Wall clock time and date at job start Tue Mar 31 2020 17:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35691 * 117.00150 * 2 1 4 4 C 1.38891 * 119.62284 * 180.25296 * 3 2 1 5 5 C 1.39577 * 118.94378 * 180.27011 * 4 3 2 6 6 C 1.48160 * 120.89129 * 179.75503 * 5 4 3 7 7 O 1.21511 * 119.99796 * 327.06588 * 6 5 4 8 8 N 1.34779 * 120.00196 * 147.06913 * 6 5 4 9 9 C 1.46923 * 120.62746 * 2.10889 * 8 6 5 10 10 C 1.53195 * 108.77582 * 233.63353 * 9 8 6 11 11 C 1.53036 * 109.31247 * 305.36486 * 10 9 8 12 12 C 1.53039 * 109.53855 * 61.36369 * 11 10 9 13 13 C 1.46919 * 120.63327 * 182.13780 * 8 6 5 14 14 H 1.09000 * 109.70168 * 246.22809 * 13 8 6 15 15 C 1.53002 * 109.58644 * 6.57560 * 13 8 6 16 16 C 1.53003 * 109.47212 * 178.13520 * 15 13 8 17 17 N 1.46495 * 109.47009 * 174.89609 * 16 15 13 18 18 C 1.36940 * 119.99911 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00356 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00590 * 180.02562 * 20 18 17 22 22 Si 1.86810 * 119.99752 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46884 * 269.99903 * 22 20 18 24 24 H 1.48495 * 109.47044 * 29.99433 * 22 20 18 25 25 H 1.48503 * 109.47230 * 149.99953 * 22 20 18 26 26 C 1.39968 * 118.21692 * 359.48772 * 5 4 3 27 27 C 1.37978 * 119.13214 * 0.26817 * 26 5 4 28 28 N 1.31911 * 120.97912 * 359.97438 * 27 26 5 29 29 H 1.09002 * 109.46975 * 60.00095 * 1 2 3 30 30 H 1.08993 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46906 * 300.00237 * 1 2 3 32 32 H 1.08000 * 120.53169 * 0.04872 * 4 3 2 33 33 H 1.09006 * 109.58903 * 113.84756 * 9 8 6 34 34 H 1.09000 * 109.70578 * 353.49325 * 9 8 6 35 35 H 1.09006 * 109.49640 * 185.41948 * 10 9 8 36 36 H 1.08993 * 109.52274 * 65.33258 * 10 9 8 37 37 H 1.09004 * 109.45968 * 301.34656 * 11 10 9 38 38 H 1.08995 * 109.46467 * 181.38571 * 11 10 9 39 39 H 1.08999 * 109.50347 * 178.68285 * 12 11 10 40 40 H 1.09004 * 109.49758 * 58.58766 * 12 11 10 41 41 H 1.08997 * 109.46831 * 58.13603 * 15 13 8 42 42 H 1.08996 * 109.47034 * 298.13515 * 15 13 8 43 43 H 1.09005 * 109.46935 * 54.90327 * 16 15 13 44 44 H 1.08994 * 109.47339 * 294.89943 * 16 15 13 45 45 H 0.96999 * 120.00672 * 0.02562 * 17 16 15 46 46 H 0.97002 * 120.00643 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.43255 * 180.25413 * 26 5 4 48 48 H 1.08004 * 119.50758 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4325 1.2725 -0.0053 5 6 4.0515 2.5235 0.0005 6 6 5.5284 2.6415 0.0006 7 8 6.2045 1.8068 0.5685 8 7 6.1219 3.6748 -0.6291 9 6 5.3166 4.7167 -1.2806 10 6 5.7773 4.8588 -2.7348 11 6 7.2850 5.1191 -2.7649 12 6 8.0218 3.9330 -2.1385 13 6 7.5865 3.7803 -0.6777 14 1 7.9114 4.6502 -0.1068 15 6 8.2118 2.5156 -0.0856 16 6 9.7361 2.6081 -0.1799 17 7 10.3379 1.4556 0.4952 18 6 11.7001 1.3226 0.5395 19 1 12.3308 2.0676 0.0771 20 6 12.2704 0.2304 1.1787 21 7 13.5797 0.1027 1.2218 22 14 11.1795 -1.0585 1.9778 23 1 10.9211 -0.6812 3.3906 24 1 9.8913 -1.1406 1.2438 25 1 11.8591 -2.3782 1.9342 26 6 3.2395 3.6636 0.0005 27 6 1.8681 3.5116 0.0004 28 7 1.3179 2.3127 -0.0002 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0231 0.3683 -0.0103 33 1 5.4541 5.6642 -0.7595 34 1 4.2636 4.4361 -1.2567 35 1 5.2546 5.6936 -3.2020 36 1 5.5557 3.9406 -3.2784 37 1 7.5086 6.0245 -2.2005 38 1 7.6113 5.2452 -3.7972 39 1 9.0967 4.1085 -2.1814 40 1 7.7792 3.0230 -2.6874 41 1 7.8656 1.6446 -0.6419 42 1 7.9176 2.4199 0.9595 43 1 10.0747 3.5271 0.2988 44 1 10.0358 2.6126 -1.2278 45 1 9.7716 0.7863 0.9101 46 1 13.9782 -0.6608 1.6681 47 1 3.6806 4.6494 0.0008 48 1 1.2358 4.3872 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753781011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:38 Heat of formation + Delta-G solvation = 15.010281 kcal Electronic energy + Delta-G solvation = -29072.657236 eV Core-core repulsion = 25129.998969 eV Total energy + Delta-G solvation = -3942.658266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48798 -40.35065 -38.24939 -37.54761 -35.47668 -33.79654 -32.89923 -32.32680 -31.26568 -30.71058 -28.32287 -27.67616 -25.88879 -24.65516 -23.89109 -23.58557 -22.09440 -21.18676 -20.78513 -19.87026 -18.37184 -17.68911 -17.37246 -16.67579 -16.39550 -16.21057 -16.05995 -15.48049 -14.83617 -14.74325 -14.65924 -14.51562 -14.22374 -13.92088 -13.68716 -13.58630 -13.41671 -13.19308 -12.89281 -12.82397 -12.56215 -12.26872 -12.01474 -11.69632 -11.57044 -11.47020 -11.16429 -11.06115 -10.87559 -10.77559 -10.50433 -10.38971 -10.23271 -10.14013 -10.02612 -9.49531 -9.02901 -8.87653 -8.79321 -8.67527 -7.10164 -5.67424 -3.01357 0.41671 0.70217 2.41044 2.65521 2.87006 3.38007 3.48964 3.55060 3.56046 3.84231 4.03622 4.42589 4.49913 4.56934 4.64655 4.67219 4.70603 4.76920 4.87661 4.90387 4.94739 5.05819 5.09800 5.23334 5.23710 5.29096 5.34070 5.42775 5.51120 5.61737 5.63843 5.67247 5.69003 5.82745 5.86512 5.91807 5.98595 6.09063 6.13452 6.27644 6.39267 6.54431 6.80611 6.94333 7.01186 7.20959 7.37049 7.99179 8.10039 8.52586 9.33168 10.06450 10.27707 11.51163 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.003203 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.821273 B = 8738.520011 C =10835.301018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.321 3.679 4 C -0.136 4.136 5 C -0.043 4.043 6 C 0.553 3.447 7 O -0.503 6.503 8 N -0.596 5.596 9 C 0.072 3.928 10 C -0.135 4.135 11 C -0.121 4.121 12 C -0.134 4.134 13 C 0.153 3.847 14 H 0.077 0.923 15 C -0.121 4.121 16 C 0.152 3.848 17 N -0.755 5.755 18 C -0.240 4.240 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.937 5.937 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.275 1.275 25 H -0.292 1.292 26 C -0.201 4.201 27 C 0.137 3.863 28 N -0.530 5.530 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.153 0.847 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.022 0.978 44 H 0.024 0.976 45 H 0.363 0.637 46 H 0.258 0.742 47 H 0.160 0.840 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.935 12.108 -7.783 33.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.142 3.858 4 C -0.158 4.158 5 C -0.054 4.054 6 C 0.340 3.660 7 O -0.378 6.378 8 N -0.330 5.330 9 C -0.050 4.050 10 C -0.173 4.173 11 C -0.159 4.159 12 C -0.172 4.172 13 C 0.051 3.949 14 H 0.095 0.905 15 C -0.159 4.159 16 C 0.025 3.975 17 N -0.401 5.401 18 C -0.370 4.370 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.586 5.586 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.218 1.218 26 C -0.222 4.222 27 C -0.018 4.018 28 N -0.255 5.255 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.171 0.829 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.040 0.960 44 H 0.042 0.958 45 H 0.195 0.805 46 H 0.068 0.932 47 H 0.177 0.823 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -30.104 11.343 -7.512 33.036 hybrid contribution -0.043 -0.699 0.510 0.867 sum -30.147 10.643 -7.003 32.729 Atomic orbital electron populations 1.22894 0.76926 1.03196 1.02474 1.86286 1.23114 1.24116 1.87565 1.19676 0.88970 0.84862 0.92248 1.21125 0.92016 0.99008 1.03603 1.20265 0.94373 0.93283 0.97505 1.18174 0.86360 0.81756 0.79715 1.90956 1.62954 1.40790 1.43080 1.48020 1.07354 1.23819 1.53769 1.22739 0.97458 0.91319 0.93513 1.21930 0.97028 1.02391 0.95977 1.21550 0.94508 0.98564 1.01252 1.22078 1.01304 0.98758 0.95100 1.21372 0.76973 1.00086 0.96479 0.90489 1.22313 0.95023 0.95326 1.03262 1.20769 0.90423 0.90791 0.95559 1.42706 1.04347 1.25404 1.67602 1.19077 0.81297 1.06857 1.29792 0.89327 1.24655 0.95401 0.98396 1.00872 1.69707 1.08460 1.31462 1.48971 0.86544 0.80323 0.81937 0.79845 1.21085 1.20070 1.21814 1.22588 0.94923 0.99738 1.04914 1.22396 0.92467 0.93683 0.93276 1.67187 1.41233 0.98929 1.18154 0.92195 0.88434 0.92181 0.82935 0.90782 0.87078 0.90743 0.91493 0.91691 0.91583 0.89591 0.91348 0.91191 0.89217 0.96049 0.95833 0.80455 0.93177 0.82324 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.24 10.47 -18.78 -0.20 -3.44 16 3 C 0.32 3.55 7.49 -17.16 -0.13 3.42 16 4 C -0.14 -1.60 9.64 -38.84 -0.37 -1.97 16 5 C -0.04 -0.48 5.55 -104.68 -0.58 -1.06 16 6 C 0.55 7.44 7.37 -12.18 -0.09 7.35 16 7 O -0.50 -8.85 12.32 5.36 0.07 -8.78 16 8 N -0.60 -6.70 2.97 -166.21 -0.49 -7.20 16 9 C 0.07 0.51 4.98 -3.71 -0.02 0.49 16 10 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 11 C -0.12 -1.00 5.88 -26.69 -0.16 -1.15 16 12 C -0.13 -1.52 4.81 -26.61 -0.13 -1.65 16 13 C 0.15 1.98 3.03 -67.60 -0.20 1.78 16 14 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 15 C -0.12 -2.13 3.28 -26.73 -0.09 -2.22 16 16 C 0.15 3.14 5.73 -4.04 -0.02 3.12 16 17 N -0.76 -19.61 5.41 -59.91 -0.32 -19.93 16 18 C -0.24 -7.21 10.47 -15.06 -0.16 -7.37 16 19 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 21 N -0.94 -30.63 13.97 55.49 0.78 -29.85 16 22 Si 0.88 23.68 27.74 -169.99 -4.71 18.97 16 23 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.27 -7.13 6.52 56.52 0.37 -6.76 16 25 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 26 C -0.20 -1.52 7.56 -39.03 -0.30 -1.82 16 27 C 0.14 0.98 11.17 -17.61 -0.20 0.79 16 28 N -0.53 -5.13 9.18 -13.38 -0.12 -5.25 16 29 H 0.06 0.40 8.10 -51.93 -0.42 -0.03 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.15 1.89 8.03 -52.49 -0.42 1.47 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.65 3.51 -52.54 -0.18 0.47 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.03 6.86 -51.93 -0.36 0.67 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.34 7.13 -51.93 -0.37 0.97 16 42 H 0.09 1.76 6.34 -51.93 -0.33 1.43 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.48 6.84 -51.93 -0.36 0.13 16 45 H 0.36 9.46 5.53 -40.82 -0.23 9.24 16 46 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 47 H 0.16 0.80 5.40 -52.49 -0.28 0.52 16 48 H 0.17 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -36.75 375.27 -8.19 -44.94 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.19 Total: 4.97 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.65 Total: -0.09 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.17 Total: -62.23 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.13 Total: -12.22 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.71 Total: 18.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.75 -8.19 -44.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753781011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.953 kcal (2) G-P(sol) polarization free energy of solvation -36.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds