Wall clock time and date at job start Tue Mar 31 2020 17:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35691 * 117.00150 * 2 1 4 4 C 1.38891 * 119.62284 * 180.25296 * 3 2 1 5 5 C 1.39577 * 118.94378 * 180.27011 * 4 3 2 6 6 C 1.48160 * 120.89129 * 179.75503 * 5 4 3 7 7 O 1.21511 * 119.99796 * 327.06588 * 6 5 4 8 8 N 1.34779 * 120.00196 * 147.06913 * 6 5 4 9 9 C 1.46923 * 120.62746 * 2.10889 * 8 6 5 10 10 C 1.53195 * 108.77582 * 233.63353 * 9 8 6 11 11 C 1.53036 * 109.31247 * 305.36486 * 10 9 8 12 12 C 1.53039 * 109.53855 * 61.36369 * 11 10 9 13 13 C 1.46919 * 120.63327 * 182.13780 * 8 6 5 14 14 H 1.09000 * 109.70168 * 246.22809 * 13 8 6 15 15 C 1.53002 * 109.58644 * 6.57560 * 13 8 6 16 16 C 1.53003 * 109.47212 * 178.13520 * 15 13 8 17 17 N 1.46495 * 109.47009 * 174.89609 * 16 15 13 18 18 C 1.36940 * 119.99911 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00356 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00590 * 180.02562 * 20 18 17 22 22 Si 1.86810 * 119.99752 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46884 * 269.99903 * 22 20 18 24 24 H 1.48495 * 109.47044 * 29.99433 * 22 20 18 25 25 H 1.48503 * 109.47230 * 149.99953 * 22 20 18 26 26 C 1.39968 * 118.21692 * 359.48772 * 5 4 3 27 27 C 1.37978 * 119.13214 * 0.26817 * 26 5 4 28 28 N 1.31911 * 120.97912 * 359.97438 * 27 26 5 29 29 H 1.09002 * 109.46975 * 60.00095 * 1 2 3 30 30 H 1.08993 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46906 * 300.00237 * 1 2 3 32 32 H 1.08000 * 120.53169 * 0.04872 * 4 3 2 33 33 H 1.09006 * 109.58903 * 113.84756 * 9 8 6 34 34 H 1.09000 * 109.70578 * 353.49325 * 9 8 6 35 35 H 1.09006 * 109.49640 * 185.41948 * 10 9 8 36 36 H 1.08993 * 109.52274 * 65.33258 * 10 9 8 37 37 H 1.09004 * 109.45968 * 301.34656 * 11 10 9 38 38 H 1.08995 * 109.46467 * 181.38571 * 11 10 9 39 39 H 1.08999 * 109.50347 * 178.68285 * 12 11 10 40 40 H 1.09004 * 109.49758 * 58.58766 * 12 11 10 41 41 H 1.08997 * 109.46831 * 58.13603 * 15 13 8 42 42 H 1.08996 * 109.47034 * 298.13515 * 15 13 8 43 43 H 1.09005 * 109.46935 * 54.90327 * 16 15 13 44 44 H 1.08994 * 109.47339 * 294.89943 * 16 15 13 45 45 H 0.96999 * 120.00672 * 0.02562 * 17 16 15 46 46 H 0.97002 * 120.00643 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.43255 * 180.25413 * 26 5 4 48 48 H 1.08004 * 119.50758 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4325 1.2725 -0.0053 5 6 4.0515 2.5235 0.0005 6 6 5.5284 2.6415 0.0006 7 8 6.2045 1.8068 0.5685 8 7 6.1219 3.6748 -0.6291 9 6 5.3166 4.7167 -1.2806 10 6 5.7773 4.8588 -2.7348 11 6 7.2850 5.1191 -2.7649 12 6 8.0218 3.9330 -2.1385 13 6 7.5865 3.7803 -0.6777 14 1 7.9114 4.6502 -0.1068 15 6 8.2118 2.5156 -0.0856 16 6 9.7361 2.6081 -0.1799 17 7 10.3379 1.4556 0.4952 18 6 11.7001 1.3226 0.5395 19 1 12.3308 2.0676 0.0771 20 6 12.2704 0.2304 1.1787 21 7 13.5797 0.1027 1.2218 22 14 11.1795 -1.0585 1.9778 23 1 10.9211 -0.6812 3.3906 24 1 9.8913 -1.1406 1.2438 25 1 11.8591 -2.3782 1.9342 26 6 3.2395 3.6636 0.0005 27 6 1.8681 3.5116 0.0004 28 7 1.3179 2.3127 -0.0002 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0231 0.3683 -0.0103 33 1 5.4541 5.6642 -0.7595 34 1 4.2636 4.4361 -1.2567 35 1 5.2546 5.6936 -3.2020 36 1 5.5557 3.9406 -3.2784 37 1 7.5086 6.0245 -2.2005 38 1 7.6113 5.2452 -3.7972 39 1 9.0967 4.1085 -2.1814 40 1 7.7792 3.0230 -2.6874 41 1 7.8656 1.6446 -0.6419 42 1 7.9176 2.4199 0.9595 43 1 10.0747 3.5271 0.2988 44 1 10.0358 2.6126 -1.2278 45 1 9.7716 0.7863 0.9101 46 1 13.9782 -0.6608 1.6681 47 1 3.6806 4.6494 0.0008 48 1 1.2358 4.3872 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753781011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:37 Heat of formation + Delta-G solvation = -12.263614 kcal Electronic energy + Delta-G solvation = -29073.839920 eV Core-core repulsion = 25129.998969 eV Total energy + Delta-G solvation = -3943.840951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31649 -41.19593 -38.99980 -38.49551 -37.18332 -35.04776 -34.06778 -33.40137 -32.72326 -31.73600 -29.59926 -28.35301 -27.00842 -25.47279 -25.29439 -24.31743 -23.64650 -22.27860 -21.96911 -20.69628 -19.76389 -19.09194 -18.36356 -17.41877 -17.21943 -17.08708 -16.94294 -16.67864 -16.36489 -15.86850 -15.72548 -15.39374 -15.24427 -15.06993 -14.90061 -14.69687 -14.42436 -14.37817 -14.16275 -13.98791 -13.76646 -13.30625 -13.06314 -12.90017 -12.79328 -12.68521 -12.37937 -12.20388 -12.13599 -11.94884 -11.87208 -11.80301 -11.51994 -11.43049 -11.05014 -10.99108 -10.92606 -10.16559 -9.63898 -9.56409 -9.32650 -8.07739 -5.40016 -0.37220 0.02122 1.33810 1.34461 1.43447 1.52528 1.77786 2.13470 2.43319 2.64903 3.12959 3.23491 3.31194 3.55495 3.78847 3.84316 3.87295 3.89555 3.98340 4.07906 4.13435 4.23024 4.35109 4.39971 4.42713 4.44944 4.49979 4.58098 4.64337 4.68854 4.71554 4.74236 4.77717 4.87787 4.94577 4.95482 5.09363 5.15981 5.24589 5.25585 5.34649 5.36299 5.49130 5.62189 5.70758 6.13182 6.17565 6.29199 6.69007 7.00821 7.02797 7.81039 7.99520 9.13756 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.003203 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.821273 B = 8738.520011 C =10835.301018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.326 6.326 3 C 0.311 3.689 4 C -0.163 4.163 5 C -0.053 4.053 6 C 0.546 3.454 7 O -0.559 6.559 8 N -0.590 5.590 9 C 0.064 3.936 10 C -0.131 4.131 11 C -0.117 4.117 12 C -0.132 4.132 13 C 0.157 3.843 14 H 0.093 0.907 15 C -0.102 4.102 16 C 0.150 3.850 17 N -0.763 5.763 18 C -0.234 4.234 19 H 0.063 0.937 20 C -0.060 4.060 21 N -0.980 5.980 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.266 1.266 25 H -0.288 1.288 26 C -0.185 4.185 27 C 0.148 3.852 28 N -0.535 5.535 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.362 0.638 46 H 0.259 0.741 47 H 0.194 0.806 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.447 15.004 -8.377 37.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.233 6.233 3 C 0.133 3.867 4 C -0.185 4.185 5 C -0.064 4.064 6 C 0.334 3.666 7 O -0.438 6.438 8 N -0.322 5.322 9 C -0.055 4.055 10 C -0.169 4.169 11 C -0.154 4.154 12 C -0.171 4.171 13 C 0.054 3.946 14 H 0.110 0.890 15 C -0.140 4.140 16 C 0.024 3.976 17 N -0.408 5.408 18 C -0.365 4.365 19 H 0.081 0.919 20 C -0.251 4.251 21 N -0.631 5.631 22 Si 0.778 3.222 23 H -0.204 1.204 24 H -0.191 1.191 25 H -0.214 1.214 26 C -0.204 4.204 27 C -0.008 4.008 28 N -0.260 5.260 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.194 0.806 46 H 0.068 0.932 47 H 0.211 0.789 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -33.672 14.289 -8.149 37.475 hybrid contribution 1.022 -1.473 0.622 1.897 sum -32.650 12.817 -7.527 35.874 Atomic orbital electron populations 1.23110 0.75218 1.04720 1.02728 1.86255 1.24928 1.24488 1.87618 1.19674 0.88678 0.85516 0.92861 1.21030 0.92635 0.98852 1.06005 1.20109 0.93030 0.94292 0.98973 1.18633 0.87434 0.81406 0.79109 1.90922 1.64389 1.42828 1.45707 1.48108 1.06827 1.24161 1.53061 1.23148 0.97612 0.91093 0.93689 1.21940 0.96184 1.03085 0.95736 1.21544 0.95094 0.97219 1.01552 1.22034 1.01252 0.99807 0.93964 1.21225 0.78197 0.97769 0.97386 0.88964 1.22037 0.92656 0.97181 1.02121 1.20976 0.92523 0.89064 0.95076 1.42830 1.02952 1.26938 1.68078 1.19099 0.82886 1.05956 1.28545 0.91913 1.25413 0.96745 1.00820 1.02168 1.69856 1.10293 1.32463 1.50478 0.85477 0.78685 0.79087 0.78964 1.20386 1.19136 1.21400 1.22931 0.94844 0.99788 1.02879 1.23223 0.92851 0.94065 0.90631 1.67302 1.41189 0.99347 1.18126 0.91710 0.86412 0.92014 0.85359 0.87722 0.85419 0.87363 0.92934 0.90131 0.90798 0.90599 0.93156 0.93448 0.91275 0.95378 0.95366 0.80596 0.93183 0.78924 0.77035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.33 -7.04 10.47 -90.10 -0.94 -7.99 16 3 C 0.31 6.80 7.49 84.80 0.63 7.43 16 4 C -0.16 -4.01 9.64 22.75 0.22 -3.79 16 5 C -0.05 -1.13 5.55 -19.90 -0.11 -1.24 16 6 C 0.55 14.72 7.37 86.88 0.64 15.36 16 7 O -0.56 -20.81 12.32 -3.75 -0.05 -20.86 16 8 N -0.59 -12.29 2.97 -798.07 -2.37 -14.66 16 9 C 0.06 0.65 4.98 86.36 0.43 1.08 16 10 C -0.13 -1.29 6.08 30.67 0.19 -1.10 16 11 C -0.12 -1.54 5.88 30.62 0.18 -1.36 16 12 C -0.13 -2.87 4.81 30.67 0.15 -2.72 16 13 C 0.16 3.93 3.03 44.98 0.14 4.06 16 14 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 15 C -0.10 -3.68 3.28 30.60 0.10 -3.58 16 16 C 0.15 6.32 5.73 86.38 0.49 6.82 16 17 N -0.76 -40.46 5.41 -343.45 -1.86 -42.31 16 18 C -0.23 -14.41 10.47 84.03 0.88 -13.53 16 19 H 0.06 4.11 8.06 -2.91 -0.02 4.09 16 20 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 21 N -0.98 -65.57 13.97 21.65 0.30 -65.26 16 22 Si 0.95 50.03 27.74 68.60 1.90 51.94 16 23 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.27 -13.48 6.52 99.48 0.65 -12.83 16 25 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16 26 C -0.18 -2.12 7.56 22.63 0.17 -1.94 16 27 C 0.15 1.50 11.17 84.62 0.94 2.44 16 28 N -0.54 -9.11 9.18 -309.13 -2.84 -11.94 16 29 H 0.06 0.77 8.10 -2.39 -0.02 0.76 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.13 3.62 8.03 -2.91 -0.02 3.60 16 33 H 0.10 0.53 8.14 -2.38 -0.02 0.52 16 34 H 0.13 0.87 3.51 -2.97 -0.01 0.86 16 35 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.78 6.86 -2.39 -0.02 1.76 16 40 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.05 1.91 7.13 -2.39 -0.02 1.89 16 42 H 0.07 2.81 6.34 -2.39 -0.02 2.80 16 43 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.03 1.18 6.84 -2.39 -0.02 1.16 16 45 H 0.36 19.19 5.53 -92.71 -0.51 18.68 16 46 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 47 H 0.19 0.84 5.40 -2.91 -0.02 0.82 16 48 H 0.21 0.15 8.06 -2.91 -0.02 0.13 16 Total: -1.00 -84.89 375.27 1.25 -83.64 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.40 Total: 21.17 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.70 Total: 6.29 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -6.76 Total: -134.18 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.99 Total: -28.84 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.90 Total: 51.94 kcal Total: -84.89 1.25 -83.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753781011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.372 kcal (2) G-P(sol) polarization free energy of solvation -84.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds