Wall clock time and date at job start Tue Mar 31 2020 17:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99841 * 2 1 4 4 C 1.50703 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.38348 * 120.34943 * 269.98027 * 4 3 2 6 6 N 1.31931 * 121.07679 * 180.02562 * 5 4 3 7 7 C 1.31691 * 121.88201 * 0.02562 * 6 5 4 8 8 C 1.39516 * 120.56776 * 359.97438 * 7 6 5 9 9 C 1.47837 * 120.56150 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00006 * 141.39831 * 9 8 7 11 11 N 1.34775 * 120.00048 * 321.40032 * 9 8 7 12 12 C 1.46505 * 119.99907 * 4.86257 * 11 9 8 13 13 C 1.46500 * 120.00235 * 184.85681 * 11 9 8 14 14 H 1.08996 * 109.46941 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47347 * 240.00006 * 13 11 9 16 16 N 1.46501 * 109.47066 * 55.00154 * 15 13 11 17 17 C 1.36936 * 120.00112 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00271 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00176 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99856 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47310 * 90.00299 * 21 19 17 23 23 H 1.48496 * 109.47208 * 210.00151 * 21 19 17 24 24 H 1.48506 * 109.47167 * 330.00151 * 21 19 17 25 25 C 1.53004 * 109.46876 * 119.99997 * 13 11 9 26 26 C 1.52994 * 117.49873 * 248.74365 * 25 13 11 27 27 C 1.53006 * 117.49658 * 180.08481 * 25 13 11 28 28 C 1.38360 * 120.34533 * 89.99974 * 4 3 2 29 29 H 1.09001 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46502 * 299.99554 * 1 2 3 31 31 H 1.09000 * 109.47174 * 59.99464 * 1 2 3 32 32 H 1.08996 * 109.47605 * 60.00329 * 3 2 1 33 33 H 1.09005 * 109.47458 * 300.00090 * 3 2 1 34 34 H 1.08001 * 119.46230 * 0.03923 * 5 4 3 35 35 H 1.08002 * 119.71409 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47450 * 84.95826 * 12 11 9 37 37 H 1.09003 * 109.47136 * 204.96282 * 12 11 9 38 38 H 1.09000 * 109.46790 * 324.95627 * 12 11 9 39 39 H 1.08996 * 109.47342 * 175.00180 * 15 13 11 40 40 H 1.09001 * 109.47373 * 295.00528 * 15 13 11 41 41 H 0.96997 * 120.00035 * 359.97438 * 16 15 13 42 42 H 0.97002 * 119.99713 * 180.02562 * 20 19 17 43 43 H 1.09000 * 115.54886 * 34.41956 * 25 13 11 44 44 H 1.09004 * 117.50031 * 0.02562 * 26 25 13 45 45 H 1.09009 * 117.49656 * 145.01848 * 26 25 13 46 46 H 1.08996 * 117.49609 * 214.97850 * 27 25 13 47 47 H 1.08999 * 117.49944 * 359.97438 * 27 25 13 48 48 H 1.07997 * 120.85990 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2099 1.1315 1.1930 6 7 5.5250 1.0278 1.2092 7 6 6.2321 0.9726 0.0995 8 6 5.6040 1.0222 -1.1452 9 6 6.3979 0.9608 -2.3908 10 8 5.9822 0.3349 -3.3463 11 7 7.5827 1.5988 -2.4669 12 6 8.1340 2.2635 -1.2835 13 6 8.3192 1.6276 -3.7330 14 1 7.7568 1.0850 -4.4928 15 6 9.6868 0.9688 -3.5425 16 7 9.5077 -0.3809 -3.0015 17 6 10.5996 -1.1668 -2.7464 18 1 11.5929 -0.7920 -2.9444 19 6 10.4298 -2.4458 -2.2343 20 7 11.4794 -3.2011 -1.9886 21 14 8.7117 -3.0946 -1.8925 22 1 8.1910 -3.7789 -3.1032 23 1 8.7617 -4.0571 -0.7629 24 1 7.8166 -1.9634 -1.5397 25 6 8.5098 3.0786 -4.1792 26 6 7.7467 3.5416 -5.4219 27 6 9.2600 3.3217 -5.4904 28 6 4.2088 1.1315 -1.1950 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6689 1.1738 2.1267 35 1 7.3075 0.8883 0.1536 36 1 8.6810 1.5382 -0.6811 37 1 8.8097 3.0598 -1.5957 38 1 7.3216 2.6871 -0.6931 39 1 10.1989 0.9102 -4.5029 40 1 10.2825 1.5621 -2.8488 41 1 8.6156 -0.7175 -2.8233 42 1 11.3607 -4.0950 -1.6311 43 1 8.6513 3.8025 -3.3767 44 1 7.1085 2.8125 -5.9213 45 1 7.3864 4.5703 -5.4370 46 1 9.8946 4.2058 -5.5506 47 1 9.6181 2.4480 -6.0348 48 1 3.6899 1.1731 -2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755560593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:59 Heat of formation + Delta-G solvation = 16.259856 kcal Electronic energy + Delta-G solvation = -29340.876838 eV Core-core repulsion = 25398.272758 eV Total energy + Delta-G solvation = -3942.604081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97474 -39.56818 -38.08097 -37.58190 -35.41252 -34.30815 -33.21654 -32.28837 -31.22118 -28.76930 -27.76849 -26.95311 -25.78980 -24.92384 -23.76137 -22.75837 -22.40728 -21.37933 -20.43512 -19.32212 -17.62439 -17.56031 -17.23416 -16.80933 -16.78255 -16.55647 -15.69033 -15.57071 -15.06396 -14.86385 -14.55472 -14.05436 -13.99285 -13.67514 -13.45542 -13.41541 -13.33594 -12.79815 -12.72558 -12.67616 -12.49282 -12.29966 -11.89005 -11.82999 -11.70063 -11.57746 -11.29517 -10.91158 -10.76568 -10.45743 -10.19877 -10.13380 -10.12587 -9.97885 -9.87643 -9.56118 -9.49434 -9.21972 -8.87588 -8.48781 -7.20480 -5.74629 -3.09587 0.56762 0.94014 2.74193 2.95439 3.35771 3.43630 3.49602 3.53920 3.79432 3.82512 4.16084 4.38831 4.47506 4.61112 4.63979 4.67452 4.68184 4.76827 4.88656 4.92314 4.97700 4.99151 5.04044 5.14597 5.23917 5.30391 5.33182 5.37820 5.48443 5.53782 5.61639 5.65967 5.69918 5.82396 5.85448 5.86833 5.91660 5.95740 6.12317 6.17017 6.30920 6.36496 6.60086 6.73312 6.79245 7.42622 7.67942 8.01171 8.20229 8.44653 9.24121 9.97130 10.16903 11.43535 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.004175 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.583097 B = 6704.928165 C = 8512.265843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.110 3.890 4 C -0.156 4.156 5 C 0.137 3.863 6 N -0.484 5.484 7 C 0.136 3.864 8 C -0.178 4.178 9 C 0.564 3.436 10 O -0.530 6.530 11 N -0.589 5.589 12 C 0.070 3.930 13 C 0.159 3.841 14 H 0.103 0.897 15 C 0.153 3.847 16 N -0.753 5.753 17 C -0.243 4.243 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.933 5.933 21 Si 0.880 3.120 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.160 4.160 26 C -0.179 4.179 27 C -0.167 4.167 28 C -0.003 4.003 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.031 0.969 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.596 17.759 2.858 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.033 3.967 4 C -0.158 4.158 5 C -0.020 4.020 6 N -0.192 5.192 7 C -0.021 4.021 8 C -0.183 4.183 9 C 0.351 3.649 10 O -0.407 6.407 11 N -0.320 5.320 12 C -0.073 4.073 13 C 0.056 3.944 14 H 0.121 0.879 15 C 0.025 3.975 16 N -0.399 5.399 17 C -0.373 4.373 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.581 5.581 21 Si 0.710 3.290 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.180 4.180 26 C -0.216 4.216 27 C -0.205 4.205 28 C -0.029 4.029 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.007 17.145 3.174 25.066 hybrid contribution -1.750 -0.384 -0.420 1.840 sum -19.757 16.761 2.754 26.055 Atomic orbital electron populations 1.22780 0.80675 1.03107 1.00027 1.88017 1.19851 1.27062 1.95407 1.21202 0.88637 0.85448 1.01393 1.20499 0.95730 1.05370 0.94240 1.22889 0.90102 0.91631 0.97426 1.67844 1.07743 1.12865 1.30759 1.23647 1.01425 0.90572 0.86503 1.20983 0.94978 1.06940 0.95406 1.18015 0.80903 0.79066 0.86875 1.90792 1.70546 1.41160 1.38251 1.47539 1.19575 1.53256 1.11645 1.22140 0.99262 0.98097 0.87827 1.21047 0.94355 0.93563 0.85468 0.87943 1.20917 0.92343 0.86606 0.97652 1.42668 1.05746 1.12749 1.78717 1.19019 0.87604 0.94852 1.35792 0.89149 1.24611 0.96286 0.96619 1.01197 1.69698 1.27694 1.09988 1.50712 0.86629 0.85530 0.78801 0.77992 1.21015 1.21690 1.20584 1.22516 1.05957 0.97286 0.92231 1.23026 0.94904 1.02048 1.01619 1.22947 0.94299 1.03527 0.99706 1.21506 0.92129 0.90542 0.98732 0.89382 0.93906 0.93892 0.91787 0.92010 0.82298 0.80910 0.91022 0.90277 0.91361 0.94305 0.95104 0.80380 0.93068 0.87473 0.88711 0.89101 0.88647 0.88134 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.12 10.69 -35.23 -0.38 -4.49 16 3 C 0.11 0.95 6.08 36.01 0.22 1.17 16 4 C -0.16 -1.76 5.52 -104.54 -0.58 -2.33 16 5 C 0.14 1.57 10.85 -17.47 -0.19 1.38 16 6 N -0.48 -6.73 10.35 -12.91 -0.13 -6.86 16 7 C 0.14 1.98 8.76 -17.14 -0.15 1.83 16 8 C -0.18 -2.70 5.26 -104.82 -0.55 -3.25 16 9 C 0.56 9.88 7.08 -12.33 -0.09 9.80 16 10 O -0.53 -11.06 16.27 5.32 0.09 -10.97 16 11 N -0.59 -9.20 2.24 -175.05 -0.39 -9.59 16 12 C 0.07 0.86 7.95 59.85 0.48 1.34 16 13 C 0.16 2.54 2.41 -67.93 -0.16 2.37 16 14 H 0.10 1.87 6.67 -51.93 -0.35 1.52 16 15 C 0.15 2.92 5.32 -4.04 -0.02 2.90 16 16 N -0.75 -18.38 5.24 -59.91 -0.31 -18.70 16 17 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 21 Si 0.88 23.85 27.74 -169.99 -4.71 19.14 16 22 H -0.28 -7.80 7.11 56.52 0.40 -7.40 16 23 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 24 H -0.28 -7.37 6.52 56.52 0.37 -7.01 16 25 C -0.16 -1.96 5.12 -90.62 -0.46 -2.42 16 26 C -0.18 -1.97 10.18 -26.70 -0.27 -2.24 16 27 C -0.17 -1.84 9.80 -26.69 -0.26 -2.10 16 28 C 0.00 -0.04 9.47 -38.87 -0.37 -0.40 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.17 2.47 5.25 -52.49 -0.28 2.20 16 36 H 0.07 0.98 6.87 -51.93 -0.36 0.63 16 37 H 0.08 0.83 6.50 -51.93 -0.34 0.49 16 38 H 0.07 0.72 5.84 -51.93 -0.30 0.42 16 39 H 0.04 0.75 7.47 -51.93 -0.39 0.36 16 40 H 0.03 0.57 7.84 -51.93 -0.41 0.17 16 41 H 0.36 9.18 4.93 -40.82 -0.20 8.98 16 42 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 43 H 0.11 1.16 6.66 -51.93 -0.35 0.82 16 44 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 45 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.10 1.19 7.66 -51.93 -0.40 0.79 16 48 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -36.40 391.13 -7.90 -44.29 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.17 Total: 8.01 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.55 Total: 2.38 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.07 Total: -64.26 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.29 Total: -15.46 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.71 Total: 19.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.40 -7.90 -44.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755560593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.554 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds