Wall clock time and date at job start Tue Mar 31 2020 17:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00075 * 2 1 4 4 O 1.21279 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99867 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47009 * 179.97438 * 5 3 2 7 7 N 1.46507 * 109.47241 * 180.02562 * 6 5 3 8 8 C 1.35763 * 119.62574 * 90.00014 * 7 6 5 9 9 C 1.35346 * 120.69997 * 180.27933 * 8 7 6 10 10 C 1.40202 * 119.94860 * 359.43664 * 9 8 7 11 11 C 1.36395 * 119.26120 * 0.57668 * 10 9 8 12 12 C 1.34664 * 119.61981 * 270.02413 * 7 6 5 13 13 O 1.22055 * 119.98569 * 359.97438 * 12 7 6 14 14 C 1.46498 * 120.00213 * 179.97438 * 2 1 3 15 15 H 1.08998 * 109.47312 * 180.02562 * 14 2 1 16 16 C 1.53006 * 109.47217 * 300.00517 * 14 2 1 17 17 N 1.46501 * 109.46761 * 305.00017 * 16 14 2 18 18 C 1.36938 * 119.99890 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99792 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00084 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46945 * 119.99719 * 22 20 18 25 25 H 1.48499 * 109.46889 * 239.99512 * 22 20 18 26 26 C 1.53000 * 109.46989 * 59.99968 * 14 2 1 27 27 C 1.52995 * 117.50117 * 248.74640 * 26 14 2 28 28 C 1.53005 * 117.49672 * 180.08779 * 26 14 2 29 29 H 1.08998 * 109.47057 * 90.00295 * 1 2 3 30 30 H 1.08999 * 109.47350 * 210.00226 * 1 2 3 31 31 H 1.08994 * 109.47329 * 330.00243 * 1 2 3 32 32 H 1.09004 * 109.46770 * 60.00416 * 5 3 2 33 33 H 1.08991 * 109.47572 * 300.00317 * 5 3 2 34 34 H 1.08991 * 109.47264 * 60.00383 * 6 5 3 35 35 H 1.09001 * 109.47142 * 300.00018 * 6 5 3 36 36 H 1.08002 * 119.64669 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.02410 * 179.69320 * 9 8 7 38 38 H 1.08002 * 120.36615 * 180.31976 * 10 9 8 39 39 H 1.08002 * 120.34395 * 179.74309 * 11 10 9 40 40 H 1.08996 * 109.47179 * 64.99528 * 16 14 2 41 41 H 1.09000 * 109.47523 * 184.99876 * 16 14 2 42 42 H 0.97000 * 120.00191 * 359.97438 * 17 16 14 43 43 H 0.96998 * 120.00145 * 180.02562 * 21 20 18 44 44 H 1.08996 * 115.55077 * 34.42339 * 26 14 2 45 45 H 1.09000 * 117.50092 * 0.02562 * 27 26 14 46 46 H 1.09005 * 117.50000 * 145.02376 * 27 26 14 47 47 H 1.09001 * 117.49298 * 214.98037 * 28 26 14 48 48 H 1.08999 * 117.49858 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 7 1.6471 4.9040 0.0002 8 6 1.3110 5.4849 1.1804 9 6 0.6295 6.6540 1.2058 10 6 0.2740 7.2831 0.0044 11 6 0.6121 6.6977 -1.1802 12 6 1.3144 5.4805 -1.1704 13 8 1.6236 4.9460 -2.2232 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0695 0.0009 16 6 1.8278 -2.0705 1.2501 17 7 2.0705 -1.2553 2.4429 18 6 1.8111 -1.7670 3.6863 19 1 1.4272 -2.7714 3.7876 20 6 2.0405 -0.9944 4.8165 21 7 2.5079 0.2299 4.6931 22 14 1.6873 -1.6926 6.5127 23 1 1.1730 -3.0793 6.3800 24 1 2.9374 -1.7024 7.3142 25 1 0.6701 -0.8509 7.1925 26 6 1.8279 -2.0715 -1.2483 27 6 1.0116 -3.3503 -1.0502 28 6 2.4914 -3.4380 -1.4317 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 0.7584 2.5302 0.8892 33 1 0.7590 2.5299 -0.8907 34 1 3.0068 3.5775 -0.8893 35 1 3.0056 3.5774 0.8907 36 1 1.5862 5.0065 2.1088 37 1 0.3635 7.1039 2.1509 38 1 -0.2654 8.2187 0.0169 39 1 0.3433 7.1650 -2.1161 40 1 0.7741 -2.3459 1.2066 41 1 2.4376 -2.9728 1.2965 42 1 2.4157 -0.3534 2.3520 43 1 2.6686 0.7696 5.4828 44 1 1.6318 -1.4830 -2.1445 45 1 0.7374 -3.6194 -0.0302 46 1 0.2786 -3.6032 -1.8163 47 1 2.7313 -3.7485 -2.4486 48 1 3.1909 -3.7651 -0.6624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755561874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:44 Heat of formation + Delta-G solvation = -8.510691 kcal Electronic energy + Delta-G solvation = -29231.511453 eV Core-core repulsion = 25287.833241 eV Total energy + Delta-G solvation = -3943.678212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38278 -41.24115 -39.11839 -37.95952 -36.44161 -36.03305 -35.78842 -33.20417 -32.18570 -30.75251 -29.69213 -27.77141 -26.69622 -25.64519 -24.62039 -24.06244 -23.23585 -23.05616 -21.11627 -19.95137 -19.06396 -18.89189 -18.29638 -17.79727 -17.66202 -17.15125 -16.89973 -16.80231 -16.37911 -16.02548 -15.65141 -15.34907 -15.11114 -15.07956 -14.80986 -14.72403 -14.35899 -13.86628 -13.83524 -13.62832 -13.25370 -13.19178 -13.06302 -12.92888 -12.82587 -12.74526 -12.65904 -12.37085 -12.27786 -12.23180 -11.98078 -11.76221 -11.41290 -11.17954 -11.00807 -10.99180 -10.95766 -10.69239 -9.61394 -8.99324 -8.97239 -7.93214 -5.22717 -0.06537 0.93048 1.47017 1.48527 1.50319 1.57839 1.58677 2.05279 2.55413 2.69665 2.92128 3.39827 3.46957 3.60779 3.65853 3.70797 3.84458 3.95175 3.99716 4.06537 4.12994 4.17580 4.22499 4.25894 4.31921 4.37432 4.42258 4.46604 4.58129 4.65223 4.72685 4.75567 4.81003 4.86053 4.97471 5.04044 5.09198 5.12814 5.21279 5.22563 5.31314 5.40620 5.48785 5.59719 5.66583 6.12324 6.27270 6.38590 6.98314 7.12653 7.34168 8.07732 8.32919 9.30100 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.003759 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.497312 B = 7446.221506 C = 9905.421188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.515 3.485 4 O -0.584 6.584 5 C -0.134 4.134 6 C 0.113 3.887 7 N -0.491 5.491 8 C 0.122 3.878 9 C -0.223 4.223 10 C 0.009 3.991 11 C -0.276 4.276 12 C 0.492 3.508 13 O -0.611 6.611 14 C 0.168 3.832 15 H 0.068 0.932 16 C 0.147 3.853 17 N -0.740 5.740 18 C -0.244 4.244 19 H 0.075 0.925 20 C -0.070 4.070 21 N -0.965 5.965 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.298 1.298 25 H -0.290 1.290 26 C -0.166 4.166 27 C -0.166 4.166 28 C -0.170 4.170 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.043 0.957 41 H 0.025 0.975 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 8.750 -9.906 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.324 5.324 3 C 0.304 3.696 4 O -0.465 6.465 5 C -0.175 4.175 6 C -0.010 4.010 7 N -0.200 5.200 8 C -0.004 4.004 9 C -0.245 4.245 10 C -0.013 4.013 11 C -0.297 4.297 12 C 0.298 3.702 13 O -0.498 6.498 14 C 0.064 3.936 15 H 0.086 0.914 16 C 0.020 3.980 17 N -0.382 5.382 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.262 4.262 21 N -0.615 5.615 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.225 1.225 25 H -0.217 1.217 26 C -0.186 4.186 27 C -0.203 4.203 28 C -0.208 4.208 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.190 0.810 39 H 0.168 0.832 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.129 0.871 45 H 0.114 0.886 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.746 8.220 -10.446 15.912 hybrid contribution 0.442 -0.108 0.988 1.087 sum -8.304 8.112 -9.459 14.974 Atomic orbital electron populations 1.21894 0.77650 1.04004 1.02636 1.47686 1.08172 1.04813 1.71683 1.20736 0.87550 0.86252 0.75074 1.90677 1.15742 1.87905 1.52163 1.21798 0.99228 0.90567 1.05883 1.21521 0.93750 0.80389 1.05305 1.45570 1.46205 1.20694 1.07566 1.22651 0.93770 0.94654 0.89360 1.21178 1.05753 0.96547 1.01036 1.21887 0.90241 0.98442 0.90707 1.22143 1.08833 0.96999 1.01721 1.17765 0.82157 0.87768 0.82518 1.90920 1.59876 1.67674 1.31369 1.20590 0.96216 0.83053 0.93712 0.91404 1.21236 0.98313 0.93081 0.85399 1.42488 1.78706 1.15682 1.01353 1.19631 1.35028 0.98151 0.84785 0.90675 1.25506 1.02663 0.96786 1.01285 1.69843 1.52773 1.10042 1.28868 0.85110 0.76748 0.77902 0.80181 1.19194 1.22532 1.21669 1.22402 1.07719 0.90506 0.97968 1.23208 0.94344 0.99173 1.03545 1.23046 0.96251 0.98050 1.03426 0.90370 0.90821 0.90544 0.86748 0.87647 0.90050 0.87923 0.80099 0.80261 0.80976 0.83156 0.93965 0.95724 0.79569 0.94052 0.87096 0.88643 0.86641 0.86800 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 9.61 127.77 1.23 3.27 16 2 N -0.59 -19.58 2.24 -822.61 -1.85 -21.43 16 3 C 0.52 18.72 7.38 87.66 0.65 19.36 16 4 O -0.58 -26.01 15.31 -3.03 -0.05 -26.06 16 5 C -0.13 -3.83 4.58 29.85 0.14 -3.69 16 6 C 0.11 3.29 4.62 86.38 0.40 3.69 16 7 N -0.49 -12.28 2.58 -650.97 -1.68 -13.96 16 8 C 0.12 2.15 10.28 83.42 0.86 3.01 16 9 C -0.22 -2.81 10.01 22.08 0.22 -2.59 16 10 C 0.01 0.12 10.10 22.32 0.23 0.34 16 11 C -0.28 -5.77 9.99 22.40 0.22 -5.55 16 12 C 0.49 14.29 7.41 84.82 0.63 14.92 16 13 O -0.61 -23.20 16.64 -5.49 -0.09 -23.30 16 14 C 0.17 5.89 2.59 44.99 0.12 6.01 16 15 H 0.07 2.87 6.90 -2.39 -0.02 2.85 16 16 C 0.15 5.79 4.14 86.38 0.36 6.14 16 17 N -0.74 -37.53 5.43 -343.44 -1.87 -39.39 16 18 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.96 -57.81 13.06 21.65 0.28 -57.53 16 22 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 C -0.17 -4.40 5.48 -10.79 -0.06 -4.46 16 27 C -0.17 -3.65 9.59 30.62 0.29 -3.35 16 28 C -0.17 -3.96 9.94 30.62 0.30 -3.65 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.97 6.53 -2.39 -0.02 1.95 16 31 H 0.08 1.80 6.44 -2.39 -0.02 1.78 16 32 H 0.11 2.93 7.40 -2.39 -0.02 2.91 16 33 H 0.11 2.82 8.11 -2.39 -0.02 2.80 16 34 H 0.08 2.81 7.35 -2.39 -0.02 2.79 16 35 H 0.10 2.99 7.97 -2.39 -0.02 2.97 16 36 H 0.18 2.57 8.04 -2.91 -0.02 2.55 16 37 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.04 1.56 5.34 -2.39 -0.01 1.55 16 41 H 0.03 1.00 7.44 -2.39 -0.02 0.98 16 42 H 0.37 20.72 7.06 -92.71 -0.65 20.07 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.10 2.34 5.80 -2.39 -0.01 2.32 16 46 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 47 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.09 2.22 7.65 -2.39 -0.02 2.20 16 Total: -1.00 -79.40 392.25 3.98 -75.42 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: 0.32 Total: 41.66 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.89 Total: 17.41 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -5.11 Total: -132.31 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.14 Total: -49.36 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.40 3.98 -75.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.905 kcal (2) G-P(sol) polarization free energy of solvation -79.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds