Wall clock time and date at job start Tue Mar 31 2020 17:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35677 * 117.00217 * 2 1 4 4 C 1.38895 * 119.62790 * 180.27565 * 3 2 1 5 5 C 1.39566 * 118.94935 * 180.22408 * 4 3 2 6 6 C 1.48168 * 120.89358 * 179.77877 * 5 4 3 7 7 O 1.21514 * 119.99585 * 359.71882 * 6 5 4 8 8 N 1.34769 * 119.99829 * 179.72043 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52996 * 109.46972 * 59.99834 * 11 9 8 13 13 C 1.53001 * 109.47486 * 60.00463 * 12 11 9 14 14 C 1.53002 * 109.46637 * 299.99742 * 13 12 11 15 15 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 16 16 H 1.08996 * 109.47853 * 179.97438 * 15 9 8 17 17 C 1.52999 * 109.47317 * 59.99649 * 15 9 8 18 18 N 1.46492 * 109.47631 * 174.99916 * 17 15 9 19 19 C 1.36938 * 120.00241 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00320 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00002 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99885 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46925 * 90.00103 * 23 21 19 25 25 H 1.48501 * 109.46675 * 209.99959 * 23 21 19 26 26 H 1.48498 * 109.47344 * 329.99965 * 23 21 19 27 27 C 1.39965 * 118.21720 * 359.50526 * 5 4 3 28 28 C 1.37982 * 119.13379 * 0.25118 * 27 5 4 29 29 N 1.31904 * 120.97547 * 0.02562 * 28 27 5 30 30 H 1.08998 * 109.46795 * 300.00485 * 1 2 3 31 31 H 1.08996 * 109.46494 * 60.00194 * 1 2 3 32 32 H 1.08996 * 109.46753 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.52009 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 37 37 H 1.09001 * 109.46993 * 180.02562 * 12 11 9 38 38 H 1.09004 * 109.47298 * 300.00176 * 12 11 9 39 39 H 1.08996 * 109.46778 * 59.99584 * 13 12 11 40 40 H 1.08992 * 109.47514 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46986 * 179.97438 * 14 13 12 42 42 H 1.08993 * 109.47662 * 299.99908 * 14 13 12 43 43 H 1.09001 * 109.47317 * 295.00638 * 17 15 9 44 44 H 1.09006 * 109.47194 * 55.00274 * 17 15 9 45 45 H 0.97006 * 119.99812 * 0.02562 * 18 17 15 46 46 H 0.96999 * 120.00259 * 179.97438 * 22 21 19 47 47 H 1.08006 * 120.43941 * 180.27090 * 27 5 4 48 48 H 1.07999 * 119.51455 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2725 -0.0058 5 6 4.0515 2.5234 -0.0010 6 6 5.5285 2.6415 -0.0019 7 8 6.2179 1.6408 -0.0018 8 7 6.1071 3.8586 -0.0029 9 6 7.5675 3.9753 -0.0044 10 1 7.9974 3.1652 0.5849 11 6 8.0845 3.8901 -1.4419 12 6 7.4812 5.0271 -2.2690 13 6 7.8861 6.3711 -1.6603 14 6 7.3691 6.4563 -0.2228 15 6 7.9724 5.3192 0.6044 16 1 9.0590 5.4060 0.6037 17 6 7.4555 5.4045 2.0419 18 7 7.9436 6.6376 2.6641 19 6 7.6074 6.9308 3.9588 20 1 6.9827 6.2528 4.5214 21 6 8.0695 8.0996 4.5482 22 7 7.7468 8.3811 5.7928 23 14 9.1506 9.2720 3.5755 24 1 8.2974 10.2602 2.8678 25 1 10.0678 9.9833 4.5018 26 1 9.9459 8.5046 2.5837 27 6 3.2396 3.6635 -0.0010 28 6 1.8681 3.5115 -0.0006 29 7 1.3180 2.3127 0.0004 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0231 0.3682 -0.0099 34 1 5.5568 4.6574 -0.0033 35 1 9.1711 3.9765 -1.4430 36 1 7.7961 2.9326 -1.8756 37 1 7.8492 4.9662 -3.2932 38 1 6.3946 4.9403 -2.2679 39 1 8.9726 6.4579 -1.6614 40 1 7.4567 7.1811 -2.2497 41 1 7.6579 7.4136 0.2111 42 1 6.2826 6.3695 -0.2216 43 1 6.3655 5.4070 2.0365 44 1 7.8140 4.5451 2.6085 45 1 8.5050 7.2465 2.1590 46 1 8.0700 9.1976 6.2048 47 1 3.6806 4.6494 -0.0018 48 1 1.2358 4.3870 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754344319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:28 Heat of formation + Delta-G solvation = -32.964183 kcal Electronic energy + Delta-G solvation = -28991.787542 eV Core-core repulsion = 25047.048947 eV Total energy + Delta-G solvation = -3944.738595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16720 -40.23984 -38.54802 -37.78303 -34.89614 -33.95635 -32.85765 -32.01248 -31.10584 -30.15184 -29.71117 -27.63168 -25.67755 -24.68700 -23.61932 -22.86017 -22.22259 -21.29031 -20.69383 -19.16345 -19.04675 -17.67528 -17.54892 -16.65733 -16.32892 -16.15335 -15.69321 -15.47201 -15.01033 -14.67481 -14.56089 -14.39469 -14.16956 -14.08610 -13.93305 -13.60301 -13.45917 -12.99148 -12.82594 -12.49525 -12.35344 -12.20715 -12.00954 -11.85660 -11.67074 -11.52991 -11.14196 -11.03520 -10.85338 -10.56002 -10.41758 -10.30454 -10.20727 -10.10426 -9.98234 -9.87369 -9.60582 -9.08244 -8.91293 -8.85672 -7.26255 -5.79418 -3.15204 0.43919 0.83617 2.61506 2.72720 3.09550 3.33597 3.35538 3.42228 3.57038 3.97899 4.32657 4.55692 4.60466 4.63790 4.71531 4.75285 4.76458 4.79777 4.97176 5.01699 5.04768 5.16509 5.30453 5.38022 5.42170 5.44018 5.47816 5.51485 5.53381 5.59156 5.66043 5.73208 5.75426 5.91985 5.94895 6.01973 6.04282 6.10232 6.18807 6.30686 6.38863 6.43829 6.64726 6.69893 6.88470 7.35883 7.47431 7.96800 8.03373 8.39434 9.18416 9.90478 10.10143 11.39077 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.003025 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.778893 B = 9254.474163 C =10575.204361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.317 3.683 4 C -0.133 4.133 5 C -0.049 4.049 6 C 0.559 3.441 7 O -0.529 6.529 8 N -0.704 5.704 9 C 0.155 3.845 10 H 0.093 0.907 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.107 4.107 16 H 0.087 0.913 17 C 0.164 3.836 18 N -0.754 5.754 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.179 4.179 28 C 0.140 3.860 29 N -0.528 5.528 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.402 0.598 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.143 0.857 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 -11.123 -19.058 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.138 3.862 4 C -0.154 4.154 5 C -0.060 4.060 6 C 0.345 3.655 7 O -0.405 6.405 8 N -0.357 5.357 9 C 0.051 3.949 10 H 0.111 0.889 11 C -0.168 4.168 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.126 4.126 16 H 0.106 0.894 17 C 0.036 3.964 18 N -0.400 5.400 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.200 4.200 28 C -0.016 4.016 29 N -0.252 5.252 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.172 0.828 34 H 0.239 0.761 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.194 0.806 46 H 0.070 0.930 47 H 0.161 0.839 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.654 -12.207 -18.813 24.828 hybrid contribution 1.093 1.605 -0.444 1.992 sum -9.561 -10.602 -19.257 23.972 Atomic orbital electron populations 1.22887 0.76975 1.03087 1.02558 1.86260 1.23077 1.24174 1.87749 1.19681 0.89005 0.84869 0.92665 1.21118 0.91887 0.99143 1.03293 1.20164 0.93968 0.93294 0.98580 1.18028 0.86651 0.83908 0.76917 1.90781 1.64082 1.36402 1.49274 1.46001 1.08262 1.07671 1.73761 1.21010 0.78865 0.98616 0.96423 0.88907 1.21916 1.00812 0.98961 0.95071 1.21495 1.00656 0.94659 0.98579 1.21595 1.01225 0.96886 0.96222 1.21562 0.99881 0.99309 0.94288 1.21702 1.01683 0.93056 0.96173 0.89434 1.20627 0.96593 0.89825 0.89327 1.42708 1.61630 1.22425 1.13226 1.19050 1.26298 1.04562 0.87458 0.89309 1.24677 1.00419 0.98051 0.95998 1.69701 1.49698 1.26582 1.12214 0.86559 0.80920 0.81623 0.79490 1.21073 1.21733 1.20333 1.22204 0.95033 0.99099 1.03670 1.22386 0.92571 0.93644 0.92959 1.67195 1.41267 0.98944 1.17810 0.92120 0.92233 0.88508 0.82798 0.76083 0.90807 0.91496 0.92276 0.92212 0.91869 0.92096 0.90839 0.92345 0.95614 0.95507 0.80626 0.93043 0.83938 0.81539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.32 10.47 -18.73 -0.20 -3.51 16 3 C 0.32 3.68 7.49 -17.16 -0.13 3.55 16 4 C -0.13 -1.58 9.61 -38.84 -0.37 -1.96 16 5 C -0.05 -0.57 5.91 -104.68 -0.62 -1.19 16 6 C 0.56 7.31 7.76 -12.19 -0.09 7.21 16 7 O -0.53 -8.50 16.10 5.35 0.09 -8.42 16 8 N -0.70 -8.11 3.57 -54.65 -0.20 -8.30 16 9 C 0.16 1.90 2.23 -67.93 -0.15 1.75 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 11 C -0.13 -1.36 5.60 -26.73 -0.15 -1.51 16 12 C -0.12 -1.09 5.76 -26.73 -0.15 -1.25 16 13 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 14 C -0.11 -1.38 4.90 -26.73 -0.13 -1.51 16 15 C -0.11 -1.46 2.02 -90.62 -0.18 -1.64 16 16 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 17 C 0.16 2.97 5.42 -4.05 -0.02 2.95 16 18 N -0.75 -17.13 5.13 -59.91 -0.31 -17.43 16 19 C -0.24 -6.79 10.47 -15.06 -0.16 -6.94 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 23 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 27 C -0.18 -1.67 9.61 -39.03 -0.38 -2.05 16 28 C 0.14 1.27 11.17 -17.61 -0.20 1.07 16 29 N -0.53 -5.75 9.18 -13.38 -0.12 -5.88 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.15 1.83 7.74 -52.48 -0.41 1.43 16 34 H 0.40 4.02 4.81 -40.82 -0.20 3.83 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.05 7.18 -51.93 -0.37 0.67 16 42 H 0.06 0.65 6.50 -51.93 -0.34 0.31 16 43 H 0.03 0.47 7.61 -51.93 -0.40 0.07 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.36 7.93 4.71 -40.82 -0.19 7.74 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.14 1.02 6.53 -52.48 -0.34 0.68 16 48 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -33.84 382.70 -8.12 -41.96 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.27 Total: 8.79 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.94 Total: -1.51 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.15 Total: -60.00 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.11 Total: -11.93 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.84 -8.12 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754344319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.994 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds