Wall clock time and date at job start Tue Mar 31 2020 17:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35677 * 117.00217 * 2 1 4 4 C 1.38895 * 119.62790 * 180.27565 * 3 2 1 5 5 C 1.39566 * 118.94935 * 180.22408 * 4 3 2 6 6 C 1.48168 * 120.89358 * 179.77877 * 5 4 3 7 7 O 1.21514 * 119.99585 * 359.71882 * 6 5 4 8 8 N 1.34769 * 119.99829 * 179.72043 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52996 * 109.46972 * 59.99834 * 11 9 8 13 13 C 1.53001 * 109.47486 * 60.00463 * 12 11 9 14 14 C 1.53002 * 109.46637 * 299.99742 * 13 12 11 15 15 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 16 16 H 1.08996 * 109.47853 * 179.97438 * 15 9 8 17 17 C 1.52999 * 109.47317 * 59.99649 * 15 9 8 18 18 N 1.46492 * 109.47631 * 174.99916 * 17 15 9 19 19 C 1.36938 * 120.00241 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00320 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00002 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99885 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46925 * 90.00103 * 23 21 19 25 25 H 1.48501 * 109.46675 * 209.99959 * 23 21 19 26 26 H 1.48498 * 109.47344 * 329.99965 * 23 21 19 27 27 C 1.39965 * 118.21720 * 359.50526 * 5 4 3 28 28 C 1.37982 * 119.13379 * 0.25118 * 27 5 4 29 29 N 1.31904 * 120.97547 * 0.02562 * 28 27 5 30 30 H 1.08998 * 109.46795 * 300.00485 * 1 2 3 31 31 H 1.08996 * 109.46494 * 60.00194 * 1 2 3 32 32 H 1.08996 * 109.46753 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.52009 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 37 37 H 1.09001 * 109.46993 * 180.02562 * 12 11 9 38 38 H 1.09004 * 109.47298 * 300.00176 * 12 11 9 39 39 H 1.08996 * 109.46778 * 59.99584 * 13 12 11 40 40 H 1.08992 * 109.47514 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46986 * 179.97438 * 14 13 12 42 42 H 1.08993 * 109.47662 * 299.99908 * 14 13 12 43 43 H 1.09001 * 109.47317 * 295.00638 * 17 15 9 44 44 H 1.09006 * 109.47194 * 55.00274 * 17 15 9 45 45 H 0.97006 * 119.99812 * 0.02562 * 18 17 15 46 46 H 0.96999 * 120.00259 * 179.97438 * 22 21 19 47 47 H 1.08006 * 120.43941 * 180.27090 * 27 5 4 48 48 H 1.07999 * 119.51455 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2725 -0.0058 5 6 4.0515 2.5234 -0.0010 6 6 5.5285 2.6415 -0.0019 7 8 6.2179 1.6408 -0.0018 8 7 6.1071 3.8586 -0.0029 9 6 7.5675 3.9753 -0.0044 10 1 7.9974 3.1652 0.5849 11 6 8.0845 3.8901 -1.4419 12 6 7.4812 5.0271 -2.2690 13 6 7.8861 6.3711 -1.6603 14 6 7.3691 6.4563 -0.2228 15 6 7.9724 5.3192 0.6044 16 1 9.0590 5.4060 0.6037 17 6 7.4555 5.4045 2.0419 18 7 7.9436 6.6376 2.6641 19 6 7.6074 6.9308 3.9588 20 1 6.9827 6.2528 4.5214 21 6 8.0695 8.0996 4.5482 22 7 7.7468 8.3811 5.7928 23 14 9.1506 9.2720 3.5755 24 1 8.2974 10.2602 2.8678 25 1 10.0678 9.9833 4.5018 26 1 9.9459 8.5046 2.5837 27 6 3.2396 3.6635 -0.0010 28 6 1.8681 3.5115 -0.0006 29 7 1.3180 2.3127 0.0004 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0231 0.3682 -0.0099 34 1 5.5568 4.6574 -0.0033 35 1 9.1711 3.9765 -1.4430 36 1 7.7961 2.9326 -1.8756 37 1 7.8492 4.9662 -3.2932 38 1 6.3946 4.9403 -2.2679 39 1 8.9726 6.4579 -1.6614 40 1 7.4567 7.1811 -2.2497 41 1 7.6579 7.4136 0.2111 42 1 6.2826 6.3695 -0.2216 43 1 6.3655 5.4070 2.0365 44 1 7.8140 4.5451 2.6085 45 1 8.5050 7.2465 2.1590 46 1 8.0700 9.1976 6.2048 47 1 3.6806 4.6494 -0.0018 48 1 1.2358 4.3870 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754344319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:27 Heat of formation + Delta-G solvation = -56.810467 kcal Electronic energy + Delta-G solvation = -28992.821595 eV Core-core repulsion = 25047.048947 eV Total energy + Delta-G solvation = -3945.772648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.05301 -41.18640 -39.52438 -38.66534 -36.61500 -34.94311 -33.87066 -33.69532 -31.91425 -31.61583 -30.71615 -28.29599 -27.17127 -25.63152 -24.42379 -24.38492 -23.30969 -22.28915 -21.95573 -20.17586 -20.01520 -19.54276 -18.38324 -17.53053 -17.10930 -17.06347 -16.76950 -16.52460 -16.40300 -16.03244 -15.61019 -15.49246 -15.15970 -15.11351 -14.89999 -14.84134 -14.63225 -14.32991 -14.15463 -13.80392 -13.24593 -13.15326 -13.04247 -12.94067 -12.73284 -12.69184 -12.57636 -12.22635 -12.11749 -11.93043 -11.84345 -11.48123 -11.37076 -11.21464 -11.10313 -11.03833 -10.88954 -10.75929 -10.08968 -9.64116 -9.28913 -8.02088 -5.35970 -0.44106 0.04352 1.38507 1.42931 1.50315 1.74429 1.79033 2.22304 2.49357 2.72463 3.24571 3.29238 3.39572 3.49657 3.75190 3.81764 3.85683 3.92915 3.95170 4.03783 4.22548 4.30993 4.41776 4.43632 4.45378 4.48036 4.56790 4.60023 4.64612 4.71389 4.73281 4.76655 4.89784 4.93537 5.01816 5.07940 5.16355 5.23000 5.26720 5.29983 5.32876 5.42294 5.49093 5.58842 5.75749 6.12732 6.21467 6.39144 6.68050 7.04022 7.08805 7.83872 8.04700 9.19696 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.003025 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.778893 B = 9254.474163 C =10575.204361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.307 3.693 4 C -0.151 4.151 5 C -0.060 4.060 6 C 0.559 3.441 7 O -0.566 6.566 8 N -0.694 5.694 9 C 0.160 3.840 10 H 0.071 0.929 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.114 4.114 14 C -0.113 4.113 15 C -0.093 4.093 16 H 0.089 0.911 17 C 0.162 3.838 18 N -0.752 5.752 19 C -0.235 4.235 20 H 0.050 0.950 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.957 3.043 24 H -0.272 1.272 25 H -0.299 1.299 26 H -0.249 1.249 27 C -0.171 4.171 28 C 0.143 3.857 29 N -0.534 5.534 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.411 0.589 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.007 0.993 45 H 0.368 0.632 46 H 0.258 0.742 47 H 0.168 0.832 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 -9.638 -21.971 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.128 3.872 4 C -0.172 4.172 5 C -0.071 4.071 6 C 0.346 3.654 7 O -0.445 6.445 8 N -0.347 5.347 9 C 0.055 3.945 10 H 0.089 0.911 11 C -0.161 4.161 12 C -0.148 4.148 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.112 4.112 16 H 0.107 0.893 17 C 0.035 3.965 18 N -0.398 5.398 19 C -0.366 4.366 20 H 0.069 0.931 21 C -0.256 4.256 22 N -0.636 5.636 23 Si 0.784 3.216 24 H -0.198 1.198 25 H -0.226 1.226 26 H -0.173 1.173 27 C -0.192 4.192 28 C -0.013 4.013 29 N -0.259 5.259 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.161 0.839 34 H 0.250 0.750 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.025 0.975 45 H 0.202 0.798 46 H 0.067 0.933 47 H 0.185 0.815 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.897 -10.743 -21.778 26.616 hybrid contribution 1.059 1.054 0.534 1.587 sum -9.838 -9.689 -21.243 25.336 Atomic orbital electron populations 1.23113 0.75334 1.04825 1.02569 1.86241 1.24780 1.24114 1.87683 1.19753 0.88952 0.85433 0.93022 1.21108 0.92329 0.99151 1.04653 1.20109 0.93160 0.94083 0.99747 1.18271 0.87273 0.83677 0.76174 1.90760 1.65034 1.37626 1.51128 1.45913 1.08122 1.07654 1.73010 1.20905 0.79198 0.96951 0.97471 0.91087 1.21859 1.01414 0.99294 0.93555 1.21472 1.00882 0.93520 0.98976 1.21544 1.01437 0.97651 0.94547 1.21570 1.00650 0.97383 0.95420 1.21547 1.01739 0.94613 0.93306 0.89264 1.20759 0.96738 0.87170 0.91798 1.42646 1.61704 1.23919 1.11565 1.18997 1.24827 1.03562 0.89197 0.93147 1.25551 1.02636 1.00302 0.97131 1.69899 1.51796 1.27406 1.14544 0.85384 0.78902 0.79124 0.78229 1.19797 1.22636 1.17349 1.22479 0.95090 0.99309 1.02297 1.23033 0.92951 0.94064 0.91237 1.67282 1.41378 0.99335 1.17899 0.92316 0.91910 0.86013 0.83926 0.74979 0.89923 0.92363 0.90726 0.91773 0.91601 0.90516 0.92398 0.91166 0.95222 0.97476 0.79775 0.93342 0.81453 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.69 16 2 O -0.32 -6.98 10.47 -89.95 -0.94 -7.93 16 3 C 0.31 7.11 7.49 84.80 0.63 7.75 16 4 C -0.15 -3.70 9.61 22.75 0.22 -3.48 16 5 C -0.06 -1.37 5.91 -19.90 -0.12 -1.49 16 6 C 0.56 14.58 7.76 86.88 0.67 15.26 16 7 O -0.57 -18.79 16.10 -3.76 -0.06 -18.86 16 8 N -0.69 -15.17 3.57 -445.10 -1.59 -16.76 16 9 C 0.16 3.73 2.23 44.99 0.10 3.83 16 10 H 0.07 2.00 7.58 -2.39 -0.02 1.99 16 11 C -0.12 -2.34 5.60 30.59 0.17 -2.17 16 12 C -0.11 -1.69 5.76 30.59 0.18 -1.51 16 13 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 14 C -0.11 -2.40 4.90 30.60 0.15 -2.25 16 15 C -0.09 -2.37 2.02 -10.79 -0.02 -2.39 16 16 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 17 C 0.16 5.79 5.42 86.38 0.47 6.26 16 18 N -0.75 -33.52 5.13 -343.46 -1.76 -35.28 16 19 C -0.23 -13.24 10.47 84.03 0.88 -12.36 16 20 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 21 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 22 N -0.99 -62.98 13.97 21.65 0.30 -62.68 16 23 Si 0.96 44.09 27.74 68.60 1.90 46.00 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 27 C -0.17 -2.84 9.61 22.63 0.22 -2.62 16 28 C 0.14 2.24 11.17 84.62 0.94 3.18 16 29 N -0.53 -10.95 9.18 -309.14 -2.84 -13.79 16 30 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.14 3.69 7.74 -2.91 -0.02 3.67 16 34 H 0.41 7.29 4.81 -92.71 -0.45 6.85 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.94 7.60 -2.38 -0.02 0.92 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.46 7.18 -2.39 -0.02 1.44 16 42 H 0.07 1.32 6.50 -2.39 -0.02 1.31 16 43 H 0.03 1.05 7.61 -2.39 -0.02 1.03 16 44 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 45 H 0.37 15.35 4.71 -92.70 -0.44 14.91 16 46 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.17 1.84 6.53 -2.91 -0.02 1.82 16 48 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -75.76 382.70 1.37 -74.39 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.04 Total: 30.19 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.32 Total: 4.73 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.89 Total: -128.52 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.00 Total: -26.78 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 46.00 kcal Total: -75.76 1.37 -74.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754344319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.577 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds