Wall clock time and date at job start Tue Mar 31 2020 17:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35913 * 117.00059 * 2 1 4 4 C 1.39135 * 120.47583 * 179.97438 * 3 2 1 5 5 C 1.38530 * 118.37368 * 179.97438 * 4 3 2 6 6 C 1.38257 * 119.22679 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.56142 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46617 * 125.00075 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 H 1.08998 * 110.01995 * 33.60961 * 11 10 8 13 13 C 1.54265 * 110.02856 * 272.16255 * 11 10 8 14 14 C 1.54885 * 104.19613 * 217.10664 * 13 11 10 15 15 C 1.54890 * 102.75089 * 37.94659 * 14 13 11 16 16 H 1.08999 * 110.48298 * 80.73356 * 15 14 13 17 17 C 1.52996 * 110.60027 * 203.32352 * 15 14 13 18 18 N 1.46492 * 109.47141 * 289.83688 * 17 15 14 19 19 C 1.36941 * 120.00064 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99940 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47333 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47094 * 119.99874 * 23 21 19 26 26 H 1.48501 * 109.47422 * 240.00065 * 23 21 19 27 27 C 1.53878 * 110.03172 * 155.00162 * 11 10 8 28 28 N 1.31846 * 120.88251 * 0.25563 * 6 5 4 29 29 C 1.31846 * 121.77784 * 359.47487 * 28 6 5 30 30 H 1.09002 * 109.47559 * 300.00281 * 1 2 3 31 31 H 1.08998 * 109.47116 * 60.00735 * 1 2 3 32 32 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.81077 * 359.95829 * 4 3 2 34 34 H 1.08003 * 120.38742 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46798 * 5.00966 * 7 6 5 36 36 H 1.08993 * 109.47546 * 245.00518 * 7 6 5 37 37 H 0.97005 * 119.99846 * 359.72750 * 10 8 7 38 38 H 1.08997 * 110.49360 * 335.78854 * 13 11 10 39 39 H 1.09008 * 110.48356 * 98.42938 * 13 11 10 40 40 H 1.09003 * 110.75856 * 279.63206 * 14 13 11 41 41 H 1.09004 * 110.91771 * 156.33281 * 14 13 11 42 42 H 1.09003 * 109.47324 * 49.84173 * 17 15 14 43 43 H 1.09006 * 109.46849 * 169.83930 * 17 15 14 44 44 H 0.97005 * 120.00605 * 0.02562 * 18 17 15 45 45 H 0.96998 * 120.00493 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.02794 * 238.56664 * 27 11 10 47 47 H 1.09002 * 110.03146 * 359.97438 * 27 11 10 48 48 H 1.08006 * 119.65755 * 180.26937 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0180 2.5519 0.0000 6 6 3.2078 3.6722 -0.0006 7 6 3.8343 5.0428 -0.0006 8 6 3.3023 5.8381 -1.1648 9 8 2.4977 5.3393 -1.9230 10 7 3.7251 7.1018 -1.3670 11 6 3.2124 7.8730 -2.5022 12 1 2.1767 7.5987 -2.7023 13 6 4.0796 7.6142 -3.7515 14 6 4.1380 8.9879 -4.4646 15 6 4.2338 9.9832 -3.2817 16 1 5.2588 10.0436 -2.9160 17 6 3.7337 11.3671 -3.7009 18 7 4.6887 11.9693 -4.6344 19 6 4.4504 13.2159 -5.1485 20 1 3.5586 13.7553 -4.8655 21 6 5.3550 13.7863 -6.0335 22 7 6.4416 13.1287 -6.3788 23 14 5.0303 15.4871 -6.7343 24 1 3.7504 16.0098 -6.1921 25 1 6.1382 16.3995 -6.3529 26 1 4.9444 15.4046 -8.2145 27 6 3.3104 9.3793 -2.2035 28 7 1.8944 3.5575 0.0045 29 6 1.3002 2.3805 0.0000 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.0432 0.4030 0.0016 34 1 5.0931 2.6552 0.0008 35 1 4.9164 4.9476 -0.0899 36 1 3.5901 5.5540 0.9305 37 1 4.3688 7.5007 -0.7608 38 1 5.0797 7.2919 -3.4617 39 1 3.6095 6.8701 -4.3947 40 1 3.2308 9.1617 -5.0432 41 1 5.0200 9.0587 -5.1013 42 1 2.7625 11.2709 -4.1862 43 1 3.6382 12.0012 -2.8194 44 1 5.4896 11.4847 -4.8889 45 1 7.0740 13.5274 -6.9969 46 1 2.3224 9.8360 -2.2595 47 1 3.7391 9.5365 -1.2137 48 1 0.2215 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755743870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:13 Heat of formation + Delta-G solvation = -36.774571 kcal Electronic energy + Delta-G solvation = -27298.916534 eV Core-core repulsion = 23354.012708 eV Total energy + Delta-G solvation = -3944.903826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10058 -39.92385 -38.62641 -37.77832 -34.76659 -33.38769 -32.75958 -32.66002 -31.03127 -28.85285 -28.74569 -27.88361 -26.93702 -24.37945 -23.77257 -22.69837 -22.13997 -20.70384 -20.25815 -19.60621 -18.57196 -17.61385 -17.02864 -17.00500 -16.67606 -16.27124 -15.85117 -15.35303 -14.88890 -14.65408 -14.58163 -14.51893 -14.10181 -13.86009 -13.46255 -13.37913 -13.25250 -12.99709 -12.78590 -12.58267 -12.48351 -12.34574 -12.09503 -11.80963 -11.65204 -11.26118 -11.04480 -10.84448 -10.65907 -10.51518 -10.25186 -10.19300 -10.08371 -9.91503 -9.87279 -9.66290 -9.62427 -9.00088 -8.83682 -8.70751 -6.87358 -5.73662 -3.01507 0.74943 0.95403 2.63213 2.73548 3.06262 3.45116 3.50782 3.52130 3.53016 3.94152 4.27289 4.30302 4.50651 4.60711 4.64595 4.68263 4.72831 4.84191 4.86552 4.94799 5.02880 5.07314 5.10851 5.11595 5.25258 5.55837 5.58178 5.58446 5.68151 5.69893 5.71266 5.72132 5.93251 5.95936 6.10732 6.15246 6.23774 6.29814 6.35407 6.59091 6.60692 6.66298 6.77255 6.84700 6.98296 7.47758 7.70083 7.73582 8.23319 8.45745 9.56883 10.16255 10.50859 11.49462 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039702 B = 0.001596 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.084298 B =17539.754207 C =17648.315997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.072 3.928 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.107 3.893 7 C -0.089 4.089 8 C 0.517 3.483 9 O -0.524 6.524 10 N -0.726 5.726 11 C 0.142 3.858 12 H 0.088 0.912 13 C -0.132 4.132 14 C -0.111 4.111 15 C -0.096 4.096 16 H 0.074 0.926 17 C 0.160 3.840 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.122 4.122 28 N -0.421 5.421 29 C 0.026 3.974 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.399 0.601 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 -26.662 18.078 32.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.024 3.976 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.032 4.032 7 C -0.129 4.129 8 C 0.302 3.698 9 O -0.399 6.399 10 N -0.378 5.378 11 C 0.038 3.962 12 H 0.107 0.893 13 C -0.171 4.171 14 C -0.149 4.149 15 C -0.115 4.115 16 H 0.093 0.907 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.161 4.161 28 N -0.130 5.130 29 C -0.133 4.133 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.233 0.767 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.098 -26.322 17.501 32.630 hybrid contribution 0.733 0.347 -0.262 0.853 sum -7.364 -25.975 17.239 32.033 Atomic orbital electron populations 1.23133 0.77875 1.04374 1.01772 1.86064 1.21771 1.26119 1.88612 1.20108 0.93327 0.85777 0.98370 1.20864 0.91673 0.98768 1.02201 1.21800 1.01306 0.91636 0.99744 1.20437 0.89288 0.94275 0.99233 1.20549 1.01166 0.91894 0.99312 1.20261 0.81636 0.81893 0.86058 1.90732 1.32934 1.69538 1.46679 1.46235 1.46813 1.14101 1.30632 1.21682 0.98730 0.90560 0.85218 0.89346 1.22778 0.99667 0.98330 0.96345 1.22464 1.02743 0.92468 0.97236 1.22143 0.99114 0.95679 0.94584 0.90713 1.20699 0.93100 0.90318 0.92681 1.42356 1.24585 1.18182 1.52456 1.19299 1.04585 0.92956 1.20015 0.91193 1.24728 0.97176 0.98700 1.00507 1.69665 1.12293 1.37883 1.38463 0.86127 0.77254 0.84236 0.78656 1.20587 1.21928 1.21910 1.22431 1.01199 0.93148 0.99291 1.67284 1.11453 1.26320 1.07904 1.22876 1.00503 0.86927 1.03005 0.92347 0.92220 0.87878 0.83953 0.83951 0.87296 0.87174 0.76705 0.91558 0.91677 0.91271 0.90957 0.96280 0.96549 0.78289 0.93635 0.90617 0.91390 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.60 10.51 -19.47 -0.20 -2.81 16 3 C 0.07 0.67 6.71 -39.07 -0.26 0.40 16 4 C -0.11 -0.90 10.13 -39.14 -0.40 -1.30 16 5 C -0.13 -1.00 9.70 -39.47 -0.38 -1.38 16 6 C 0.11 1.08 5.75 -82.58 -0.48 0.61 16 7 C -0.09 -0.70 6.10 -29.04 -0.18 -0.87 16 8 C 0.52 5.99 7.76 -10.98 -0.09 5.90 16 9 O -0.52 -8.47 15.00 5.56 0.08 -8.39 16 10 N -0.73 -7.31 5.04 -52.72 -0.27 -7.58 16 11 C 0.14 1.76 3.25 -66.81 -0.22 1.54 16 12 H 0.09 1.25 7.57 -51.93 -0.39 0.85 16 13 C -0.13 -1.77 6.53 -25.08 -0.16 -1.93 16 14 C -0.11 -1.73 6.20 -24.74 -0.15 -1.88 16 15 C -0.10 -1.50 2.88 -88.96 -0.26 -1.76 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 17 C 0.16 3.20 5.55 -4.05 -0.02 3.17 16 18 N -0.73 -18.60 5.49 -59.91 -0.33 -18.93 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 23 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C -0.12 -1.51 6.14 -25.61 -0.16 -1.67 16 28 N -0.42 -5.12 9.24 -9.34 -0.09 -5.21 16 29 C 0.03 0.26 10.22 -17.37 -0.18 0.09 16 30 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 31 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 0.69 7.95 -52.48 -0.42 0.27 16 35 H 0.11 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.86 8.32 -40.82 -0.34 2.53 16 38 H 0.07 0.84 8.05 -51.93 -0.42 0.43 16 39 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.07 1.13 7.97 -51.93 -0.41 0.72 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.39 8.03 -51.93 -0.42 -0.02 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 10.20 7.64 -40.82 -0.31 9.89 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 47 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 48 H 0.16 1.24 6.32 -52.48 -0.33 0.91 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -36.42 395.00 -8.88 -45.30 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.56 Total: 7.16 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.18 Total: -5.39 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.04 Total: -59.42 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.12 Total: -11.20 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.42 -8.88 -45.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.529 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds