Wall clock time and date at job start Tue Mar 31 2020 17:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35679 * 117.00487 * 2 1 4 4 C 1.38896 * 119.62785 * 179.97438 * 3 2 1 5 5 C 1.39571 * 118.95011 * 179.97438 * 4 3 2 6 6 C 1.48158 * 120.89233 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00127 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00006 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47050 * 34.99305 * 9 8 6 11 11 C 1.53001 * 109.46790 * 274.99374 * 9 8 6 12 12 C 1.53001 * 109.47286 * 300.00111 * 11 9 8 13 13 C 1.53003 * 109.47095 * 300.00374 * 12 11 9 14 14 C 1.53001 * 109.47360 * 59.99671 * 13 12 11 15 15 C 1.52996 * 109.46982 * 300.00309 * 14 13 12 16 16 H 1.08999 * 109.47389 * 299.99528 * 15 14 13 17 17 C 1.53001 * 109.46982 * 179.97438 * 15 14 13 18 18 N 1.46499 * 109.47103 * 64.99768 * 17 15 14 19 19 C 1.36946 * 119.99687 * 180.02562 * 18 17 15 20 20 H 1.07992 * 120.00200 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99422 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00088 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47515 * 89.99903 * 23 21 19 25 25 H 1.48502 * 109.46796 * 210.00210 * 23 21 19 26 26 H 1.48507 * 109.47063 * 329.99515 * 23 21 19 27 27 C 1.39961 * 118.21607 * 0.02562 * 5 4 3 28 28 C 1.37985 * 119.13401 * 359.97438 * 27 5 4 29 29 N 1.31899 * 120.97771 * 0.02562 * 28 27 5 30 30 H 1.08999 * 109.46982 * 59.99995 * 1 2 3 31 31 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46567 * 300.00223 * 1 2 3 33 33 H 1.08004 * 120.52345 * 0.02562 * 4 3 2 34 34 H 0.96996 * 119.99973 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46993 * 60.00120 * 11 9 8 36 36 H 1.08999 * 109.47197 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.47174 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.47018 * 59.99871 * 12 11 9 39 39 H 1.08999 * 109.46777 * 299.99645 * 13 12 11 40 40 H 1.09002 * 109.46771 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46993 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.46673 * 60.00275 * 14 13 12 43 43 H 1.08999 * 109.47225 * 184.99969 * 17 15 14 44 44 H 1.08998 * 109.47277 * 304.99671 * 17 15 14 45 45 H 0.97001 * 120.00297 * 359.97438 * 18 17 15 46 46 H 0.97007 * 119.99490 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.43681 * 179.97438 * 27 5 4 48 48 H 1.07997 * 119.50718 * 179.72524 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2724 0.0005 5 6 4.0516 2.5234 0.0000 6 6 5.5284 2.6413 0.0011 7 8 6.2178 1.6407 0.0020 8 7 6.1073 3.8584 0.0011 9 6 7.5677 3.9750 0.0027 10 1 7.9976 3.1644 -0.5856 11 6 8.0843 3.8913 1.4405 12 6 7.4809 5.0291 2.2663 13 6 7.8859 6.3725 1.6562 14 6 7.3693 6.4562 0.2185 15 6 7.9728 5.3184 -0.6073 16 1 9.0593 5.4051 -0.6061 17 6 7.4557 5.4018 -2.0448 18 7 7.9435 6.6343 -2.6686 19 6 7.6063 6.9264 -3.9633 20 1 6.9811 6.2479 -4.5247 21 6 8.0690 8.0940 -4.5544 22 7 8.8313 8.9206 -3.8704 23 14 7.6084 8.4928 -6.3203 24 1 6.3479 9.2775 -6.3381 25 1 8.6949 9.2871 -6.9479 26 1 7.4165 7.2306 -7.0789 27 6 3.2397 3.6634 -0.0005 28 6 1.8682 3.5115 -0.0010 29 7 1.3180 2.3127 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 4.0231 0.3681 0.0005 34 1 5.5570 4.6572 -0.0001 35 1 7.7957 2.9342 1.8750 36 1 9.1708 3.9784 1.4418 37 1 7.8485 4.9692 3.2907 38 1 6.3943 4.9424 2.2650 39 1 8.9724 6.4593 1.6575 40 1 7.4563 7.1831 2.2449 41 1 7.6583 7.4131 -0.2162 42 1 6.2828 6.3695 0.2173 43 1 7.8143 4.5418 -2.6104 44 1 6.3657 5.4041 -2.0394 45 1 8.5047 7.2439 -2.1642 46 1 9.1543 9.7368 -4.2834 47 1 3.6808 4.6492 -0.0006 48 1 1.2360 4.3870 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754344322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:37 Heat of formation + Delta-G solvation = -37.328385 kcal Electronic energy + Delta-G solvation = -28923.648791 eV Core-core repulsion = 24978.720949 eV Total energy + Delta-G solvation = -3944.927841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14483 -40.17616 -38.48403 -37.74841 -34.69120 -33.88831 -32.83035 -31.95196 -31.08509 -29.86668 -29.40283 -27.62853 -25.43856 -24.62329 -23.61050 -23.02449 -22.25975 -21.26514 -20.58107 -19.05072 -19.00670 -17.54681 -17.22294 -16.58030 -16.32693 -16.11109 -15.62465 -15.42654 -14.89512 -14.67536 -14.57606 -14.36498 -14.10876 -14.03318 -13.71024 -13.51159 -13.29788 -13.09210 -12.79712 -12.47800 -12.15801 -12.07051 -11.96071 -11.72410 -11.53253 -11.45103 -10.92575 -10.90788 -10.75713 -10.44703 -10.34849 -10.23149 -10.19535 -10.01849 -9.90182 -9.85705 -9.65129 -9.01051 -8.87488 -8.85090 -6.94158 -5.79098 -3.07407 0.45298 0.84243 2.63072 2.75448 3.13563 3.41895 3.47708 3.49130 3.58433 3.98394 4.35744 4.55046 4.65595 4.72104 4.76757 4.83428 4.86321 4.88483 4.97300 5.01304 5.20650 5.29064 5.30284 5.39145 5.49348 5.54297 5.56371 5.59917 5.64533 5.70946 5.75568 5.78191 5.96945 6.00781 6.10712 6.12296 6.20131 6.23272 6.32853 6.43177 6.49747 6.64016 6.77205 6.82858 6.88813 7.41434 7.48054 7.68485 8.07920 8.40063 9.51522 10.08776 10.43586 11.43705 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.003092 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.750550 B = 9053.039460 C =10825.065389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.316 3.684 4 C -0.133 4.133 5 C -0.049 4.049 6 C 0.558 3.442 7 O -0.530 6.530 8 N -0.703 5.703 9 C 0.154 3.846 10 H 0.091 0.909 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.121 4.121 14 C -0.110 4.110 15 C -0.102 4.102 16 H 0.088 0.912 17 C 0.160 3.840 18 N -0.730 5.730 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.179 4.179 28 C 0.139 3.861 29 N -0.528 5.528 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.154 0.846 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.143 0.857 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.542 -12.055 14.596 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.137 3.863 4 C -0.155 4.155 5 C -0.060 4.060 6 C 0.344 3.656 7 O -0.407 6.407 8 N -0.355 5.355 9 C 0.050 3.950 10 H 0.109 0.891 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.148 4.148 15 C -0.121 4.121 16 H 0.106 0.894 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.200 4.200 28 C -0.016 4.016 29 N -0.253 5.253 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.172 0.828 34 H 0.239 0.761 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.161 0.839 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.875 -13.129 14.418 23.367 hybrid contribution 0.253 1.144 -0.920 1.490 sum -12.622 -11.985 13.498 22.026 Atomic orbital electron populations 1.22883 0.77006 1.03069 1.02541 1.86258 1.23051 1.24190 1.87770 1.19681 0.89006 0.84858 0.92723 1.21121 0.91869 0.99158 1.03315 1.20185 0.94048 0.93269 0.98455 1.18030 0.86611 0.83973 0.77022 1.90778 1.64072 1.36426 1.49401 1.46019 1.08386 1.07593 1.73522 1.21046 0.78683 0.98884 0.96395 0.89113 1.21912 1.00849 0.98854 0.95109 1.21500 1.00514 0.94847 0.98524 1.21592 1.01299 0.96598 0.96376 1.21535 0.99389 0.99787 0.94090 1.21645 1.01716 0.92691 0.96088 0.89404 1.20646 0.96085 0.90489 0.89601 1.42359 1.61079 1.21392 1.12660 1.19214 1.25341 1.03343 0.89086 0.91316 1.24721 1.00410 0.97471 0.98316 1.69653 1.39114 1.13006 1.36441 0.86207 0.77452 0.77909 0.84741 1.21743 1.21771 1.20782 1.22214 0.95020 0.99147 1.03622 1.22382 0.92572 0.93632 0.93022 1.67190 1.41268 0.98943 1.17855 0.92152 0.88521 0.92234 0.82806 0.76091 0.91660 0.90790 0.92380 0.92364 0.91812 0.92203 0.90127 0.92836 0.96393 0.96505 0.78193 0.93530 0.83906 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.33 10.47 -18.74 -0.20 -3.53 16 3 C 0.32 3.70 7.49 -17.16 -0.13 3.57 16 4 C -0.13 -1.61 9.61 -38.84 -0.37 -1.98 16 5 C -0.05 -0.58 5.91 -104.68 -0.62 -1.19 16 6 C 0.56 7.53 7.76 -12.19 -0.09 7.43 16 7 O -0.53 -8.74 16.10 5.35 0.09 -8.65 16 8 N -0.70 -8.52 3.57 -54.65 -0.20 -8.72 16 9 C 0.15 2.01 2.23 -67.93 -0.15 1.86 16 10 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 11 C -0.13 -1.46 5.60 -26.73 -0.15 -1.61 16 12 C -0.12 -1.19 5.77 -26.73 -0.15 -1.35 16 13 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 14 C -0.11 -1.49 4.90 -26.73 -0.13 -1.62 16 15 C -0.10 -1.50 2.02 -90.62 -0.18 -1.68 16 16 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 17 C 0.16 3.05 5.42 -4.04 -0.02 3.02 16 18 N -0.73 -17.71 5.33 -59.91 -0.32 -18.03 16 19 C -0.24 -6.56 9.99 -15.05 -0.15 -6.71 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.18 -1.71 9.61 -39.03 -0.38 -2.08 16 28 C 0.14 1.27 11.17 -17.62 -0.20 1.08 16 29 N -0.53 -5.79 9.18 -13.38 -0.12 -5.91 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.15 1.86 7.74 -52.48 -0.41 1.45 16 34 H 0.40 4.30 4.81 -40.82 -0.20 4.11 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.31 7.18 -51.93 -0.37 0.94 16 42 H 0.05 0.66 6.51 -51.93 -0.34 0.32 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.32 7.61 -51.93 -0.39 -0.07 16 45 H 0.38 9.71 6.85 -40.82 -0.28 9.43 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.14 1.07 6.53 -52.49 -0.34 0.73 16 48 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -32.63 385.80 -8.48 -41.11 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.31 Total: 9.55 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.93 Total: -1.89 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.09 Total: -59.61 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.11 Total: -12.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.63 -8.48 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754344322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.783 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds