Wall clock time and date at job start Tue Mar 31 2020 17:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00075 * 2 1 4 4 O 1.21279 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99867 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47009 * 179.97438 * 5 3 2 7 7 N 1.46507 * 109.47241 * 180.02562 * 6 5 3 8 8 C 1.35763 * 119.62574 * 90.00014 * 7 6 5 9 9 C 1.35346 * 120.69997 * 180.27933 * 8 7 6 10 10 C 1.40202 * 119.94860 * 359.43664 * 9 8 7 11 11 C 1.36395 * 119.26120 * 0.57668 * 10 9 8 12 12 C 1.34664 * 119.61981 * 270.02413 * 7 6 5 13 13 O 1.22055 * 119.98569 * 359.97438 * 12 7 6 14 14 C 1.46498 * 120.00213 * 179.97438 * 2 1 3 15 15 H 1.08998 * 109.47312 * 180.02562 * 14 2 1 16 16 C 1.53006 * 109.47217 * 300.00517 * 14 2 1 17 17 N 1.46501 * 109.46761 * 305.00017 * 16 14 2 18 18 C 1.36938 * 119.99890 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99792 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00084 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46945 * 119.99719 * 22 20 18 25 25 H 1.48499 * 109.46889 * 239.99512 * 22 20 18 26 26 C 1.53000 * 109.46989 * 59.99968 * 14 2 1 27 27 C 1.52995 * 117.50117 * 248.74640 * 26 14 2 28 28 C 1.53005 * 117.49672 * 180.08779 * 26 14 2 29 29 H 1.08998 * 109.47057 * 90.00295 * 1 2 3 30 30 H 1.08999 * 109.47350 * 210.00226 * 1 2 3 31 31 H 1.08994 * 109.47329 * 330.00243 * 1 2 3 32 32 H 1.09004 * 109.46770 * 60.00416 * 5 3 2 33 33 H 1.08991 * 109.47572 * 300.00317 * 5 3 2 34 34 H 1.08991 * 109.47264 * 60.00383 * 6 5 3 35 35 H 1.09001 * 109.47142 * 300.00018 * 6 5 3 36 36 H 1.08002 * 119.64669 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.02410 * 179.69320 * 9 8 7 38 38 H 1.08002 * 120.36615 * 180.31976 * 10 9 8 39 39 H 1.08002 * 120.34395 * 179.74309 * 11 10 9 40 40 H 1.08996 * 109.47179 * 64.99528 * 16 14 2 41 41 H 1.09000 * 109.47523 * 184.99876 * 16 14 2 42 42 H 0.97000 * 120.00191 * 359.97438 * 17 16 14 43 43 H 0.96998 * 120.00145 * 180.02562 * 21 20 18 44 44 H 1.08996 * 115.55077 * 34.42339 * 26 14 2 45 45 H 1.09000 * 117.50092 * 0.02562 * 27 26 14 46 46 H 1.09005 * 117.50000 * 145.02376 * 27 26 14 47 47 H 1.09001 * 117.49298 * 214.98037 * 28 26 14 48 48 H 1.08999 * 117.49858 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 7 1.6471 4.9040 0.0002 8 6 1.3110 5.4849 1.1804 9 6 0.6295 6.6540 1.2058 10 6 0.2740 7.2831 0.0044 11 6 0.6121 6.6977 -1.1802 12 6 1.3144 5.4805 -1.1704 13 8 1.6236 4.9460 -2.2232 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0695 0.0009 16 6 1.8278 -2.0705 1.2501 17 7 2.0705 -1.2553 2.4429 18 6 1.8111 -1.7670 3.6863 19 1 1.4272 -2.7714 3.7876 20 6 2.0405 -0.9944 4.8165 21 7 2.5079 0.2299 4.6931 22 14 1.6873 -1.6926 6.5127 23 1 1.1730 -3.0793 6.3800 24 1 2.9374 -1.7024 7.3142 25 1 0.6701 -0.8509 7.1925 26 6 1.8279 -2.0715 -1.2483 27 6 1.0116 -3.3503 -1.0502 28 6 2.4914 -3.4380 -1.4317 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 0.7584 2.5302 0.8892 33 1 0.7590 2.5299 -0.8907 34 1 3.0068 3.5775 -0.8893 35 1 3.0056 3.5774 0.8907 36 1 1.5862 5.0065 2.1088 37 1 0.3635 7.1039 2.1509 38 1 -0.2654 8.2187 0.0169 39 1 0.3433 7.1650 -2.1161 40 1 0.7741 -2.3459 1.2066 41 1 2.4376 -2.9728 1.2965 42 1 2.4157 -0.3534 2.3520 43 1 2.6686 0.7696 5.4828 44 1 1.6318 -1.4830 -2.1445 45 1 0.7374 -3.6194 -0.0302 46 1 0.2786 -3.6032 -1.8163 47 1 2.7313 -3.7485 -2.4486 48 1 3.1909 -3.7651 -0.6624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755561874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:45 Heat of formation + Delta-G solvation = 13.073701 kcal Electronic energy + Delta-G solvation = -29230.575483 eV Core-core repulsion = 25287.833241 eV Total energy + Delta-G solvation = -3942.742243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42625 -39.91356 -37.85143 -36.94005 -35.17709 -34.93339 -34.04947 -31.55910 -30.81116 -29.87998 -28.20074 -26.51517 -25.35073 -24.21902 -23.69208 -22.57401 -22.25796 -21.90065 -19.85522 -18.52493 -17.84093 -17.38957 -17.13867 -16.70935 -16.37473 -16.14864 -15.70870 -15.59202 -14.93600 -14.48729 -14.48152 -14.35446 -14.15682 -13.67341 -13.29725 -13.11223 -12.90814 -12.65043 -12.56598 -12.47113 -12.20299 -12.06674 -12.02330 -11.73148 -11.51431 -11.33315 -11.17293 -11.05175 -10.84986 -10.76800 -10.33770 -10.28004 -10.09928 -9.98555 -9.78620 -9.74957 -9.41313 -8.91402 -8.28661 -8.08308 -6.94973 -5.79833 -3.08439 0.71757 1.77413 2.51121 2.94343 3.26119 3.39073 3.45313 3.47082 3.57228 3.98208 4.50932 4.54412 4.56257 4.73981 4.78850 4.84853 4.87551 5.05015 5.08814 5.11251 5.13736 5.20909 5.29607 5.40438 5.50161 5.51948 5.60977 5.69060 5.75683 5.82553 5.84270 5.87679 5.92301 5.96487 6.00149 6.03687 6.13407 6.26276 6.26982 6.37152 6.41411 6.45502 6.66519 6.94123 7.01903 7.65447 7.69670 7.96859 8.38290 8.47738 9.50226 10.08123 10.43987 11.42647 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.003759 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.497312 B = 7446.221506 C = 9905.421188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.592 5.592 3 C 0.526 3.474 4 O -0.540 6.540 5 C -0.151 4.151 6 C 0.105 3.895 7 N -0.493 5.493 8 C 0.143 3.857 9 C -0.241 4.241 10 C -0.015 4.015 11 C -0.252 4.252 12 C 0.510 3.490 13 O -0.554 6.554 14 C 0.161 3.839 15 H 0.104 0.896 16 C 0.143 3.857 17 N -0.727 5.727 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.158 4.158 27 C -0.183 4.183 28 C -0.173 4.173 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.386 0.614 43 H 0.253 0.747 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 8.417 -10.541 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.324 5.324 3 C 0.314 3.686 4 O -0.417 6.417 5 C -0.191 4.191 6 C -0.016 4.016 7 N -0.202 5.202 8 C 0.015 3.985 9 C -0.264 4.264 10 C -0.036 4.036 11 C -0.273 4.273 12 C 0.312 3.688 13 O -0.436 6.436 14 C 0.058 3.942 15 H 0.122 0.878 16 C 0.015 3.985 17 N -0.372 5.372 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.178 4.178 27 C -0.220 4.220 28 C -0.211 4.211 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.220 0.780 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.130 7.914 -11.095 14.943 hybrid contribution -0.343 -0.019 1.139 1.189 sum -6.473 7.895 -9.956 14.260 Atomic orbital electron populations 1.21696 0.79720 1.03838 1.00700 1.47551 1.06882 1.05397 1.72583 1.20109 0.87786 0.84937 0.75809 1.90707 1.13735 1.87211 1.50036 1.21915 0.99646 0.92540 1.05029 1.21785 0.93789 0.79271 1.06799 1.45665 1.46427 1.21319 1.06832 1.22184 0.92812 0.93584 0.89928 1.20663 1.08278 0.97929 0.99578 1.21438 0.92345 0.97836 0.92014 1.22098 1.07605 0.97645 0.99989 1.17204 0.81873 0.86823 0.82873 1.90964 1.57065 1.66024 1.29579 1.20834 0.97952 0.82387 0.93037 0.87799 1.21118 0.97741 0.93582 0.86108 1.42306 1.78755 1.15770 1.00337 1.19255 1.36036 0.98009 0.83663 0.91256 1.24717 1.02063 0.96332 0.97705 1.69688 1.51236 1.08764 1.28204 0.86146 0.77409 0.77995 0.84809 1.20607 1.21870 1.21934 1.22576 1.05587 0.90102 0.99520 1.23187 0.94013 1.01485 1.03336 1.22955 0.96104 0.99564 1.02452 0.93252 0.90269 0.91468 0.88077 0.88527 0.87384 0.87640 0.81604 0.83759 0.85012 0.83729 0.95592 0.95426 0.78023 0.93671 0.87943 0.87541 0.89304 0.89056 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 9.61 59.85 0.58 1.69 16 2 N -0.59 -9.65 2.24 -173.94 -0.39 -10.04 16 3 C 0.53 9.15 7.38 -10.99 -0.08 9.06 16 4 O -0.54 -11.20 15.31 5.56 0.09 -11.12 16 5 C -0.15 -2.08 4.58 -27.88 -0.13 -2.21 16 6 C 0.11 1.44 4.62 -4.04 -0.02 1.42 16 7 N -0.49 -6.06 2.58 -119.77 -0.31 -6.37 16 8 C 0.14 1.37 10.28 -16.84 -0.17 1.19 16 9 C -0.24 -1.94 10.01 -39.88 -0.40 -2.34 16 10 C -0.01 -0.12 10.10 -39.51 -0.40 -0.52 16 11 C -0.25 -2.75 9.99 -39.38 -0.39 -3.15 16 12 C 0.51 7.19 7.41 -15.44 -0.11 7.07 16 13 O -0.55 -9.87 16.64 4.87 0.08 -9.79 16 14 C 0.16 2.76 2.59 -67.93 -0.18 2.59 16 15 H 0.10 2.06 6.90 -51.93 -0.36 1.70 16 16 C 0.14 2.80 4.14 -4.04 -0.02 2.78 16 17 N -0.73 -18.13 5.43 -59.90 -0.33 -18.46 16 18 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 22 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C -0.16 -2.17 5.48 -90.62 -0.50 -2.66 16 27 C -0.18 -2.22 9.59 -26.70 -0.26 -2.48 16 28 C -0.17 -2.13 9.94 -26.69 -0.27 -2.40 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.12 6.53 -51.93 -0.34 0.78 16 31 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.10 1.31 7.40 -51.93 -0.38 0.92 16 33 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 34 H 0.11 1.68 7.35 -51.93 -0.38 1.30 16 35 H 0.11 1.42 7.97 -51.93 -0.41 1.01 16 36 H 0.17 1.30 8.04 -52.49 -0.42 0.88 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.03 0.50 5.34 -51.93 -0.28 0.22 16 41 H 0.03 0.56 7.44 -51.93 -0.39 0.17 16 42 H 0.39 10.38 7.06 -40.82 -0.29 10.10 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 44 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.11 1.41 5.80 -51.93 -0.30 1.10 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.10 1.28 7.65 -51.93 -0.40 0.88 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -34.86 392.25 -9.05 -43.90 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -7.21 Total: 12.82 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.59 Total: 2.93 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.30 Total: -61.60 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.17 Total: -20.91 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.86 -9.05 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.975 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds