * 9 8 7 11 11 N 1.34779 * 119.99834 * 0.27760 * 9 8 7 12 12 C 1.46500 * 119.99964 * 179.97438 * 11 9 8 13 13 C 1.53009 * 109.47025 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47006 * 180.02562 * 13 12 11 15 15 C 1.53040 * 109.45669 * 295.02392 * 14 13 12 16 16 C 1.53201 * 109.30740 * 178.60186 * 15 14 13 17 17 N 1.46930 * 108.76410 * 54.66071 * 16 15 14 18 18 C 1.36930 * 120.62923 * 126.40277 * 17 16 15 19 19 H 1.07998 * 120.00617 * 331.82493 * 18 17 16 20 20 C 1.38813 * 119.99754 * 151.82129 * 18 17 16 21 21 N 1.31616 * 120.00321 * 343.07425 * 20 18 17 22 22 Si 1.86808 * 119.99827 * 163.07242 * 20 18 17 23 23 H 1.48495 * 109.47062 * 90.00170 * 22 20 18 24 24 H 1.48499 * 109.46940 * 210.00354 * 22 20 18 25 25 H 1.48502 * 109.46997 * 330.00074 * 22 20 18 26 26 C 1.46921 * 118.73481 * 306.37764 * 17 16 15 27 27 C 1.53041 * 109.45881 * 174.97366 * 14 13 12 28 28 H 1.09005 * 109.47102 * 59.99454 * 1 2 3 29 29 H 1.08991 * 109.47300 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46964 * 300.00426 * 1 2 3 31 31 H 1.08007 * 119.40507 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.27286 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.82637 * 179.74479 * 7 6 5 34 34 H 0.96997 * 120.00185 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.47681 * 299.99902 * 12 11 9 36 36 H 1.09006 * 109.47142 * 60.00413 * 12 11 9 37 37 H 1.09005 * 109.46686 * 300.00073 * 13 12 11 38 38 H 1.08997 * 109.46911 * 60.00090 * 13 12 11 39 39 H 1.09000 * 109.45937 * 55.00178 * 14 13 12 40 40 H 1.08993 * 109.50124 * 298.56729 * 15 14 13 41 41 H 1.09002 * 109.49705 * 58.67322 * 15 14 13 42 42 H 1.08998 * 109.60023 * 294.86754 * 16 15 14 43 43 H 1.09002 * 109.69950 * 174.50733 * 16 15 14 44 44 H 0.96998 * 120.00089 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.59334 * 293.82029 * 26 17 16 46 46 H 1.09006 * 109.70134 * 173.46386 * 26 17 16 47 47 H 1.09000 * 109.49497 * 301.33617 * 27 14 13 48 48 H 1.09001 * 109.50094 * 61.39604 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8771 3.5084 0.0000 6 6 3.2526 3.6575 -0.0005 7 6 4.0587 2.5334 -0.0060 8 6 3.4450 1.2752 -0.0002 9 6 4.2569 0.0435 -0.0009 10 8 3.7125 -1.0436 -0.0008 11 7 5.6023 0.1233 -0.0015 12 6 6.4087 -1.0998 -0.0016 13 6 7.8938 -0.7316 -0.0029 14 6 8.7359 -2.0090 -0.0037 15 6 8.5080 -2.7706 1.3041 16 6 9.3256 -4.0660 1.2849 17 7 10.7317 -3.7336 1.0176 18 6 11.7229 -4.1687 1.8561 19 1 11.5090 -4.3439 2.9001 20 6 13.0029 -4.3847 1.3642 21 7 13.1990 -4.4995 0.0678 22 14 14.4471 -4.5122 2.5422 23 1 14.6320 -5.9289 2.9470 24 1 15.6784 -4.0245 1.8705 25 1 14.1788 -3.6845 3.7456 26 6 11.0537 -2.9259 -0.1667 27 6 10.2165 -1.6435 -0.1314 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.2485 4.3867 0.0009 32 1 3.6934 4.6435 -0.0013 33 1 5.1349 2.6240 -0.0107 34 1 6.0368 0.9906 -0.0018 35 1 6.1801 -1.6859 0.8885 36 1 6.1793 -1.6861 -0.8915 37 1 8.1220 -0.1458 -0.8934 38 1 8.1235 -0.1451 0.8866 39 1 8.4428 -2.6366 -0.8453 40 1 8.8242 -2.1529 2.1446 41 1 7.4495 -3.0102 1.4058 42 1 8.9502 -4.7238 0.5010 43 1 9.2454 -4.5654 2.2504 44 1 14.0935 -4.6501 -0.2760 45 1 10.8193 -3.4906 -1.0690 46 1 12.1134 -2.6707 -0.1603 47 1 10.3742 -1.0806 -1.0515 48 1 10.5163 -1.0360 0.7225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753597176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:49 Heat of formation + Delta-G solvation = -47.293412 kcal Electronic energy + Delta-G solvation = -27973.384527 eV Core-core repulsion = 24028.024570 eV Total energy + Delta-G solvation = -3945.359957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93375 -40.31009 -39.43030 -38.90867 -36.68378 -35.14572 -33.84364 -32.88529 -31.87983 -31.53301 -29.97537 -28.23319 -27.01655 -25.59734 -24.52093 -23.88048 -23.49039 -22.15745 -21.73271 -20.61037 -19.55222 -18.69487 -18.53388 -18.14211 -17.17730 -16.86527 -16.67150 -16.43594 -15.99177 -15.76245 -15.42544 -15.29369 -15.27294 -15.06188 -14.86574 -14.43500 -14.32673 -14.09940 -13.91433 -13.78394 -13.53516 -13.01487 -12.93054 -12.81469 -12.71760 -12.53315 -12.27335 -12.21576 -12.12663 -11.92146 -11.79796 -11.51760 -11.24667 -11.04507 -11.02338 -10.97181 -10.62641 -10.51773 -10.10850 -9.54640 -8.65448 -7.86291 -5.31801 -0.34920 0.24006 1.46390 1.47174 1.57582 1.86264 2.05556 2.12879 2.51838 2.80290 3.26602 3.27919 3.69596 3.74663 3.77450 3.88411 3.95218 3.99000 4.14096 4.25427 4.32591 4.37716 4.38101 4.44272 4.50730 4.60749 4.68611 4.69805 4.76938 4.79689 4.89795 4.91890 5.05074 5.06013 5.09354 5.13310 5.29069 5.37605 5.40724 5.42209 5.45324 5.48874 5.57789 5.68569 5.82945 6.19556 6.40681 6.52333 6.74982 7.16630 7.23223 7.88735 8.40461 9.19717 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.001885 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.462967 B =14847.317057 C =15339.967877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.344 3.656 4 N -0.563 5.563 5 C 0.161 3.839 6 C -0.205 4.205 7 C -0.002 4.002 8 C -0.236 4.236 9 C 0.556 3.444 10 O -0.568 6.568 11 N -0.711 5.711 12 C 0.124 3.876 13 C -0.107 4.107 14 C -0.071 4.071 15 C -0.117 4.117 16 C 0.137 3.863 17 N -0.611 5.611 18 C -0.262 4.262 19 H 0.064 0.936 20 C -0.054 4.054 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.173 3.827 27 C -0.120 4.120 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.200 0.800 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.414 0.586 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.007 0.993 43 H 0.047 0.953 44 H 0.250 0.750 45 H -0.010 1.010 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.753 22.742 -1.471 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.210 6.210 3 C 0.165 3.835 4 N -0.288 5.288 5 C 0.005 3.995 6 C -0.225 4.225 7 C -0.028 4.028 8 C -0.242 4.242 9 C 0.344 3.656 10 O -0.448 6.448 11 N -0.364 5.364 12 C 0.001 3.999 13 C -0.145 4.145 14 C -0.090 4.090 15 C -0.156 4.156 16 C 0.012 3.988 17 N -0.335 5.335 18 C -0.393 4.393 19 H 0.081 0.919 20 C -0.249 4.249 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.195 1.195 26 C 0.048 3.952 27 C -0.158 4.158 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.217 0.783 32 H 0.203 0.797 33 H 0.194 0.806 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.009 0.991 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.796 21.530 -1.538 32.127 hybrid contribution 1.741 -0.427 0.311 1.820 sum -22.055 21.103 -1.227 30.549 Atomic orbital electron populations 1.23094 0.76133 1.04332 1.02581 1.86496 1.24034 1.24492 1.85993 1.20171 0.88823 0.85403 0.89087 1.67529 1.40791 0.99263 1.21170 1.23454 0.94592 0.93618 0.87839 1.22417 0.94110 1.01219 1.04758 1.22082 1.02483 0.89271 0.88951 1.20074 0.91295 0.95579 1.17291 1.18202 0.82640 0.88516 0.76262 1.90815 1.72639 1.30432 1.50886 1.45738 1.04961 1.10782 1.74924 1.21357 0.90485 0.86470 1.01596 1.21704 0.91218 0.97536 1.04008 1.20884 0.94514 0.96188 0.97402 1.21970 0.99007 0.96900 0.97737 1.21076 0.84682 0.95310 0.97741 1.44347 1.01723 1.59144 1.28320 1.19504 0.90209 1.38847 0.90709 0.91873 1.25826 1.01309 1.00510 0.97234 1.70194 1.21084 1.54020 1.12934 0.85275 0.78895 0.77702 0.78566 1.21298 1.21681 1.19465 1.20623 0.98087 0.89586 0.86917 1.22010 0.95004 0.97684 1.01150 0.91829 0.87170 0.91851 0.78309 0.79674 0.80590 0.74774 0.92293 0.92674 0.89448 0.90038 0.92404 0.92363 0.90945 0.97510 0.93396 0.94126 0.99149 0.93007 0.91011 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.38 113.37 1.18 1.78 16 2 O -0.31 -8.25 8.58 -66.46 -0.57 -8.82 16 3 C 0.34 8.04 7.51 85.13 0.64 8.68 16 4 N -0.56 -10.19 9.21 -307.98 -2.84 -13.03 16 5 C 0.16 1.54 11.17 84.72 0.95 2.49 16 6 C -0.21 -1.29 10.09 22.32 0.23 -1.06 16 7 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 8 C -0.24 -4.84 5.90 -19.91 -0.12 -4.95 16 9 C 0.56 14.36 7.77 86.69 0.67 15.03 16 10 O -0.57 -20.23 15.19 16.83 0.26 -19.97 16 11 N -0.71 -13.63 5.51 -466.26 -2.57 -16.20 16 12 C 0.12 2.84 5.43 86.38 0.47 3.31 16 13 C -0.11 -2.21 4.80 30.60 0.15 -2.07 16 14 C -0.07 -2.12 2.15 -10.77 -0.02 -2.14 16 15 C -0.12 -3.89 5.15 30.68 0.16 -3.74 16 16 C 0.14 5.92 6.52 86.36 0.56 6.49 16 17 N -0.61 -31.54 2.99 -699.09 -2.09 -33.63 16 18 C -0.26 -14.81 9.58 84.03 0.81 -14.00 16 19 H 0.06 3.49 7.88 -2.91 -0.02 3.46 16 20 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 21 N -0.94 -56.37 11.19 21.65 0.24 -56.13 16 22 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.17 8.43 5.30 86.36 0.46 8.89 16 27 C -0.12 -4.21 5.36 30.67 0.16 -4.05 16 28 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 29 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 31 H 0.20 0.33 8.06 -2.91 -0.02 0.31 16 32 H 0.19 -0.32 8.06 -2.91 -0.02 -0.34 16 33 H 0.18 0.53 6.52 -2.91 -0.02 0.51 16 34 H 0.41 4.58 6.57 -92.71 -0.61 3.97 16 35 H 0.06 1.54 6.54 -2.39 -0.02 1.52 16 36 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 2.12 6.50 -2.39 -0.02 2.11 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 45 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.05 2.85 6.07 -2.38 -0.01 2.83 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -80.93 385.30 1.74 -79.20 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.35 Total: 8.89 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.92 Total: 12.21 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -7.25 Total: -118.98 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.31 Total: -28.79 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -80.93 1.74 -79.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.903 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds