Wall clock time and date at job start Tue Mar 31 2020 17:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35692 * 116.99751 * 2 1 4 4 C 1.38895 * 119.62234 * 180.25967 * 3 2 1 5 5 C 1.39569 * 118.94388 * 180.29453 * 4 3 2 6 6 C 1.48166 * 120.89261 * 179.72860 * 5 4 3 7 7 O 1.21512 * 119.99580 * 35.33175 * 6 5 4 8 8 N 1.34772 * 120.00187 * 215.32940 * 6 5 4 9 9 C 1.46961 * 120.65235 * 6.18898 * 8 6 5 10 10 C 1.53195 * 108.88711 * 126.46317 * 9 8 6 11 11 C 1.53044 * 109.31258 * 54.55697 * 10 9 8 12 12 C 1.53044 * 109.53591 * 298.63357 * 11 10 9 13 13 C 1.46929 * 120.63133 * 186.00432 * 8 6 5 14 14 H 1.08989 * 109.58840 * 113.68159 * 13 8 6 15 15 C 1.53003 * 109.58497 * 353.39534 * 13 8 6 16 16 C 1.52994 * 109.47153 * 180.16735 * 15 13 8 17 17 N 1.46492 * 109.47372 * 185.24586 * 16 15 13 18 18 C 1.36941 * 120.00244 * 180.27494 * 17 16 15 19 19 H 1.08000 * 119.99790 * 359.72198 * 18 17 16 20 20 C 1.38809 * 120.00050 * 179.72390 * 18 17 16 21 21 N 1.31619 * 119.99996 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00175 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47447 * 90.00051 * 22 20 18 24 24 H 1.48503 * 109.47197 * 209.99950 * 22 20 18 25 25 H 1.48505 * 109.47096 * 329.99827 * 22 20 18 26 26 C 1.39964 * 118.21895 * 359.45570 * 5 4 3 27 27 C 1.37985 * 119.13467 * 0.27605 * 26 5 4 28 28 N 1.31913 * 120.97366 * 359.97438 * 27 26 5 29 29 H 1.08997 * 109.47176 * 300.00143 * 1 2 3 30 30 H 1.09001 * 109.47507 * 60.00168 * 1 2 3 31 31 H 1.09004 * 109.46904 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.52804 * 0.04529 * 4 3 2 33 33 H 1.08997 * 109.59681 * 6.59910 * 9 8 6 34 34 H 1.09004 * 109.58159 * 246.31295 * 9 8 6 35 35 H 1.08999 * 109.49458 * 294.60014 * 10 9 8 36 36 H 1.09004 * 109.52387 * 174.52296 * 10 9 8 37 37 H 1.09001 * 109.45674 * 178.61579 * 11 10 9 38 38 H 1.08997 * 109.45874 * 58.65361 * 11 10 9 39 39 H 1.09003 * 109.49566 * 301.41452 * 12 11 10 40 40 H 1.08998 * 109.49602 * 181.31886 * 12 11 10 41 41 H 1.09002 * 109.47229 * 60.16666 * 15 13 8 42 42 H 1.09004 * 109.47237 * 300.16926 * 15 13 8 43 43 H 1.09002 * 109.47234 * 65.24458 * 16 15 13 44 44 H 1.09001 * 109.46856 * 305.24379 * 16 15 13 45 45 H 0.97007 * 120.00250 * 359.97438 * 17 16 15 46 46 H 0.97007 * 120.00422 * 180.02562 * 21 20 18 47 47 H 1.08005 * 120.43766 * 180.25451 * 26 5 4 48 48 H 1.08001 * 119.51243 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2727 -0.0055 5 6 4.0513 2.5236 0.0009 6 6 5.5282 2.6418 0.0014 7 8 6.2022 1.8375 -0.6113 8 7 6.1241 3.6412 0.6815 9 6 5.3358 4.5402 1.5359 10 6 5.9524 4.5587 2.9382 11 6 7.4338 4.9285 2.8348 12 6 8.1667 3.8767 1.9988 13 6 7.5753 3.8505 0.5859 14 1 7.7756 4.7992 0.0883 15 6 8.2066 2.7087 -0.2132 16 6 9.7180 2.9270 -0.3075 17 7 10.3059 1.9044 -1.1762 18 6 11.6557 1.8952 -1.4066 19 1 12.2863 2.6446 -0.9515 20 6 12.2135 0.9227 -2.2252 21 7 13.5108 0.9142 -2.4470 22 14 11.1227 -0.3730 -3.0130 23 1 10.6501 0.1142 -4.3338 24 1 11.8969 -1.6270 -3.1962 25 1 9.9541 -0.6365 -2.1354 26 6 3.2393 3.6637 0.0008 27 6 1.8679 3.5116 0.0004 28 7 1.3177 2.3127 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0231 0.3685 -0.0105 33 1 4.3080 4.1819 1.5933 34 1 5.3491 5.5467 1.1176 35 1 5.8542 3.5724 3.3918 36 1 5.4356 5.2952 3.5536 37 1 7.8691 4.9664 3.8335 38 1 7.5322 5.9040 2.3587 39 1 8.0478 2.8969 2.4613 40 1 9.2260 4.1281 1.9452 41 1 7.7794 2.6872 -1.2158 42 1 8.0069 1.7611 0.2872 43 1 10.1582 2.8557 0.6871 44 1 9.9171 3.9149 -0.7230 45 1 9.7396 1.2310 -1.5848 46 1 13.9006 0.2349 -3.0193 47 1 3.6804 4.6496 0.0015 48 1 1.2355 4.3872 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753781010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:33 Heat of formation + Delta-G solvation = -24.506849 kcal Electronic energy + Delta-G solvation = -29040.216557 eV Core-core repulsion = 25095.844699 eV Total energy + Delta-G solvation = -3944.371858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.26617 -41.20065 -38.99535 -38.46339 -37.16907 -34.98092 -34.07685 -33.39489 -32.69513 -31.72728 -29.58522 -28.33980 -26.98937 -25.42734 -25.22599 -24.34642 -23.64136 -22.28954 -21.96473 -20.69340 -19.75135 -19.02870 -18.34335 -17.31986 -17.14692 -17.08367 -16.93309 -16.68305 -16.42624 -15.84453 -15.77638 -15.39285 -15.24610 -15.07107 -14.88621 -14.68415 -14.42647 -14.34114 -14.26244 -13.98911 -13.70709 -13.29509 -13.08663 -12.92488 -12.79074 -12.68408 -12.42435 -12.20875 -12.13569 -11.94367 -11.87955 -11.82584 -11.54975 -11.45071 -11.04058 -10.98267 -10.96322 -10.21334 -9.62393 -9.58473 -9.32297 -8.07480 -5.39668 -0.36056 0.03407 1.34025 1.34543 1.43635 1.52852 1.75592 2.13379 2.43552 2.65137 3.13869 3.23750 3.31666 3.56091 3.78205 3.85351 3.87605 3.90864 3.98889 4.09223 4.11783 4.23683 4.36337 4.40111 4.42868 4.45796 4.49564 4.58407 4.64875 4.68925 4.71792 4.74727 4.78045 4.88921 4.94795 4.96996 5.09126 5.16219 5.24442 5.25757 5.35323 5.36637 5.49277 5.62561 5.71176 6.13372 6.17851 6.28538 6.69289 7.00016 7.03107 7.81445 7.99821 9.14004 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.003170 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.017514 B = 8831.716220 C =10872.023774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.325 6.325 3 C 0.310 3.690 4 C -0.163 4.163 5 C -0.054 4.054 6 C 0.547 3.453 7 O -0.558 6.558 8 N -0.592 5.592 9 C 0.085 3.915 10 C -0.132 4.132 11 C -0.116 4.116 12 C -0.133 4.133 13 C 0.157 3.843 14 H 0.094 0.906 15 C -0.099 4.099 16 C 0.149 3.851 17 N -0.763 5.763 18 C -0.234 4.234 19 H 0.063 0.937 20 C -0.060 4.060 21 N -0.980 5.980 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.266 1.266 26 C -0.173 4.173 27 C 0.147 3.853 28 N -0.535 5.535 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.028 0.972 44 H 0.029 0.971 45 H 0.362 0.638 46 H 0.259 0.741 47 H 0.181 0.819 48 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.936 11.937 12.856 37.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.233 6.233 3 C 0.132 3.868 4 C -0.184 4.184 5 C -0.064 4.064 6 C 0.335 3.665 7 O -0.437 6.437 8 N -0.324 5.324 9 C -0.035 4.035 10 C -0.170 4.170 11 C -0.153 4.153 12 C -0.171 4.171 13 C 0.054 3.946 14 H 0.112 0.888 15 C -0.137 4.137 16 C 0.023 3.977 17 N -0.408 5.408 18 C -0.364 4.364 19 H 0.081 0.919 20 C -0.252 4.252 21 N -0.631 5.631 22 Si 0.778 3.222 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.191 1.191 26 C -0.193 4.193 27 C -0.009 4.009 28 N -0.259 5.259 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.194 0.806 46 H 0.068 0.932 47 H 0.198 0.802 48 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -33.168 11.253 12.583 37.216 hybrid contribution 0.973 -1.384 -0.789 1.867 sum -32.194 9.869 11.794 35.679 Atomic orbital electron populations 1.23107 0.75241 1.04721 1.02705 1.86253 1.24902 1.24452 1.87645 1.19676 0.88699 0.85495 0.92928 1.21035 0.92616 0.98832 1.05954 1.20108 0.93045 0.94261 0.99034 1.18642 0.87390 0.80992 0.79478 1.90936 1.64554 1.42673 1.45537 1.48118 1.08084 1.30674 1.45491 1.22633 0.96024 0.94689 0.90151 1.21944 0.96140 1.02647 0.96276 1.21537 0.95114 0.98398 1.00268 1.22035 1.00656 1.00257 0.94138 1.21241 0.78263 0.98350 0.96702 0.88774 1.22021 0.92789 0.98069 1.00866 1.20983 0.92764 0.91107 0.92854 1.42834 1.04497 1.34909 1.58562 1.19102 0.83957 1.10362 1.23022 0.91890 1.25413 0.96880 1.01465 1.01410 1.69859 1.11345 1.38181 1.43705 0.85479 0.78542 0.79246 0.78957 1.20380 1.21441 1.19140 1.22667 0.94740 0.99404 1.02501 1.23163 0.92813 0.94030 0.90878 1.67301 1.41193 0.99328 1.18121 0.91697 0.92097 0.86380 0.85252 0.87341 0.87696 0.93026 0.87455 0.90780 0.90004 0.93203 0.90537 0.91834 0.93055 0.95355 0.95338 0.80603 0.93198 0.80211 0.77244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.33 -6.95 10.48 -90.11 -0.94 -7.89 16 3 C 0.31 6.74 7.49 84.80 0.63 7.37 16 4 C -0.16 -3.93 9.66 22.75 0.22 -3.71 16 5 C -0.05 -1.13 5.29 -19.90 -0.11 -1.24 16 6 C 0.55 14.67 7.34 86.88 0.64 15.31 16 7 O -0.56 -20.70 12.30 -3.75 -0.05 -20.75 16 8 N -0.59 -12.25 2.98 -797.97 -2.38 -14.63 16 9 C 0.09 0.89 4.82 86.36 0.42 1.30 16 10 C -0.13 -1.34 6.08 30.67 0.19 -1.16 16 11 C -0.12 -1.52 5.88 30.62 0.18 -1.34 16 12 C -0.13 -2.86 4.86 30.67 0.15 -2.71 16 13 C 0.16 3.88 3.01 44.97 0.14 4.02 16 14 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.10 -3.56 3.25 30.59 0.10 -3.46 16 16 C 0.15 6.26 5.77 86.38 0.50 6.75 16 17 N -0.76 -40.32 5.41 -343.47 -1.86 -42.18 16 18 C -0.23 -14.34 10.47 84.03 0.88 -13.46 16 19 H 0.06 4.12 8.06 -2.91 -0.02 4.10 16 20 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 21 N -0.98 -65.48 13.97 21.65 0.30 -65.18 16 22 Si 0.95 49.96 27.74 68.60 1.90 51.86 16 23 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 25 H -0.27 -13.47 6.52 99.48 0.65 -12.82 16 26 C -0.17 -2.07 7.47 22.63 0.17 -1.90 16 27 C 0.15 1.55 11.17 84.62 0.94 2.50 16 28 N -0.53 -9.17 9.18 -309.12 -2.84 -12.01 16 29 H 0.06 0.76 8.10 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.13 3.57 8.05 -2.91 -0.02 3.54 16 33 H 0.11 0.86 4.52 -2.39 -0.01 0.85 16 34 H 0.11 0.53 8.07 -2.38 -0.02 0.52 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.77 6.89 -2.39 -0.02 1.76 16 41 H 0.06 2.56 6.48 -2.39 -0.02 2.54 16 42 H 0.05 2.07 7.01 -2.38 -0.02 2.05 16 43 H 0.03 1.17 6.87 -2.39 -0.02 1.16 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 45 H 0.36 19.14 5.53 -92.70 -0.51 18.62 16 46 H 0.26 16.42 8.31 -92.70 -0.77 15.65 16 47 H 0.18 0.97 6.20 -2.91 -0.02 0.95 16 48 H 0.21 0.32 8.06 -2.91 -0.02 0.29 16 Total: -1.00 -84.14 376.62 1.23 -82.91 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.40 Total: 21.25 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.69 Total: 6.61 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -6.77 Total: -134.00 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.99 Total: -28.64 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 1.90 Total: 51.86 kcal Total: -84.14 1.23 -82.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753781010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.403 kcal (2) G-P(sol) polarization free energy of solvation -84.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds