Wall clock time and date at job start Tue Mar 31 2020 17:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35683 * 117.00259 * 2 1 4 4 C 1.38891 * 119.62053 * 180.27712 * 3 2 1 5 5 C 1.39578 * 118.94378 * 180.22710 * 4 3 2 6 6 C 1.48166 * 120.89440 * 179.78209 * 5 4 3 7 7 O 1.21510 * 119.99455 * 359.71912 * 6 5 4 8 8 N 1.34767 * 120.00027 * 179.72380 * 6 5 4 9 9 C 1.46506 * 120.00003 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47073 * 34.99607 * 9 8 6 11 11 C 1.53002 * 109.47035 * 274.99925 * 9 8 6 12 12 C 1.52996 * 109.46969 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47131 * 60.00062 * 12 11 9 14 14 C 1.53002 * 109.47143 * 299.99831 * 13 12 11 15 15 C 1.52996 * 109.46969 * 60.00070 * 14 13 12 16 16 H 1.08996 * 109.47452 * 59.99938 * 15 14 13 17 17 C 1.53002 * 109.46972 * 180.02562 * 15 14 13 18 18 N 1.46503 * 109.46849 * 294.99846 * 17 15 14 19 19 C 1.36938 * 119.99947 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00320 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99664 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99610 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47462 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46966 * 120.00247 * 23 21 19 26 26 H 1.48501 * 109.46772 * 239.99654 * 23 21 19 27 27 C 1.39967 * 118.21473 * 359.51076 * 5 4 3 28 28 C 1.37977 * 119.13524 * 0.24797 * 27 5 4 29 29 N 1.31906 * 120.97564 * 0.02562 * 28 27 5 30 30 H 1.08999 * 109.47498 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46680 * 299.99893 * 1 2 3 32 32 H 1.08999 * 109.47212 * 59.99530 * 1 2 3 33 33 H 1.08001 * 120.53177 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00319 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46930 * 299.99770 * 11 9 8 36 36 H 1.09004 * 109.47059 * 59.99372 * 11 9 8 37 37 H 1.09001 * 109.46997 * 179.97438 * 12 11 9 38 38 H 1.08992 * 109.47534 * 299.99582 * 12 11 9 39 39 H 1.09004 * 109.47261 * 59.99694 * 13 12 11 40 40 H 1.09002 * 109.47153 * 179.97438 * 13 12 11 41 41 H 1.09004 * 109.47059 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.46930 * 300.00065 * 14 13 12 43 43 H 1.08997 * 109.47298 * 54.99400 * 17 15 14 44 44 H 1.08997 * 109.47047 * 175.00058 * 17 15 14 45 45 H 0.97000 * 120.00112 * 359.97438 * 18 17 15 46 46 H 0.96999 * 119.99407 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.43138 * 180.27193 * 27 5 4 48 48 H 1.08002 * 119.51388 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0058 5 6 4.0515 2.5234 -0.0009 6 6 5.5285 2.6414 -0.0020 7 8 6.2178 1.6407 -0.0020 8 7 6.1072 3.8584 -0.0028 9 6 7.5676 3.9751 -0.0044 10 1 7.9962 3.1647 -0.5942 11 6 8.0876 3.8906 1.4321 12 6 9.6128 4.0118 1.4303 13 6 10.0169 5.3552 0.8198 14 6 9.4969 5.4397 -0.6167 15 6 7.9718 5.3185 -0.6149 16 1 7.5435 6.1290 -0.0252 17 6 7.4519 5.4024 -2.0514 18 7 7.7343 6.7328 -2.5961 19 6 7.3586 7.0426 -3.8759 20 1 6.8536 6.3064 -4.4837 21 6 7.6267 8.3030 -4.3922 22 7 8.2416 9.2003 -3.6513 23 14 7.1134 8.7257 -6.1378 24 1 6.4437 7.5528 -6.7547 25 1 6.1745 9.8761 -6.1128 26 1 8.3147 9.0845 -6.9337 27 6 3.2396 3.6634 -0.0008 28 6 1.8682 3.5115 -0.0003 29 7 1.3180 2.3127 0.0006 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.0231 0.3681 -0.0108 34 1 5.5570 4.6572 -0.0031 35 1 7.6590 4.7010 2.0218 36 1 7.8000 2.9333 1.8669 37 1 9.9832 3.9521 2.4537 38 1 10.0410 3.2013 0.8407 39 1 9.5886 6.1659 1.4095 40 1 11.1035 5.4418 0.8190 41 1 9.7853 6.3967 -1.0518 42 1 9.9252 4.6291 -1.2063 43 1 7.9472 4.6473 -2.6618 44 1 6.3761 5.2275 -2.0592 45 1 8.1875 7.3942 -2.0501 46 1 8.4286 10.0812 -4.0119 47 1 3.6808 4.6492 -0.0015 48 1 1.2359 4.3870 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754344321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:33 Heat of formation + Delta-G solvation = -62.817479 kcal Electronic energy + Delta-G solvation = -28623.166307 eV Core-core repulsion = 24677.133176 eV Total energy + Delta-G solvation = -3946.033131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00132 -41.04899 -39.51551 -38.67126 -36.42010 -35.41250 -33.79355 -33.65157 -31.89432 -31.21480 -30.37837 -28.28737 -27.02508 -25.63749 -24.72604 -24.41332 -23.21949 -22.00463 -21.66301 -20.98386 -19.73733 -19.11576 -18.39974 -17.68518 -17.09077 -17.03853 -16.78275 -16.72242 -16.12686 -15.90422 -15.53606 -15.32085 -15.24278 -15.09200 -14.90269 -14.82154 -14.61260 -14.36377 -14.05028 -13.67027 -13.34310 -13.20058 -12.96052 -12.77338 -12.68813 -12.66182 -12.23479 -12.20060 -12.07288 -11.91971 -11.85400 -11.64729 -11.39260 -11.23448 -11.14020 -11.07178 -10.92260 -10.73295 -10.08513 -9.64027 -8.97350 -7.94598 -5.22172 -0.44572 0.04483 1.47353 1.48453 1.57837 1.73327 1.77352 2.20982 2.55971 2.72228 3.24342 3.39177 3.42817 3.56585 3.77580 3.85017 3.91966 3.94547 4.04913 4.10940 4.26091 4.38955 4.41940 4.43754 4.45727 4.49922 4.52683 4.57510 4.60807 4.71048 4.76469 4.85976 4.89106 4.94481 5.04885 5.12587 5.14645 5.22222 5.25370 5.30302 5.32134 5.43449 5.47182 5.50746 5.60387 6.12738 6.28155 6.39007 6.67905 7.02765 7.35577 8.10641 8.35513 9.28728 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.003182 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.789261 B = 8796.851960 C =11283.642752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.307 3.693 4 C -0.150 4.150 5 C -0.060 4.060 6 C 0.560 3.440 7 O -0.565 6.565 8 N -0.700 5.700 9 C 0.161 3.839 10 H 0.070 0.930 11 C -0.119 4.119 12 C -0.111 4.111 13 C -0.114 4.114 14 C -0.106 4.106 15 C -0.085 4.085 16 H 0.084 0.916 17 C 0.159 3.841 18 N -0.738 5.738 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.070 4.070 22 N -0.965 5.965 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.290 1.290 26 H -0.295 1.295 27 C -0.171 4.171 28 C 0.142 3.858 29 N -0.534 5.534 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.144 0.856 34 H 0.413 0.587 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.004 0.996 44 H 0.025 0.975 45 H 0.377 0.623 46 H 0.251 0.749 47 H 0.168 0.832 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -13.188 14.315 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.128 3.872 4 C -0.171 4.171 5 C -0.071 4.071 6 C 0.347 3.653 7 O -0.445 6.445 8 N -0.351 5.351 9 C 0.056 3.944 10 H 0.088 0.912 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.104 4.104 16 H 0.102 0.898 17 C 0.032 3.968 18 N -0.381 5.381 19 C -0.374 4.374 20 H 0.087 0.913 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.217 1.217 26 H -0.222 1.222 27 C -0.191 4.191 28 C -0.013 4.013 29 N -0.258 5.258 30 H 0.140 0.860 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.162 0.838 34 H 0.251 0.749 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.022 0.978 44 H 0.043 0.957 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.186 0.814 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.209 -14.300 14.144 23.026 hybrid contribution 0.488 1.063 -1.159 1.647 sum -10.721 -13.237 12.985 21.419 Atomic orbital electron populations 1.23114 0.75340 1.04830 1.02565 1.86241 1.24771 1.24067 1.87697 1.19744 0.88934 0.85436 0.93060 1.21107 0.92336 0.99104 1.04587 1.20096 0.93034 0.94127 0.99856 1.18278 0.87331 0.83577 0.76130 1.90756 1.65061 1.37552 1.51118 1.45915 1.08164 1.07876 1.73106 1.20943 0.78735 0.97206 0.97513 0.91172 1.21843 0.96753 1.02324 0.94828 1.21472 0.94326 0.97273 1.01799 1.21544 1.01082 0.97901 0.94608 1.21441 0.93564 1.01530 0.97843 1.21435 0.97159 0.96524 0.95261 0.89785 1.20783 0.96962 0.86511 0.92553 1.42503 1.70878 1.11488 1.13254 1.19583 1.29943 0.96717 0.91185 0.91293 1.25461 1.02240 0.96659 1.01933 1.69796 1.48553 1.05552 1.37690 0.85161 0.77077 0.77749 0.80302 1.19503 1.21746 1.22234 1.22496 0.95114 0.99366 1.02143 1.23022 0.92921 0.94065 0.91290 1.67280 1.41370 0.99321 1.17878 0.85988 0.91970 0.92279 0.83848 0.74917 0.90307 0.92181 0.89893 0.92292 0.91216 0.91057 0.92934 0.92765 0.97846 0.95688 0.79009 0.93978 0.81448 0.78035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.68 16 2 O -0.32 -6.96 10.47 -90.01 -0.94 -7.91 16 3 C 0.31 7.15 7.49 84.80 0.63 7.78 16 4 C -0.15 -3.70 9.61 22.75 0.22 -3.48 16 5 C -0.06 -1.41 5.91 -19.90 -0.12 -1.52 16 6 C 0.56 15.14 7.76 86.88 0.67 15.81 16 7 O -0.57 -19.18 16.10 -3.75 -0.06 -19.24 16 8 N -0.70 -16.50 4.26 -445.10 -1.90 -18.40 16 9 C 0.16 4.12 1.90 44.99 0.09 4.21 16 10 H 0.07 2.13 7.58 -2.38 -0.02 2.11 16 11 C -0.12 -2.54 5.49 30.59 0.17 -2.38 16 12 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 13 C -0.11 -2.51 5.92 30.59 0.18 -2.32 16 14 C -0.11 -3.07 5.08 30.59 0.16 -2.92 16 15 C -0.08 -2.45 1.80 -10.79 -0.02 -2.47 16 16 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 17 C 0.16 6.06 5.56 86.38 0.48 6.54 16 18 N -0.74 -35.86 5.33 -343.44 -1.83 -37.69 16 19 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 20 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.97 -57.45 13.06 21.65 0.28 -57.17 16 23 Si 0.97 45.54 29.55 68.60 2.03 47.56 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 C -0.17 -2.96 9.61 22.63 0.22 -2.74 16 28 C 0.14 2.31 11.17 84.62 0.94 3.26 16 29 N -0.53 -11.08 9.18 -309.15 -2.84 -13.92 16 30 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16 32 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.14 3.72 7.74 -2.91 -0.02 3.70 16 34 H 0.41 8.00 6.53 -92.71 -0.61 7.39 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.83 7.18 -2.39 -0.02 1.81 16 42 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.03 0.93 7.30 -2.39 -0.02 0.92 16 45 H 0.38 19.25 6.85 -92.71 -0.64 18.62 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.17 2.05 6.53 -2.91 -0.02 2.03 16 48 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -70.79 389.92 0.76 -70.03 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.26 Total: 33.21 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.29 Total: 3.52 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.28 Total: -127.18 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.00 Total: -27.14 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.79 0.76 -70.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754344321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.208 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds