Wall clock time and date at job start Tue Mar 31 2020 17:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00181 * 2 1 4 4 O 1.21550 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.47860 * 120.00137 * 180.02562 * 3 2 1 6 6 C 1.39705 * 120.07184 * 0.02562 * 5 3 2 7 7 C 1.38054 * 120.14502 * 180.25571 * 6 5 3 8 8 C 1.38110 * 120.29479 * 359.44115 * 7 6 5 9 9 C 1.39661 * 120.14279 * 0.55567 * 8 7 6 10 10 C 1.47864 * 120.07234 * 179.74554 * 9 8 7 11 11 O 1.21550 * 119.99547 * 139.40042 * 10 9 8 12 12 N 1.34770 * 120.00121 * 319.40014 * 10 9 8 13 13 C 1.46508 * 120.00017 * 4.66997 * 12 10 9 14 14 C 1.46500 * 120.00176 * 184.67041 * 12 10 9 15 15 C 1.53002 * 109.47090 * 90.00138 * 14 12 10 16 16 C 1.52995 * 109.47213 * 180.02562 * 15 14 12 17 17 N 1.46505 * 109.47351 * 179.97438 * 16 15 14 18 18 C 1.46499 * 119.99814 * 89.99794 * 17 16 15 19 19 C 1.36932 * 119.99710 * 269.99768 * 17 16 15 20 20 H 1.08003 * 119.99551 * 143.25325 * 19 17 16 21 21 C 1.38808 * 120.00617 * 323.26263 * 19 17 16 22 22 N 1.31619 * 120.00565 * 159.15545 * 21 19 17 23 23 Si 1.86800 * 119.99742 * 339.15515 * 21 19 17 24 24 H 1.48499 * 109.47353 * 95.34244 * 23 21 19 25 25 H 1.48499 * 109.47149 * 215.34317 * 23 21 19 26 26 H 1.48501 * 109.47054 * 335.34296 * 23 21 19 27 27 C 1.39297 * 120.07499 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.46894 * 300.00214 * 1 2 3 29 29 H 1.09007 * 109.47059 * 60.00050 * 1 2 3 30 30 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99820 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.93081 * 359.97390 * 6 5 3 33 33 H 1.08003 * 119.85497 * 179.70027 * 7 6 5 34 34 H 1.08001 * 119.92622 * 180.27477 * 8 7 6 35 35 H 1.09001 * 109.46771 * 88.03108 * 13 12 10 36 36 H 1.09001 * 109.46945 * 208.03298 * 13 12 10 37 37 H 1.08999 * 109.46837 * 328.03538 * 13 12 10 38 38 H 1.08998 * 109.47035 * 209.99685 * 14 12 10 39 39 H 1.08992 * 109.47107 * 330.00250 * 14 12 10 40 40 H 1.09006 * 109.47107 * 300.00225 * 15 14 12 41 41 H 1.08994 * 109.47548 * 59.99914 * 15 14 12 42 42 H 1.09006 * 109.47145 * 300.00052 * 16 15 14 43 43 H 1.09008 * 109.47186 * 59.99575 * 16 15 14 44 44 H 1.09002 * 109.46591 * 85.11853 * 18 17 16 45 45 H 1.09001 * 109.46538 * 205.11640 * 18 17 16 46 46 H 1.08994 * 109.46942 * 325.12177 * 18 17 16 47 47 H 0.96997 * 120.00501 * 179.97438 * 22 21 19 48 48 H 1.07999 * 120.14453 * 0.02562 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6175 1.1671 -0.0006 6 6 4.3175 -0.0419 -0.0017 7 6 5.6981 -0.0437 0.0031 8 6 6.3963 1.1479 -0.0026 9 6 5.7089 2.3636 -0.0016 10 6 6.4580 3.6384 -0.0021 11 8 6.0761 4.5675 -0.6865 12 7 7.5643 3.7703 0.7564 13 6 8.0829 2.6203 1.5014 14 6 8.2482 5.0634 0.8358 15 6 7.6677 5.8770 1.9942 16 6 8.3815 7.2277 2.0768 17 7 7.8253 8.0071 3.1857 18 6 8.4078 7.8939 4.5251 19 6 6.7610 8.8413 2.9700 20 1 5.9970 8.9482 3.7259 21 6 6.6638 9.5492 1.7800 22 7 5.4978 10.0136 1.3837 23 14 8.1881 9.8429 0.7410 24 1 8.2805 8.7971 -0.3092 25 1 8.1010 11.1803 0.1013 26 1 9.3947 9.7850 1.6047 27 6 4.3156 2.3726 -0.0011 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.7776 -0.9772 -0.0016 33 1 6.2345 -0.9810 0.0072 34 1 7.4763 1.1396 -0.0033 35 1 8.7681 2.0564 0.8685 36 1 8.6118 2.9704 2.3879 37 1 7.2546 1.9787 1.8021 38 1 9.3130 4.9015 1.0032 39 1 8.1057 5.6077 -0.0977 40 1 6.6028 6.0388 1.8269 41 1 7.8101 5.3328 2.9278 42 1 9.4465 7.0663 2.2439 43 1 8.2387 7.7719 1.1431 44 1 9.2548 8.5745 4.6115 45 1 7.6562 8.1525 5.2711 46 1 8.7456 6.8707 4.6891 47 1 5.4300 10.5086 0.5523 48 1 3.7792 3.3099 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755047468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:59 Heat of formation + Delta-G solvation = -1.519095 kcal Electronic energy + Delta-G solvation = -28424.641047 eV Core-core repulsion = 24481.266014 eV Total energy + Delta-G solvation = -3943.375034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78756 -39.80641 -38.11218 -36.44026 -35.44156 -35.01410 -32.56703 -31.59184 -31.41543 -30.68926 -27.50975 -27.06268 -26.35393 -25.55480 -23.92113 -23.22507 -21.84600 -21.03053 -20.58577 -19.73800 -18.28823 -16.92552 -16.72705 -16.57243 -16.34521 -15.87513 -15.57371 -15.47970 -15.22484 -14.66286 -14.56453 -14.08999 -13.97553 -13.54276 -13.51176 -13.44974 -13.17702 -13.14241 -12.79556 -12.67880 -12.57579 -12.43054 -11.97800 -11.90471 -11.78108 -11.64602 -11.30133 -11.05294 -10.76004 -10.38536 -10.35353 -10.30294 -9.82509 -9.66280 -9.55730 -9.39865 -9.33467 -9.24846 -8.59466 -8.41872 -6.74836 -5.87994 -3.30385 0.37305 0.82148 2.38048 2.71666 2.91296 3.06524 3.40181 3.53079 3.57248 3.58234 4.23684 4.26869 4.42103 4.61762 4.64664 4.72003 4.86376 4.97768 5.04787 5.07337 5.17000 5.19848 5.24123 5.40477 5.46899 5.47632 5.51244 5.54961 5.79547 5.85690 5.88768 5.93252 5.97165 5.99953 6.07040 6.15987 6.31164 6.37840 6.40502 6.55666 6.71054 6.74148 6.84738 7.08303 7.11608 7.39052 7.88821 8.14935 8.21598 8.46620 9.07276 9.81109 10.20403 11.27724 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.002822 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.442410 B = 9919.075329 C =10960.196261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.734 5.734 3 C 0.557 3.443 4 O -0.523 6.523 5 C -0.142 4.142 6 C -0.070 4.070 7 C -0.134 4.134 8 C -0.069 4.069 9 C -0.127 4.127 10 C 0.552 3.448 11 O -0.515 6.515 12 N -0.609 5.609 13 C 0.072 3.928 14 C 0.114 3.886 15 C -0.147 4.147 16 C 0.142 3.858 17 N -0.613 5.613 18 C 0.127 3.873 19 C -0.272 4.272 20 H 0.078 0.922 21 C 0.035 3.965 22 N -0.899 5.899 23 Si 0.882 3.118 24 H -0.283 1.283 25 H -0.302 1.302 26 H -0.271 1.271 27 C -0.005 4.005 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.400 0.600 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.005 0.995 45 H 0.044 0.956 46 H 0.024 0.976 47 H 0.263 0.737 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -30.018 -1.932 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.387 5.387 3 C 0.344 3.656 4 O -0.400 6.400 5 C -0.145 4.145 6 C -0.089 4.089 7 C -0.152 4.152 8 C -0.088 4.088 9 C -0.130 4.130 10 C 0.339 3.661 11 O -0.390 6.390 12 N -0.342 5.342 13 C -0.071 4.071 14 C -0.009 4.009 15 C -0.188 4.188 16 C 0.015 3.985 17 N -0.337 5.337 18 C -0.018 4.018 19 C -0.400 4.400 20 H 0.095 0.905 21 C -0.166 4.166 22 N -0.540 5.540 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.231 1.231 26 H -0.196 1.196 27 C -0.025 4.025 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.235 0.765 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.514 -28.608 -2.379 28.712 hybrid contribution 0.983 -0.356 -0.582 1.196 sum 1.497 -28.964 -2.961 29.153 Atomic orbital electron populations 1.21574 0.78998 1.02297 1.02785 1.45675 1.07979 1.08425 1.76596 1.18266 0.87133 0.83861 0.76349 1.90849 1.69721 1.31006 1.48381 1.19811 0.92873 0.94158 1.07697 1.21404 0.94740 0.96698 0.96050 1.21028 0.93807 0.98252 1.02120 1.21831 1.00960 0.91342 0.94647 1.19961 0.93995 0.93792 1.05281 1.18274 0.80512 0.87159 0.80113 1.90881 1.66799 1.40560 1.40793 1.47793 1.27515 1.11872 1.47001 1.22103 0.99563 0.88869 0.96557 1.21664 0.95318 0.82508 1.01382 1.22492 1.02989 0.97192 0.96159 1.21066 0.94390 0.90462 0.92551 1.44030 1.37285 1.47853 1.04517 1.21043 0.96302 0.96865 0.87616 1.18777 0.98352 1.18710 1.04210 0.90465 1.25441 0.96236 0.96974 0.97912 1.69848 1.22660 1.38999 1.22536 0.86853 0.85549 0.76219 0.80122 1.21112 1.23056 1.19634 1.21389 0.92307 0.98664 0.90107 0.91895 0.91947 0.90523 0.76519 0.85378 0.84660 0.84231 0.92497 0.90628 0.90683 0.90789 0.89693 0.90766 0.92820 0.94394 0.92915 0.97639 0.93701 0.95683 0.92689 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.73 -5.59 5.66 -68.04 -0.39 -5.98 16 3 C 0.56 6.75 7.77 -12.32 -0.10 6.65 16 4 O -0.52 -8.84 16.34 5.32 0.09 -8.76 16 5 C -0.14 -1.57 5.87 -105.02 -0.62 -2.19 16 6 C -0.07 -0.49 9.54 -39.10 -0.37 -0.86 16 7 C -0.13 -0.86 10.02 -39.70 -0.40 -1.26 16 8 C -0.07 -0.60 7.53 -39.10 -0.29 -0.89 16 9 C -0.13 -1.66 5.18 -105.02 -0.54 -2.20 16 10 C 0.55 9.19 7.33 -12.32 -0.09 9.10 16 11 O -0.52 -11.21 16.48 5.32 0.09 -11.12 16 12 N -0.61 -8.67 2.87 -182.68 -0.52 -9.19 16 13 C 0.07 0.65 8.90 59.85 0.53 1.18 16 14 C 0.11 1.85 5.43 -4.04 -0.02 1.82 16 15 C -0.15 -2.90 5.86 -26.73 -0.16 -3.06 16 16 C 0.14 3.17 4.51 -4.04 -0.02 3.15 16 17 N -0.61 -15.37 2.50 -181.12 -0.45 -15.82 16 18 C 0.13 2.63 10.70 59.85 0.64 3.27 16 19 C -0.27 -8.05 9.92 -15.06 -0.15 -8.20 16 20 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 21 C 0.04 1.07 5.33 -17.43 -0.09 0.98 16 22 N -0.90 -29.12 13.97 55.49 0.78 -28.35 16 23 Si 0.88 23.52 24.90 -169.99 -4.23 19.28 16 24 H -0.28 -7.37 6.69 56.52 0.38 -6.99 16 25 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 26 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 27 C -0.01 -0.07 9.18 -38.78 -0.36 -0.43 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.40 1.61 6.85 -40.82 -0.28 1.33 16 32 H 0.13 0.42 6.39 -52.49 -0.34 0.08 16 33 H 0.14 0.44 8.06 -52.48 -0.42 0.01 16 34 H 0.14 0.90 5.51 -52.49 -0.29 0.62 16 35 H 0.06 0.36 7.06 -51.93 -0.37 0.00 16 36 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.07 0.61 5.69 -51.93 -0.30 0.31 16 38 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.08 1.60 7.36 -51.93 -0.38 1.22 16 40 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 43 H 0.05 1.32 3.03 -51.92 -0.16 1.16 16 44 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 46 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 47 H 0.26 8.10 8.31 -40.82 -0.34 7.76 16 48 H 0.15 2.49 7.64 -52.49 -0.40 2.09 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -40.10 390.55 -7.30 -47.39 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.14 Total: -1.62 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -1.39 Total: 8.27 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.59 Total: -59.34 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.17 Total: -19.88 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.23 Total: 19.28 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.10 -7.30 -47.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755047468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.873 kcal (2) G-P(sol) polarization free energy of solvation -40.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds