Wall clock time and date at job start Tue Mar 31 2020 17:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35683 * 117.00259 * 2 1 4 4 C 1.38891 * 119.62053 * 180.27712 * 3 2 1 5 5 C 1.39578 * 118.94378 * 180.22710 * 4 3 2 6 6 C 1.48166 * 120.89440 * 179.78209 * 5 4 3 7 7 O 1.21510 * 119.99455 * 359.71912 * 6 5 4 8 8 N 1.34767 * 120.00027 * 179.72380 * 6 5 4 9 9 C 1.46506 * 120.00003 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47073 * 34.99607 * 9 8 6 11 11 C 1.53002 * 109.47035 * 274.99925 * 9 8 6 12 12 C 1.52996 * 109.46969 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47131 * 60.00062 * 12 11 9 14 14 C 1.53002 * 109.47143 * 299.99831 * 13 12 11 15 15 C 1.52996 * 109.46969 * 60.00070 * 14 13 12 16 16 H 1.08996 * 109.47452 * 59.99938 * 15 14 13 17 17 C 1.53002 * 109.46972 * 180.02562 * 15 14 13 18 18 N 1.46503 * 109.46849 * 294.99846 * 17 15 14 19 19 C 1.36938 * 119.99947 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00320 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99664 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99610 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47462 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46966 * 120.00247 * 23 21 19 26 26 H 1.48501 * 109.46772 * 239.99654 * 23 21 19 27 27 C 1.39967 * 118.21473 * 359.51076 * 5 4 3 28 28 C 1.37977 * 119.13524 * 0.24797 * 27 5 4 29 29 N 1.31906 * 120.97564 * 0.02562 * 28 27 5 30 30 H 1.08999 * 109.47498 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46680 * 299.99893 * 1 2 3 32 32 H 1.08999 * 109.47212 * 59.99530 * 1 2 3 33 33 H 1.08001 * 120.53177 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00319 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46930 * 299.99770 * 11 9 8 36 36 H 1.09004 * 109.47059 * 59.99372 * 11 9 8 37 37 H 1.09001 * 109.46997 * 179.97438 * 12 11 9 38 38 H 1.08992 * 109.47534 * 299.99582 * 12 11 9 39 39 H 1.09004 * 109.47261 * 59.99694 * 13 12 11 40 40 H 1.09002 * 109.47153 * 179.97438 * 13 12 11 41 41 H 1.09004 * 109.47059 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.46930 * 300.00065 * 14 13 12 43 43 H 1.08997 * 109.47298 * 54.99400 * 17 15 14 44 44 H 1.08997 * 109.47047 * 175.00058 * 17 15 14 45 45 H 0.97000 * 120.00112 * 359.97438 * 18 17 15 46 46 H 0.96999 * 119.99407 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.43138 * 180.27193 * 27 5 4 48 48 H 1.08002 * 119.51388 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0058 5 6 4.0515 2.5234 -0.0009 6 6 5.5285 2.6414 -0.0020 7 8 6.2178 1.6407 -0.0020 8 7 6.1072 3.8584 -0.0028 9 6 7.5676 3.9751 -0.0044 10 1 7.9962 3.1647 -0.5942 11 6 8.0876 3.8906 1.4321 12 6 9.6128 4.0118 1.4303 13 6 10.0169 5.3552 0.8198 14 6 9.4969 5.4397 -0.6167 15 6 7.9718 5.3185 -0.6149 16 1 7.5435 6.1290 -0.0252 17 6 7.4519 5.4024 -2.0514 18 7 7.7343 6.7328 -2.5961 19 6 7.3586 7.0426 -3.8759 20 1 6.8536 6.3064 -4.4837 21 6 7.6267 8.3030 -4.3922 22 7 8.2416 9.2003 -3.6513 23 14 7.1134 8.7257 -6.1378 24 1 6.4437 7.5528 -6.7547 25 1 6.1745 9.8761 -6.1128 26 1 8.3147 9.0845 -6.9337 27 6 3.2396 3.6634 -0.0008 28 6 1.8682 3.5115 -0.0003 29 7 1.3180 2.3127 0.0006 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.0231 0.3681 -0.0108 34 1 5.5570 4.6572 -0.0031 35 1 7.6590 4.7010 2.0218 36 1 7.8000 2.9333 1.8669 37 1 9.9832 3.9521 2.4537 38 1 10.0410 3.2013 0.8407 39 1 9.5886 6.1659 1.4095 40 1 11.1035 5.4418 0.8190 41 1 9.7853 6.3967 -1.0518 42 1 9.9252 4.6291 -1.2063 43 1 7.9472 4.6473 -2.6618 44 1 6.3761 5.2275 -2.0592 45 1 8.1875 7.3942 -2.0501 46 1 8.4286 10.0812 -4.0119 47 1 3.6808 4.6492 -0.0015 48 1 1.2359 4.3870 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754344321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:34 Heat of formation + Delta-G solvation = -40.426905 kcal Electronic energy + Delta-G solvation = -28622.195379 eV Core-core repulsion = 24677.133176 eV Total energy + Delta-G solvation = -3945.062203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10402 -40.01944 -38.46429 -37.75991 -34.65542 -34.32786 -32.87307 -31.92605 -31.07425 -29.69810 -29.22658 -27.61396 -25.42899 -24.62150 -23.59606 -23.05394 -22.11766 -20.72427 -20.58559 -19.95494 -18.68362 -17.54102 -17.28290 -16.65159 -16.31347 -16.05859 -15.83600 -15.16618 -14.84807 -14.69204 -14.41931 -14.33122 -14.17585 -13.86808 -13.78861 -13.61347 -13.27821 -13.06557 -12.73464 -12.48091 -12.44926 -12.02703 -11.85722 -11.57711 -11.51776 -11.14956 -10.92248 -10.90304 -10.75277 -10.56282 -10.29071 -10.19856 -10.18846 -10.11562 -9.97732 -9.80038 -9.66887 -9.00972 -8.87924 -8.83788 -6.94406 -5.79657 -3.07874 0.46010 0.85745 2.63195 2.75073 3.11788 3.41215 3.47687 3.49409 3.59200 3.99745 4.35240 4.54357 4.66916 4.72923 4.77687 4.82630 4.89550 4.97655 5.02183 5.02843 5.22053 5.31082 5.32495 5.40582 5.50282 5.54185 5.57284 5.60027 5.64087 5.70957 5.77241 5.86283 5.97827 6.06808 6.11067 6.16697 6.22115 6.26045 6.35696 6.46153 6.53637 6.65833 6.74655 6.86930 6.89872 7.40827 7.49298 7.68654 8.06844 8.39519 9.51078 10.08311 10.43228 11.43234 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.003182 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.789261 B = 8796.851960 C =11283.642752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.316 3.684 4 C -0.133 4.133 5 C -0.050 4.050 6 C 0.559 3.441 7 O -0.529 6.529 8 N -0.708 5.708 9 C 0.153 3.847 10 H 0.090 0.910 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.107 4.107 15 C -0.100 4.100 16 H 0.076 0.924 17 C 0.158 3.842 18 N -0.730 5.730 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.178 4.178 28 C 0.139 3.861 29 N -0.528 5.528 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.154 0.846 34 H 0.403 0.597 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.145 0.855 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 -13.499 13.455 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.137 3.863 4 C -0.155 4.155 5 C -0.061 4.061 6 C 0.345 3.655 7 O -0.406 6.406 8 N -0.358 5.358 9 C 0.049 3.951 10 H 0.109 0.891 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.145 4.145 15 C -0.119 4.119 16 H 0.094 0.906 17 C 0.030 3.970 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.199 4.199 28 C -0.016 4.016 29 N -0.252 5.252 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.172 0.828 34 H 0.239 0.761 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.163 0.837 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.936 -14.586 13.275 22.084 hybrid contribution 0.145 1.202 -0.882 1.498 sum -9.791 -13.384 12.393 20.703 Atomic orbital electron populations 1.22882 0.77012 1.03057 1.02547 1.86258 1.23047 1.24194 1.87792 1.19674 0.89000 0.84864 0.92780 1.21117 0.91877 0.99141 1.03328 1.20182 0.93986 0.93301 0.98583 1.18026 0.86636 0.83912 0.76937 1.90777 1.64106 1.36396 1.49349 1.45997 1.08420 1.07715 1.73710 1.21096 0.78196 0.99229 0.96563 0.89146 1.21900 0.96206 1.02010 0.96381 1.21484 0.94938 0.98169 1.00680 1.21604 1.00496 0.97013 0.96816 1.21495 0.93696 1.03464 0.95840 1.21602 0.97045 0.95294 0.97984 0.90601 1.20671 0.96669 0.89317 0.90314 1.42365 1.71133 1.09943 1.14049 1.19260 1.30892 0.96782 0.89949 0.91267 1.24721 1.01440 0.96499 0.98290 1.69661 1.47032 1.05378 1.36132 0.86141 0.77725 0.77926 0.84565 1.20585 1.21873 1.21872 1.22237 0.95013 0.99218 1.03418 1.22393 0.92602 0.93623 0.93004 1.67190 1.41278 0.98953 1.17821 0.88529 0.92233 0.92154 0.82822 0.76098 0.91794 0.91735 0.92096 0.91833 0.91997 0.92036 0.90142 0.91979 0.96334 0.96432 0.78203 0.93581 0.83729 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.37 10.47 -18.75 -0.20 -3.56 16 3 C 0.32 3.74 7.49 -17.16 -0.13 3.61 16 4 C -0.13 -1.62 9.61 -38.84 -0.37 -2.00 16 5 C -0.05 -0.59 5.91 -104.67 -0.62 -1.21 16 6 C 0.56 7.63 7.76 -12.19 -0.09 7.54 16 7 O -0.53 -8.80 16.10 5.36 0.09 -8.72 16 8 N -0.71 -8.73 4.26 -54.65 -0.23 -8.97 16 9 C 0.15 2.03 1.90 -67.93 -0.13 1.90 16 10 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 11 C -0.13 -1.47 5.49 -26.73 -0.15 -1.62 16 12 C -0.11 -1.26 5.92 -26.73 -0.16 -1.41 16 13 C -0.12 -1.45 5.92 -26.73 -0.16 -1.60 16 14 C -0.11 -1.57 5.08 -26.73 -0.14 -1.70 16 15 C -0.10 -1.48 1.80 -90.62 -0.16 -1.65 16 16 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 17 C 0.16 3.03 5.56 -4.04 -0.02 3.01 16 18 N -0.73 -17.66 5.33 -59.91 -0.32 -17.98 16 19 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 23 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 C -0.18 -1.73 9.61 -39.03 -0.38 -2.11 16 28 C 0.14 1.30 11.17 -17.62 -0.20 1.11 16 29 N -0.53 -5.89 9.18 -13.38 -0.12 -6.01 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.15 1.87 7.74 -52.49 -0.41 1.46 16 34 H 0.40 4.30 6.53 -40.82 -0.27 4.03 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.02 0.34 7.30 -51.93 -0.38 -0.04 16 45 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.15 1.11 6.53 -52.49 -0.34 0.77 16 48 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -32.67 389.92 -8.59 -41.25 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.48 Total: 9.74 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.90 Total: -1.92 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.05 Total: -59.82 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.11 Total: -12.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.67 -8.59 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754344321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.825 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds