Wall clock time and date at job start Tue Mar 31 2020 17:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99841 * 2 1 4 4 C 1.50703 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.38348 * 120.34943 * 269.98027 * 4 3 2 6 6 N 1.31931 * 121.07679 * 180.02562 * 5 4 3 7 7 C 1.31691 * 121.88201 * 0.02562 * 6 5 4 8 8 C 1.39516 * 120.56776 * 359.97438 * 7 6 5 9 9 C 1.47837 * 120.56150 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00006 * 141.39831 * 9 8 7 11 11 N 1.34775 * 120.00048 * 321.40032 * 9 8 7 12 12 C 1.46505 * 119.99907 * 4.86257 * 11 9 8 13 13 C 1.46500 * 120.00235 * 184.85681 * 11 9 8 14 14 H 1.08996 * 109.46941 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47347 * 240.00006 * 13 11 9 16 16 N 1.46501 * 109.47066 * 55.00154 * 15 13 11 17 17 C 1.36936 * 120.00112 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00271 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00176 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99856 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47310 * 90.00299 * 21 19 17 23 23 H 1.48496 * 109.47208 * 210.00151 * 21 19 17 24 24 H 1.48506 * 109.47167 * 330.00151 * 21 19 17 25 25 C 1.53004 * 109.46876 * 119.99997 * 13 11 9 26 26 C 1.52994 * 117.49873 * 248.74365 * 25 13 11 27 27 C 1.53006 * 117.49658 * 180.08481 * 25 13 11 28 28 C 1.38360 * 120.34533 * 89.99974 * 4 3 2 29 29 H 1.09001 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46502 * 299.99554 * 1 2 3 31 31 H 1.09000 * 109.47174 * 59.99464 * 1 2 3 32 32 H 1.08996 * 109.47605 * 60.00329 * 3 2 1 33 33 H 1.09005 * 109.47458 * 300.00090 * 3 2 1 34 34 H 1.08001 * 119.46230 * 0.03923 * 5 4 3 35 35 H 1.08002 * 119.71409 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47450 * 84.95826 * 12 11 9 37 37 H 1.09003 * 109.47136 * 204.96282 * 12 11 9 38 38 H 1.09000 * 109.46790 * 324.95627 * 12 11 9 39 39 H 1.08996 * 109.47342 * 175.00180 * 15 13 11 40 40 H 1.09001 * 109.47373 * 295.00528 * 15 13 11 41 41 H 0.96997 * 120.00035 * 359.97438 * 16 15 13 42 42 H 0.97002 * 119.99713 * 180.02562 * 20 19 17 43 43 H 1.09000 * 115.54886 * 34.41956 * 25 13 11 44 44 H 1.09004 * 117.50031 * 0.02562 * 26 25 13 45 45 H 1.09009 * 117.49656 * 145.01848 * 26 25 13 46 46 H 1.08996 * 117.49609 * 214.97850 * 27 25 13 47 47 H 1.08999 * 117.49944 * 359.97438 * 27 25 13 48 48 H 1.07997 * 120.85990 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2099 1.1315 1.1930 6 7 5.5250 1.0278 1.2092 7 6 6.2321 0.9726 0.0995 8 6 5.6040 1.0222 -1.1452 9 6 6.3979 0.9608 -2.3908 10 8 5.9822 0.3349 -3.3463 11 7 7.5827 1.5988 -2.4669 12 6 8.1340 2.2635 -1.2835 13 6 8.3192 1.6276 -3.7330 14 1 7.7568 1.0850 -4.4928 15 6 9.6868 0.9688 -3.5425 16 7 9.5077 -0.3809 -3.0015 17 6 10.5996 -1.1668 -2.7464 18 1 11.5929 -0.7920 -2.9444 19 6 10.4298 -2.4458 -2.2343 20 7 11.4794 -3.2011 -1.9886 21 14 8.7117 -3.0946 -1.8925 22 1 8.1910 -3.7789 -3.1032 23 1 8.7617 -4.0571 -0.7629 24 1 7.8166 -1.9634 -1.5397 25 6 8.5098 3.0786 -4.1792 26 6 7.7467 3.5416 -5.4219 27 6 9.2600 3.3217 -5.4904 28 6 4.2088 1.1315 -1.1950 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6689 1.1738 2.1267 35 1 7.3075 0.8883 0.1536 36 1 8.6810 1.5382 -0.6811 37 1 8.8097 3.0598 -1.5957 38 1 7.3216 2.6871 -0.6931 39 1 10.1989 0.9102 -4.5029 40 1 10.2825 1.5621 -2.8488 41 1 8.6156 -0.7175 -2.8233 42 1 11.3607 -4.0950 -1.6311 43 1 8.6513 3.8025 -3.3767 44 1 7.1085 2.8125 -5.9213 45 1 7.3864 4.5703 -5.4370 46 1 9.8946 4.2058 -5.5506 47 1 9.6181 2.4480 -6.0348 48 1 3.6899 1.1731 -2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755560593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:59 Heat of formation + Delta-G solvation = -8.845986 kcal Electronic energy + Delta-G solvation = -29341.965509 eV Core-core repulsion = 25398.272758 eV Total energy + Delta-G solvation = -3943.692752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08101 -40.69391 -38.88852 -38.65981 -36.75937 -36.03847 -34.14762 -33.76012 -32.95671 -30.24413 -28.57197 -28.00401 -26.47967 -26.39879 -25.13388 -23.79997 -23.49069 -22.84424 -21.53663 -20.66967 -19.61621 -18.70939 -18.22305 -17.84502 -17.66590 -17.40168 -16.73363 -16.61753 -16.37438 -16.01653 -15.93896 -15.72631 -15.11258 -14.98194 -14.81568 -14.66890 -14.42550 -14.24609 -13.98122 -13.78162 -13.61317 -13.38215 -13.12692 -13.08622 -12.89893 -12.80547 -12.40381 -12.37230 -12.27628 -12.14121 -11.89376 -11.50917 -11.24294 -11.08167 -11.02733 -10.93773 -10.74772 -10.54369 -10.22187 -9.75579 -9.34702 -8.10086 -5.40274 -0.45343 -0.04994 1.23949 1.29279 1.32592 1.51717 1.76764 2.36908 2.44086 2.85056 3.03301 3.17851 3.22748 3.38961 3.45262 3.65857 3.69101 3.79078 3.88703 3.95623 3.97580 4.02189 4.17497 4.21259 4.27220 4.35106 4.43220 4.50502 4.52172 4.54316 4.60314 4.62447 4.75819 4.80282 4.84927 4.88089 4.88365 4.98106 5.02931 5.06107 5.20035 5.29140 5.38886 5.49903 5.71263 6.15151 6.16792 6.18864 6.68377 6.91580 7.00911 7.78416 7.95504 9.11579 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.004175 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.583097 B = 6704.928165 C = 8512.265843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.109 3.891 4 C -0.148 4.148 5 C 0.140 3.860 6 N -0.500 5.500 7 C 0.128 3.872 8 C -0.196 4.196 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.587 5.587 12 C 0.066 3.934 13 C 0.167 3.833 14 H 0.075 0.925 15 C 0.150 3.850 16 N -0.758 5.758 17 C -0.222 4.222 18 H 0.071 0.929 19 C -0.048 4.048 20 N -0.975 5.975 21 Si 0.936 3.064 22 H -0.290 1.290 23 H -0.288 1.288 24 H -0.273 1.273 25 C -0.166 4.166 26 C -0.171 4.171 27 C -0.162 4.162 28 C -0.009 4.009 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.194 0.806 35 H 0.170 0.830 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.045 0.955 41 H 0.359 0.641 42 H 0.258 0.742 43 H 0.130 0.870 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.767 20.383 3.875 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.033 3.967 4 C -0.150 4.150 5 C -0.017 4.017 6 N -0.207 5.207 7 C -0.029 4.029 8 C -0.201 4.201 9 C 0.346 3.654 10 O -0.457 6.457 11 N -0.317 5.317 12 C -0.075 4.075 13 C 0.063 3.937 14 H 0.093 0.907 15 C 0.023 3.977 16 N -0.403 5.403 17 C -0.353 4.353 18 H 0.088 0.912 19 C -0.240 4.240 20 N -0.626 5.626 21 Si 0.766 3.234 22 H -0.217 1.217 23 H -0.215 1.215 24 H -0.199 1.199 25 C -0.185 4.185 26 C -0.208 4.208 27 C -0.199 4.199 28 C -0.036 4.036 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.211 0.789 35 H 0.186 0.814 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.191 0.809 42 H 0.067 0.933 43 H 0.147 0.853 44 H 0.098 0.902 45 H 0.133 0.867 46 H 0.138 0.862 47 H 0.105 0.895 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.181 19.837 4.194 28.607 hybrid contribution -1.101 -1.124 -0.755 1.745 sum -21.281 18.713 3.438 28.547 Atomic orbital electron populations 1.22951 0.78872 1.03740 1.01465 1.87954 1.21915 1.28240 1.95737 1.21354 0.86514 0.85213 1.03652 1.20810 0.97435 1.03483 0.93248 1.23496 0.89411 0.89832 0.98964 1.67881 1.09038 1.13519 1.30312 1.23570 1.01462 0.91293 0.86580 1.20869 0.95680 1.09123 0.94441 1.18468 0.81402 0.78404 0.87146 1.90754 1.71751 1.43263 1.39972 1.47665 1.19037 1.52654 1.12341 1.22321 1.00281 0.98129 0.86794 1.20835 0.91859 0.95681 0.85305 0.90677 1.21136 0.94779 0.84338 0.97428 1.42754 1.04294 1.14459 1.78778 1.19063 0.87975 0.94894 1.33323 0.91154 1.25172 0.99017 0.97315 1.02528 1.69816 1.29474 1.10452 1.52888 0.85723 0.82060 0.78243 0.77423 1.21708 1.21465 1.19938 1.22427 1.07707 0.94898 0.93458 1.23061 0.94780 1.02866 1.00055 1.23031 0.94727 1.03951 0.98203 1.21681 0.91526 0.90498 0.99858 0.89289 0.91967 0.92909 0.88661 0.90642 0.78877 0.81364 0.92457 0.87836 0.89342 0.94223 0.93664 0.80860 0.93267 0.85257 0.90207 0.86682 0.86193 0.89487 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.97 10.69 -148.98 -1.59 -9.56 16 3 C 0.11 1.53 6.08 71.24 0.43 1.97 16 4 C -0.15 -2.99 5.52 -19.81 -0.11 -3.10 16 5 C 0.14 2.84 10.85 84.70 0.92 3.76 16 6 N -0.50 -13.07 10.35 -194.76 -2.01 -15.09 16 7 C 0.13 3.65 8.76 85.02 0.74 4.39 16 8 C -0.20 -5.89 5.26 -19.99 -0.11 -5.99 16 9 C 0.56 19.71 7.08 86.78 0.61 20.33 16 10 O -0.58 -24.79 16.27 -3.89 -0.06 -24.85 16 11 N -0.59 -18.10 2.24 -826.00 -1.85 -19.96 16 12 C 0.07 1.56 7.95 127.77 1.02 2.58 16 13 C 0.17 5.27 2.41 44.99 0.11 5.38 16 14 H 0.08 2.82 6.67 -2.39 -0.02 2.80 16 15 C 0.15 5.67 5.32 86.38 0.46 6.13 16 16 N -0.76 -37.30 5.24 -343.46 -1.80 -39.10 16 17 C -0.22 -12.91 10.47 84.03 0.88 -12.03 16 18 H 0.07 4.35 8.06 -2.91 -0.02 4.33 16 19 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 20 N -0.98 -63.80 13.97 21.65 0.30 -63.50 16 21 Si 0.94 50.47 27.74 68.60 1.90 52.38 16 22 H -0.29 -15.83 7.11 99.48 0.71 -15.13 16 23 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 24 H -0.27 -14.30 6.52 99.48 0.65 -13.65 16 25 C -0.17 -3.71 5.12 -10.79 -0.06 -3.77 16 26 C -0.17 -3.42 10.18 30.62 0.31 -3.10 16 27 C -0.16 -3.21 9.80 30.62 0.30 -2.91 16 28 C -0.01 -0.24 9.47 22.73 0.22 -0.02 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.08 0.85 8.09 -2.38 -0.02 0.83 16 34 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.17 4.81 5.25 -2.91 -0.02 4.79 16 36 H 0.06 1.54 6.87 -2.39 -0.02 1.52 16 37 H 0.10 1.89 6.50 -2.39 -0.02 1.88 16 38 H 0.09 1.74 5.84 -2.39 -0.01 1.73 16 39 H 0.04 1.52 7.47 -2.39 -0.02 1.50 16 40 H 0.05 1.62 7.84 -2.39 -0.02 1.60 16 41 H 0.36 18.35 4.93 -92.71 -0.46 17.89 16 42 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 43 H 0.13 2.35 6.66 -2.39 -0.02 2.34 16 44 H 0.08 1.86 8.05 -2.39 -0.02 1.84 16 45 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.09 1.98 7.66 -2.39 -0.02 1.96 16 48 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -80.77 391.13 2.79 -77.97 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.46 Total: 29.05 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 7.45 Total: 12.66 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -5.37 Total: -137.64 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -1.66 Total: -34.42 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.90 Total: 52.38 kcal Total: -80.77 2.79 -77.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755560593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.126 kcal (2) G-P(sol) polarization free energy of solvation -80.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds