Wall clock time and date at job start Tue Mar 31 2020 17:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35913 * 117.00059 * 2 1 4 4 C 1.39135 * 120.47583 * 179.97438 * 3 2 1 5 5 C 1.38530 * 118.37368 * 179.97438 * 4 3 2 6 6 C 1.38257 * 119.22679 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.56142 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46617 * 125.00075 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 H 1.08998 * 110.01995 * 33.60961 * 11 10 8 13 13 C 1.54265 * 110.02856 * 272.16255 * 11 10 8 14 14 C 1.54885 * 104.19613 * 217.10664 * 13 11 10 15 15 C 1.54890 * 102.75089 * 37.94659 * 14 13 11 16 16 H 1.08999 * 110.48298 * 80.73356 * 15 14 13 17 17 C 1.52996 * 110.60027 * 203.32352 * 15 14 13 18 18 N 1.46492 * 109.47141 * 289.83688 * 17 15 14 19 19 C 1.36941 * 120.00064 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99940 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99999 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47333 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47094 * 119.99874 * 23 21 19 26 26 H 1.48501 * 109.47422 * 240.00065 * 23 21 19 27 27 C 1.53878 * 110.03172 * 155.00162 * 11 10 8 28 28 N 1.31846 * 120.88251 * 0.25563 * 6 5 4 29 29 C 1.31846 * 121.77784 * 359.47487 * 28 6 5 30 30 H 1.09002 * 109.47559 * 300.00281 * 1 2 3 31 31 H 1.08998 * 109.47116 * 60.00735 * 1 2 3 32 32 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.81077 * 359.95829 * 4 3 2 34 34 H 1.08003 * 120.38742 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46798 * 5.00966 * 7 6 5 36 36 H 1.08993 * 109.47546 * 245.00518 * 7 6 5 37 37 H 0.97005 * 119.99846 * 359.72750 * 10 8 7 38 38 H 1.08997 * 110.49360 * 335.78854 * 13 11 10 39 39 H 1.09008 * 110.48356 * 98.42938 * 13 11 10 40 40 H 1.09003 * 110.75856 * 279.63206 * 14 13 11 41 41 H 1.09004 * 110.91771 * 156.33281 * 14 13 11 42 42 H 1.09003 * 109.47324 * 49.84173 * 17 15 14 43 43 H 1.09006 * 109.46849 * 169.83930 * 17 15 14 44 44 H 0.97005 * 120.00605 * 0.02562 * 18 17 15 45 45 H 0.96998 * 120.00493 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.02794 * 238.56664 * 27 11 10 47 47 H 1.09002 * 110.03146 * 359.97438 * 27 11 10 48 48 H 1.08006 * 119.65755 * 180.26937 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0180 2.5519 0.0000 6 6 3.2078 3.6722 -0.0006 7 6 3.8343 5.0428 -0.0006 8 6 3.3023 5.8381 -1.1648 9 8 2.4977 5.3393 -1.9230 10 7 3.7251 7.1018 -1.3670 11 6 3.2124 7.8730 -2.5022 12 1 2.1767 7.5987 -2.7023 13 6 4.0796 7.6142 -3.7515 14 6 4.1380 8.9879 -4.4646 15 6 4.2338 9.9832 -3.2817 16 1 5.2588 10.0436 -2.9160 17 6 3.7337 11.3671 -3.7009 18 7 4.6887 11.9693 -4.6344 19 6 4.4504 13.2159 -5.1485 20 1 3.5586 13.7553 -4.8655 21 6 5.3550 13.7863 -6.0335 22 7 6.4416 13.1287 -6.3788 23 14 5.0303 15.4871 -6.7343 24 1 3.7504 16.0098 -6.1921 25 1 6.1382 16.3995 -6.3529 26 1 4.9444 15.4046 -8.2145 27 6 3.3104 9.3793 -2.2035 28 7 1.8944 3.5575 0.0045 29 6 1.3002 2.3805 0.0000 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.0432 0.4030 0.0016 34 1 5.0931 2.6552 0.0008 35 1 4.9164 4.9476 -0.0899 36 1 3.5901 5.5540 0.9305 37 1 4.3688 7.5007 -0.7608 38 1 5.0797 7.2919 -3.4617 39 1 3.6095 6.8701 -4.3947 40 1 3.2308 9.1617 -5.0432 41 1 5.0200 9.0587 -5.1013 42 1 2.7625 11.2709 -4.1862 43 1 3.6382 12.0012 -2.8194 44 1 5.4896 11.4847 -4.8889 45 1 7.0740 13.5274 -6.9969 46 1 2.3224 9.8360 -2.2595 47 1 3.7391 9.5365 -1.2137 48 1 0.2215 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755743870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:12 Heat of formation + Delta-G solvation = -62.495484 kcal Electronic energy + Delta-G solvation = -27300.031876 eV Core-core repulsion = 23354.012708 eV Total energy + Delta-G solvation = -3946.019169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74695 -40.83311 -39.42017 -38.77767 -36.42535 -34.70414 -33.46965 -33.38038 -32.77772 -30.15639 -29.65410 -28.59575 -27.83045 -26.11203 -24.42653 -23.90550 -23.38664 -21.61393 -21.28802 -20.92701 -19.14404 -19.06493 -18.32149 -17.79212 -17.51963 -16.86717 -16.78138 -16.53884 -16.14827 -15.88099 -15.61549 -15.23372 -15.12122 -15.04775 -14.82932 -14.54322 -14.37797 -14.07253 -13.95806 -13.54608 -13.22691 -13.12847 -13.05999 -12.82196 -12.77293 -12.69901 -12.36251 -12.28989 -12.10948 -12.06738 -11.75144 -11.61924 -11.51622 -11.46123 -10.91203 -10.84814 -10.64344 -10.33616 -9.95664 -9.34624 -8.96551 -7.94068 -5.21983 0.11730 0.31628 1.47839 1.48482 1.58631 1.78723 2.22274 2.27445 2.57067 2.84155 3.33973 3.39530 3.61122 3.63085 3.66617 3.74324 3.90343 3.96939 4.11545 4.20833 4.32498 4.33978 4.39600 4.47796 4.53191 4.55147 4.56433 4.60821 4.64482 4.68738 4.73648 4.74963 4.79920 4.90650 4.98266 5.07820 5.11729 5.12102 5.18407 5.27537 5.40128 5.49265 5.53698 5.57358 5.69452 6.20876 6.29001 6.70333 7.04411 7.35253 7.42346 8.12959 8.36054 9.29747 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039702 B = 0.001596 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.084298 B =17539.754207 C =17648.315997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.064 3.936 4 C -0.118 4.118 5 C -0.119 4.119 6 C 0.083 3.917 7 C -0.081 4.081 8 C 0.513 3.487 9 O -0.576 6.576 10 N -0.712 5.712 11 C 0.151 3.849 12 H 0.070 0.930 13 C -0.121 4.121 14 C -0.110 4.110 15 C -0.087 4.087 16 H 0.076 0.924 17 C 0.157 3.843 18 N -0.744 5.744 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.972 3.028 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.294 1.294 27 C -0.109 4.109 28 N -0.458 5.458 29 C 0.005 3.995 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.417 0.583 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 -27.092 19.909 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.016 3.984 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.056 4.056 7 C -0.121 4.121 8 C 0.300 3.700 9 O -0.455 6.455 10 N -0.366 5.366 11 C 0.045 3.955 12 H 0.088 0.912 13 C -0.160 4.160 14 C -0.148 4.148 15 C -0.106 4.106 16 H 0.094 0.906 17 C 0.031 3.969 18 N -0.386 5.386 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.802 3.198 24 H -0.191 1.191 25 H -0.219 1.219 26 H -0.221 1.221 27 C -0.148 4.148 28 N -0.168 5.168 29 C -0.153 4.153 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.181 0.819 34 H 0.196 0.804 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.254 0.746 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.574 -26.749 19.389 33.894 hybrid contribution 0.502 0.418 -0.821 1.049 sum -7.072 -26.331 18.568 32.987 Atomic orbital electron populations 1.23380 0.76312 1.05959 1.02218 1.86046 1.23494 1.25762 1.88500 1.20275 0.94022 0.85823 0.98231 1.21263 0.91566 0.99920 1.01648 1.22180 1.02895 0.90747 0.98019 1.20924 0.89074 0.95973 0.99632 1.20663 1.02992 0.90290 0.98167 1.20961 0.80684 0.81994 0.86363 1.90719 1.35309 1.70650 1.48781 1.46076 1.46759 1.13692 1.30032 1.21384 0.97598 0.90794 0.85690 0.91213 1.22662 1.00422 0.96474 0.96435 1.22383 1.01133 0.94164 0.97155 1.22015 0.99773 0.93235 0.95545 0.90574 1.20881 0.91939 0.92530 0.91598 1.42564 1.25183 1.17616 1.53265 1.19700 1.04408 0.94014 1.19599 0.90802 1.25543 0.97269 1.02537 1.01439 1.69815 1.13278 1.39538 1.39367 0.85087 0.77495 0.79794 0.77471 1.19133 1.21895 1.22150 1.22319 1.00536 0.92548 0.99352 1.67253 1.12994 1.27328 1.09225 1.23057 1.01193 0.87122 1.03925 0.91471 0.92249 0.85723 0.81931 0.80450 0.83402 0.85078 0.74555 0.90402 0.92677 0.92664 0.92854 0.96670 0.95997 0.79369 0.94043 0.90577 0.88604 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 113.37 1.11 1.25 16 2 O -0.33 -5.25 10.51 -92.58 -0.97 -6.23 16 3 C 0.06 1.17 6.71 22.60 0.15 1.32 16 4 C -0.12 -1.78 10.13 22.56 0.23 -1.55 16 5 C -0.12 -1.62 9.70 22.34 0.22 -1.41 16 6 C 0.08 1.55 5.75 42.56 0.24 1.80 16 7 C -0.08 -1.04 6.10 29.10 0.18 -0.86 16 8 C 0.51 11.00 7.76 87.65 0.68 11.68 16 9 O -0.58 -18.58 15.00 -3.04 -0.05 -18.62 16 10 N -0.71 -12.58 5.04 -439.09 -2.21 -14.79 16 11 C 0.15 3.51 3.25 45.72 0.15 3.66 16 12 H 0.07 1.95 7.57 -2.39 -0.02 1.93 16 13 C -0.12 -3.15 6.53 31.67 0.21 -2.94 16 14 C -0.11 -3.45 6.20 31.88 0.20 -3.25 16 15 C -0.09 -2.62 2.88 -9.72 -0.03 -2.65 16 16 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 17 C 0.16 6.20 5.55 86.38 0.48 6.68 16 18 N -0.74 -38.02 5.49 -343.46 -1.89 -39.91 16 19 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 22 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 23 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 C -0.11 -2.46 6.14 31.32 0.19 -2.27 16 28 N -0.46 -11.13 9.24 -183.48 -1.69 -12.82 16 29 C 0.01 0.11 10.22 84.80 0.87 0.98 16 30 H 0.07 0.47 7.68 -2.39 -0.02 0.46 16 31 H 0.06 0.53 7.68 -2.39 -0.02 0.51 16 32 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.18 0.99 7.95 -2.91 -0.02 0.97 16 35 H 0.15 0.69 7.87 -2.39 -0.02 0.67 16 36 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.42 4.41 8.32 -92.70 -0.77 3.64 16 38 H 0.08 1.85 8.05 -2.39 -0.02 1.83 16 39 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.05 1.86 7.97 -2.39 -0.02 1.84 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.02 0.62 8.03 -2.39 -0.02 0.60 16 43 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.37 20.25 7.64 -92.70 -0.71 19.54 16 45 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.08 1.76 7.84 -2.39 -0.02 1.74 16 47 H 0.10 1.67 7.62 -2.39 -0.02 1.65 16 48 H 0.16 2.76 6.32 -2.91 -0.02 2.74 16 Total: -1.00 -80.76 395.00 1.18 -79.58 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.50 Total: 28.15 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 6.18 Total: -4.54 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -5.51 Total: -126.93 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.02 Total: -24.85 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -80.76 1.18 -79.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755743870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.088 kcal (2) G-P(sol) polarization free energy of solvation -80.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds