Wall clock time and date at job start Tue Mar 31 2020 17:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 120.00181 * 2 1 4 4 O 1.21550 * 120.00258 * 359.97438 * 3 2 1 5 5 C 1.47860 * 120.00137 * 180.02562 * 3 2 1 6 6 C 1.39705 * 120.07184 * 0.02562 * 5 3 2 7 7 C 1.38054 * 120.14502 * 180.25571 * 6 5 3 8 8 C 1.38110 * 120.29479 * 359.44115 * 7 6 5 9 9 C 1.39661 * 120.14279 * 0.55567 * 8 7 6 10 10 C 1.47864 * 120.07234 * 179.74554 * 9 8 7 11 11 O 1.21550 * 119.99547 * 139.40042 * 10 9 8 12 12 N 1.34770 * 120.00121 * 319.40014 * 10 9 8 13 13 C 1.46508 * 120.00017 * 4.66997 * 12 10 9 14 14 C 1.46500 * 120.00176 * 184.67041 * 12 10 9 15 15 C 1.53002 * 109.47090 * 90.00138 * 14 12 10 16 16 C 1.52995 * 109.47213 * 180.02562 * 15 14 12 17 17 N 1.46505 * 109.47351 * 179.97438 * 16 15 14 18 18 C 1.46499 * 119.99814 * 89.99794 * 17 16 15 19 19 C 1.36932 * 119.99710 * 269.99768 * 17 16 15 20 20 H 1.08003 * 119.99551 * 143.25325 * 19 17 16 21 21 C 1.38808 * 120.00617 * 323.26263 * 19 17 16 22 22 N 1.31619 * 120.00565 * 159.15545 * 21 19 17 23 23 Si 1.86800 * 119.99742 * 339.15515 * 21 19 17 24 24 H 1.48499 * 109.47353 * 95.34244 * 23 21 19 25 25 H 1.48499 * 109.47149 * 215.34317 * 23 21 19 26 26 H 1.48501 * 109.47054 * 335.34296 * 23 21 19 27 27 C 1.39297 * 120.07499 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.46894 * 300.00214 * 1 2 3 29 29 H 1.09007 * 109.47059 * 60.00050 * 1 2 3 30 30 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99820 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.93081 * 359.97390 * 6 5 3 33 33 H 1.08003 * 119.85497 * 179.70027 * 7 6 5 34 34 H 1.08001 * 119.92622 * 180.27477 * 8 7 6 35 35 H 1.09001 * 109.46771 * 88.03108 * 13 12 10 36 36 H 1.09001 * 109.46945 * 208.03298 * 13 12 10 37 37 H 1.08999 * 109.46837 * 328.03538 * 13 12 10 38 38 H 1.08998 * 109.47035 * 209.99685 * 14 12 10 39 39 H 1.08992 * 109.47107 * 330.00250 * 14 12 10 40 40 H 1.09006 * 109.47107 * 300.00225 * 15 14 12 41 41 H 1.08994 * 109.47548 * 59.99914 * 15 14 12 42 42 H 1.09006 * 109.47145 * 300.00052 * 16 15 14 43 43 H 1.09008 * 109.47186 * 59.99575 * 16 15 14 44 44 H 1.09002 * 109.46591 * 85.11853 * 18 17 16 45 45 H 1.09001 * 109.46538 * 205.11640 * 18 17 16 46 46 H 1.08994 * 109.46942 * 325.12177 * 18 17 16 47 47 H 0.96997 * 120.00501 * 179.97438 * 22 21 19 48 48 H 1.07999 * 120.14453 * 0.02562 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6175 1.1671 -0.0006 6 6 4.3175 -0.0419 -0.0017 7 6 5.6981 -0.0437 0.0031 8 6 6.3963 1.1479 -0.0026 9 6 5.7089 2.3636 -0.0016 10 6 6.4580 3.6384 -0.0021 11 8 6.0761 4.5675 -0.6865 12 7 7.5643 3.7703 0.7564 13 6 8.0829 2.6203 1.5014 14 6 8.2482 5.0634 0.8358 15 6 7.6677 5.8770 1.9942 16 6 8.3815 7.2277 2.0768 17 7 7.8253 8.0071 3.1857 18 6 8.4078 7.8939 4.5251 19 6 6.7610 8.8413 2.9700 20 1 5.9970 8.9482 3.7259 21 6 6.6638 9.5492 1.7800 22 7 5.4978 10.0136 1.3837 23 14 8.1881 9.8429 0.7410 24 1 8.2805 8.7971 -0.3092 25 1 8.1010 11.1803 0.1013 26 1 9.3947 9.7850 1.6047 27 6 4.3156 2.3726 -0.0011 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.7776 -0.9772 -0.0016 33 1 6.2345 -0.9810 0.0072 34 1 7.4763 1.1396 -0.0033 35 1 8.7681 2.0564 0.8685 36 1 8.6118 2.9704 2.3879 37 1 7.2546 1.9787 1.8021 38 1 9.3130 4.9015 1.0032 39 1 8.1057 5.6077 -0.0977 40 1 6.6028 6.0388 1.8269 41 1 7.8101 5.3328 2.9278 42 1 9.4465 7.0663 2.2439 43 1 8.2387 7.7719 1.1431 44 1 9.2548 8.5745 4.6115 45 1 7.6562 8.1525 5.2711 46 1 8.7456 6.8707 4.6891 47 1 5.4300 10.5086 0.5523 48 1 3.7792 3.3099 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755047468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:59 Heat of formation + Delta-G solvation = -33.479088 kcal Electronic energy + Delta-G solvation = -28426.026937 eV Core-core repulsion = 24481.266014 eV Total energy + Delta-G solvation = -3944.760923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75091 -40.86656 -39.05279 -38.18892 -36.86407 -35.86873 -34.13645 -33.35576 -32.24655 -31.96634 -28.51633 -28.06228 -27.85625 -27.12641 -24.85951 -24.32502 -23.20343 -22.50704 -21.91169 -20.74729 -19.26041 -18.81312 -17.87445 -17.50129 -17.42200 -17.25611 -16.95811 -16.51719 -16.35051 -16.01085 -15.61448 -15.36153 -15.18805 -14.97996 -14.82292 -14.69966 -14.32082 -14.23156 -14.11115 -13.94427 -13.61909 -13.44046 -13.34108 -13.15800 -12.93865 -12.78348 -12.67662 -12.53378 -12.41463 -12.30689 -12.23883 -11.76651 -11.36100 -11.31122 -11.05138 -10.68944 -10.38555 -10.14930 -9.98065 -9.76336 -8.81909 -8.25190 -5.63934 -0.38307 -0.03622 1.25713 1.33020 1.44278 1.46379 1.71411 1.98710 2.13488 2.37569 2.73735 2.99102 3.34305 3.42166 3.58775 3.79326 3.92739 3.96154 4.06171 4.20719 4.24920 4.31427 4.37144 4.40991 4.49207 4.57414 4.58523 4.62018 4.68256 4.71786 4.77231 4.82287 4.90712 4.92540 5.00517 5.09893 5.11332 5.16626 5.20082 5.21607 5.29039 5.34162 5.50953 5.72327 5.88276 6.08772 6.27037 6.42725 6.94174 7.01797 7.10577 7.59423 7.98187 8.94873 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.002822 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.442410 B = 9919.075329 C =10960.196261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.709 5.709 3 C 0.547 3.453 4 O -0.591 6.591 5 C -0.155 4.155 6 C -0.046 4.046 7 C -0.111 4.111 8 C -0.054 4.054 9 C -0.148 4.148 10 C 0.540 3.460 11 O -0.592 6.592 12 N -0.604 5.604 13 C 0.061 3.939 14 C 0.119 3.881 15 C -0.132 4.132 16 C 0.134 3.866 17 N -0.629 5.629 18 C 0.124 3.876 19 C -0.262 4.262 20 H 0.035 0.965 21 C -0.032 4.032 22 N -0.955 5.955 23 Si 0.955 3.045 24 H -0.280 1.280 25 H -0.308 1.308 26 H -0.245 1.245 27 C -0.043 4.043 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.124 0.876 31 H 0.422 0.578 32 H 0.179 0.821 33 H 0.192 0.808 34 H 0.172 0.828 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.048 0.952 40 H 0.009 0.991 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.035 0.965 46 H 0.065 0.935 47 H 0.261 0.739 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -36.314 -1.169 36.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.362 5.362 3 C 0.336 3.664 4 O -0.473 6.473 5 C -0.158 4.158 6 C -0.064 4.064 7 C -0.129 4.129 8 C -0.072 4.072 9 C -0.151 4.151 10 C 0.330 3.670 11 O -0.473 6.473 12 N -0.335 5.335 13 C -0.080 4.080 14 C -0.004 4.004 15 C -0.173 4.173 16 C 0.009 3.991 17 N -0.354 5.354 18 C -0.019 4.019 19 C -0.392 4.392 20 H 0.053 0.947 21 C -0.228 4.228 22 N -0.600 5.600 23 Si 0.783 3.217 24 H -0.208 1.208 25 H -0.237 1.237 26 H -0.169 1.169 27 C -0.063 4.063 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.142 0.858 31 H 0.261 0.739 32 H 0.196 0.804 33 H 0.209 0.791 34 H 0.189 0.811 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.144 0.856 39 H 0.067 0.933 40 H 0.028 0.972 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.964 -35.037 -1.549 35.421 hybrid contribution -0.450 1.408 -0.688 1.631 sum 4.515 -33.628 -2.237 34.004 Atomic orbital electron populations 1.21753 0.78187 1.04866 1.01392 1.45529 1.08544 1.07909 1.74208 1.18661 0.87911 0.84145 0.75710 1.90816 1.71012 1.33629 1.51807 1.19790 0.92286 0.94726 1.09011 1.21950 0.95544 0.96366 0.92584 1.21661 0.93375 0.99245 0.98591 1.22188 1.02452 0.89954 0.92615 1.19714 0.93063 0.93934 1.08428 1.19055 0.80847 0.87792 0.79354 1.90827 1.68780 1.43442 1.44229 1.47898 1.26554 1.12637 1.46397 1.22550 1.00695 0.87348 0.97386 1.21513 0.97853 0.83056 0.98011 1.22260 0.98877 0.97221 0.98905 1.21222 0.97032 0.90542 0.90291 1.44218 1.36539 1.47685 1.06957 1.21194 0.96236 0.99678 0.84839 1.18684 0.98780 1.18810 1.02904 0.94704 1.26208 0.99199 0.97429 0.99934 1.70011 1.25193 1.41217 1.23534 0.85676 0.81964 0.75447 0.78575 1.20781 1.23659 1.16851 1.21092 0.93309 0.98000 0.93889 0.93412 0.93426 0.85794 0.73892 0.80420 0.79073 0.81099 0.88421 0.89038 0.89664 0.85558 0.93329 0.97164 0.90254 0.89564 0.95924 0.96089 0.94611 0.91642 0.93025 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.70 127.77 1.37 2.36 16 2 N -0.71 -9.72 5.66 -487.46 -2.76 -12.48 16 3 C 0.55 13.98 7.77 86.79 0.67 14.65 16 4 O -0.59 -22.56 16.34 -3.87 -0.06 -22.62 16 5 C -0.15 -3.45 5.87 -20.12 -0.12 -3.57 16 6 C -0.05 -0.43 9.54 22.58 0.22 -0.22 16 7 C -0.11 -0.72 10.02 22.20 0.22 -0.50 16 8 C -0.05 -0.71 7.53 22.58 0.17 -0.54 16 9 C -0.15 -3.97 5.18 -20.12 -0.10 -4.08 16 10 C 0.54 19.20 7.33 86.79 0.64 19.84 16 11 O -0.59 -29.03 16.48 -3.87 -0.06 -29.09 16 12 N -0.60 -16.66 2.87 -850.17 -2.44 -19.11 16 13 C 0.06 0.82 8.90 127.77 1.14 1.95 16 14 C 0.12 3.76 5.43 86.38 0.47 4.23 16 15 C -0.13 -5.20 5.86 30.59 0.18 -5.02 16 16 C 0.13 5.84 4.51 86.38 0.39 6.23 16 17 N -0.63 -31.40 2.50 -726.92 -1.82 -33.22 16 18 C 0.12 4.87 10.70 127.77 1.37 6.24 16 19 C -0.26 -16.24 9.92 84.03 0.83 -15.40 16 20 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 21 C -0.03 -2.05 5.33 84.86 0.45 -1.60 16 22 N -0.96 -66.21 13.97 21.65 0.30 -65.91 16 23 Si 0.95 50.57 24.90 68.60 1.71 52.28 16 24 H -0.28 -14.54 6.69 99.48 0.67 -13.88 16 25 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 26 H -0.25 -11.79 7.11 99.48 0.71 -11.08 16 27 C -0.04 -1.34 9.18 22.79 0.21 -1.13 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.42 1.66 6.85 -92.71 -0.64 1.02 16 32 H 0.18 -0.12 6.39 -2.91 -0.02 -0.14 16 33 H 0.19 -0.65 8.06 -2.91 -0.02 -0.67 16 34 H 0.17 1.15 5.51 -2.91 -0.02 1.14 16 35 H 0.10 0.59 7.06 -2.39 -0.02 0.58 16 36 H 0.09 1.01 8.06 -2.39 -0.02 0.99 16 37 H 0.08 1.01 5.69 -2.39 -0.01 1.00 16 38 H 0.13 2.69 8.07 -2.39 -0.02 2.67 16 39 H 0.05 1.90 7.36 -2.39 -0.02 1.89 16 40 H 0.01 0.49 8.14 -2.38 -0.02 0.48 16 41 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.09 2.94 8.07 -2.38 -0.02 2.92 16 43 H 0.02 1.14 3.03 -2.38 -0.01 1.13 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.04 1.43 8.00 -2.39 -0.02 1.41 16 46 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 47 H 0.26 17.21 8.31 -92.71 -0.77 16.44 16 48 H 0.09 3.74 7.64 -2.91 -0.02 3.72 16 Total: -1.00 -106.46 390.55 3.26 -103.20 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 0.30 Total: 3.52 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 8.10 Total: 23.44 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -6.72 Total: -130.72 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.13 Total: -51.71 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 1.71 Total: 52.28 kcal Total: -106.46 3.26 -103.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755047468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.722 kcal (2) G-P(sol) polarization free energy of solvation -106.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds