Wall clock time and date at job start Tue Mar 31 2020 17:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35679 * 117.00487 * 2 1 4 4 C 1.38896 * 119.62785 * 179.97438 * 3 2 1 5 5 C 1.39571 * 118.95011 * 179.97438 * 4 3 2 6 6 C 1.48158 * 120.89233 * 179.97438 * 5 4 3 7 7 O 1.21512 * 120.00127 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00006 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47050 * 34.99305 * 9 8 6 11 11 C 1.53001 * 109.46790 * 274.99374 * 9 8 6 12 12 C 1.53001 * 109.47286 * 300.00111 * 11 9 8 13 13 C 1.53003 * 109.47095 * 300.00374 * 12 11 9 14 14 C 1.53001 * 109.47360 * 59.99671 * 13 12 11 15 15 C 1.52996 * 109.46982 * 300.00309 * 14 13 12 16 16 H 1.08999 * 109.47389 * 299.99528 * 15 14 13 17 17 C 1.53001 * 109.46982 * 179.97438 * 15 14 13 18 18 N 1.46499 * 109.47103 * 64.99768 * 17 15 14 19 19 C 1.36946 * 119.99687 * 180.02562 * 18 17 15 20 20 H 1.07992 * 120.00200 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99422 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00088 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47515 * 89.99903 * 23 21 19 25 25 H 1.48502 * 109.46796 * 210.00210 * 23 21 19 26 26 H 1.48507 * 109.47063 * 329.99515 * 23 21 19 27 27 C 1.39961 * 118.21607 * 0.02562 * 5 4 3 28 28 C 1.37985 * 119.13401 * 359.97438 * 27 5 4 29 29 N 1.31899 * 120.97771 * 0.02562 * 28 27 5 30 30 H 1.08999 * 109.46982 * 59.99995 * 1 2 3 31 31 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46567 * 300.00223 * 1 2 3 33 33 H 1.08004 * 120.52345 * 0.02562 * 4 3 2 34 34 H 0.96996 * 119.99973 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46993 * 60.00120 * 11 9 8 36 36 H 1.08999 * 109.47197 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.47174 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.47018 * 59.99871 * 12 11 9 39 39 H 1.08999 * 109.46777 * 299.99645 * 13 12 11 40 40 H 1.09002 * 109.46771 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46993 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.46673 * 60.00275 * 14 13 12 43 43 H 1.08999 * 109.47225 * 184.99969 * 17 15 14 44 44 H 1.08998 * 109.47277 * 304.99671 * 17 15 14 45 45 H 0.97001 * 120.00297 * 359.97438 * 18 17 15 46 46 H 0.97007 * 119.99490 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.43681 * 179.97438 * 27 5 4 48 48 H 1.07997 * 119.50718 * 179.72524 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2724 0.0005 5 6 4.0516 2.5234 0.0000 6 6 5.5284 2.6413 0.0011 7 8 6.2178 1.6407 0.0020 8 7 6.1073 3.8584 0.0011 9 6 7.5677 3.9750 0.0027 10 1 7.9976 3.1644 -0.5856 11 6 8.0843 3.8913 1.4405 12 6 7.4809 5.0291 2.2663 13 6 7.8859 6.3725 1.6562 14 6 7.3693 6.4562 0.2185 15 6 7.9728 5.3184 -0.6073 16 1 9.0593 5.4051 -0.6061 17 6 7.4557 5.4018 -2.0448 18 7 7.9435 6.6343 -2.6686 19 6 7.6063 6.9264 -3.9633 20 1 6.9811 6.2479 -4.5247 21 6 8.0690 8.0940 -4.5544 22 7 8.8313 8.9206 -3.8704 23 14 7.6084 8.4928 -6.3203 24 1 6.3479 9.2775 -6.3381 25 1 8.6949 9.2871 -6.9479 26 1 7.4165 7.2306 -7.0789 27 6 3.2397 3.6634 -0.0005 28 6 1.8682 3.5115 -0.0010 29 7 1.3180 2.3127 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 4.0231 0.3681 0.0005 34 1 5.5570 4.6572 -0.0001 35 1 7.7957 2.9342 1.8750 36 1 9.1708 3.9784 1.4418 37 1 7.8485 4.9692 3.2907 38 1 6.3943 4.9424 2.2650 39 1 8.9724 6.4593 1.6575 40 1 7.4563 7.1831 2.2449 41 1 7.6583 7.4131 -0.2162 42 1 6.2828 6.3695 0.2173 43 1 7.8143 4.5418 -2.6104 44 1 6.3657 5.4041 -2.0394 45 1 8.5047 7.2439 -2.1642 46 1 9.1543 9.7368 -4.2834 47 1 3.6808 4.6492 -0.0006 48 1 1.2360 4.3870 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754344322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:36 Heat of formation + Delta-G solvation = -59.390122 kcal Electronic energy + Delta-G solvation = -28924.605459 eV Core-core repulsion = 24978.720949 eV Total energy + Delta-G solvation = -3945.884510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.04582 -41.17143 -39.49641 -38.65587 -36.45553 -34.93403 -33.76370 -33.64379 -31.89553 -31.23280 -30.65908 -28.28896 -27.01842 -25.63080 -24.67767 -24.41363 -23.33836 -22.27727 -21.85058 -20.10755 -19.96228 -19.13612 -18.37609 -17.49806 -17.10717 -17.05150 -16.80251 -16.55018 -16.31302 -16.03272 -15.48756 -15.39047 -15.16521 -15.08992 -14.94462 -14.86429 -14.64248 -14.31654 -14.05884 -13.42509 -13.23558 -13.10930 -12.97034 -12.86381 -12.71313 -12.68576 -12.58918 -12.22130 -12.11000 -11.92558 -11.84015 -11.47408 -11.36294 -11.19219 -11.09783 -11.01704 -10.84647 -10.75382 -10.07734 -9.63672 -8.97574 -7.94579 -5.22342 -0.43700 0.04771 1.47756 1.48623 1.57039 1.75199 1.79303 2.22795 2.56042 2.72928 3.25017 3.38994 3.44488 3.60412 3.78966 3.83869 3.86849 3.93352 4.04584 4.10302 4.24456 4.42178 4.43185 4.44068 4.49283 4.49995 4.58963 4.60744 4.65631 4.71882 4.74814 4.77449 4.91734 4.94498 5.03015 5.09396 5.18191 5.23546 5.28466 5.32327 5.33971 5.45043 5.49066 5.54144 5.60031 6.13230 6.27964 6.40275 6.68384 7.04578 7.35318 8.10808 8.35230 9.28566 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.003092 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.750550 B = 9053.039460 C =10825.065389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.307 3.693 4 C -0.150 4.150 5 C -0.060 4.060 6 C 0.559 3.441 7 O -0.566 6.566 8 N -0.693 5.693 9 C 0.161 3.839 10 H 0.071 0.929 11 C -0.123 4.123 12 C -0.109 4.109 13 C -0.114 4.114 14 C -0.105 4.105 15 C -0.088 4.088 16 H 0.080 0.920 17 C 0.160 3.840 18 N -0.739 5.739 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.969 3.031 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.274 1.274 27 C -0.171 4.171 28 C 0.143 3.857 29 N -0.534 5.534 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.143 0.857 34 H 0.411 0.589 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.003 0.997 44 H 0.026 0.974 45 H 0.377 0.623 46 H 0.251 0.749 47 H 0.167 0.833 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 -11.565 15.480 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.129 3.871 4 C -0.172 4.172 5 C -0.070 4.070 6 C 0.346 3.654 7 O -0.446 6.446 8 N -0.346 5.346 9 C 0.056 3.944 10 H 0.089 0.911 11 C -0.162 4.162 12 C -0.147 4.147 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.108 4.108 16 H 0.098 0.902 17 C 0.033 3.967 18 N -0.382 5.382 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.798 3.202 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.200 1.200 27 C -0.192 4.192 28 C -0.012 4.012 29 N -0.258 5.258 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.044 0.956 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.184 0.816 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.640 -12.662 15.313 24.681 hybrid contribution 0.742 0.948 -1.198 1.698 sum -13.899 -11.714 14.115 23.014 Atomic orbital electron populations 1.23112 0.75336 1.04819 1.02575 1.86240 1.24775 1.24103 1.87683 1.19745 0.88926 0.85434 0.93020 1.21104 0.92337 0.99113 1.04635 1.20092 0.93059 0.94111 0.99759 1.18287 0.87322 0.83615 0.76193 1.90758 1.65055 1.37604 1.51180 1.45913 1.08040 1.07690 1.72940 1.20884 0.79251 0.96880 0.97355 0.91122 1.21862 1.01315 0.99294 0.93684 1.21464 1.00896 0.93359 0.98963 1.21535 1.01212 0.97730 0.94682 1.21469 1.00221 0.97364 0.95262 1.21466 1.01198 0.94382 0.93707 0.90200 1.20764 0.96368 0.87754 0.91768 1.42513 1.61012 1.22720 1.11977 1.19561 1.24544 1.03121 0.90384 0.91229 1.25476 1.01039 0.97712 1.02110 1.69795 1.40551 1.13360 1.37924 0.85215 0.76955 0.77703 0.80337 1.21142 1.22231 1.19959 1.22475 0.95121 0.99276 1.02317 1.23026 0.92887 0.94074 0.91228 1.67282 1.41350 0.99315 1.17899 0.92262 0.86026 0.91950 0.83917 0.75031 0.92140 0.90175 0.90662 0.91650 0.92027 0.90734 0.93072 0.91413 0.97945 0.95616 0.79047 0.93983 0.81573 0.77975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 113.37 1.18 1.67 16 2 O -0.32 -6.88 10.47 -89.97 -0.94 -7.82 16 3 C 0.31 7.03 7.49 84.80 0.63 7.67 16 4 C -0.15 -3.66 9.61 22.75 0.22 -3.45 16 5 C -0.06 -1.36 5.91 -19.90 -0.12 -1.48 16 6 C 0.56 14.89 7.76 86.88 0.67 15.57 16 7 O -0.57 -19.10 16.10 -3.75 -0.06 -19.16 16 8 N -0.69 -16.03 3.57 -445.11 -1.59 -17.62 16 9 C 0.16 4.11 2.23 44.99 0.10 4.21 16 10 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 11 C -0.12 -2.62 5.60 30.59 0.17 -2.45 16 12 C -0.11 -1.94 5.77 30.60 0.18 -1.76 16 13 C -0.11 -2.27 5.92 30.60 0.18 -2.09 16 14 C -0.11 -2.70 4.90 30.59 0.15 -2.55 16 15 C -0.09 -2.56 2.02 -10.80 -0.02 -2.58 16 16 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 17 C 0.16 6.11 5.42 86.38 0.47 6.58 16 18 N -0.74 -36.15 5.33 -343.45 -1.83 -37.98 16 19 C -0.24 -13.43 9.99 84.03 0.84 -12.60 16 20 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 21 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 22 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 23 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 27 C -0.17 -2.85 9.61 22.63 0.22 -2.64 16 28 C 0.14 2.22 11.17 84.62 0.94 3.16 16 29 N -0.53 -10.78 9.18 -309.14 -2.84 -13.62 16 30 H 0.06 0.82 8.10 -2.39 -0.02 0.81 16 31 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.82 8.10 -2.38 -0.02 0.80 16 33 H 0.14 3.68 7.74 -2.91 -0.02 3.66 16 34 H 0.41 7.89 4.81 -92.71 -0.45 7.45 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.09 7.60 -2.39 -0.02 1.07 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 1.64 7.18 -2.39 -0.02 1.63 16 42 H 0.07 1.52 6.51 -2.39 -0.02 1.50 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.03 0.95 7.61 -2.39 -0.02 0.93 16 45 H 0.38 19.39 6.85 -92.71 -0.63 18.76 16 46 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 47 H 0.17 1.91 6.53 -2.91 -0.02 1.89 16 48 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -71.03 385.80 1.23 -69.80 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.10 Total: 32.47 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.28 Total: 3.75 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -5.98 Total: -126.72 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.00 Total: -26.98 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.03 1.23 -69.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754344322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.406 kcal (2) G-P(sol) polarization free energy of solvation -71.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds