Wall clock time and date at job start Tue Mar 31 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99966 * 2 1 4 4 C 1.52993 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47118 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00002 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99659 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.63443 * 359.72780 * 7 5 4 9 9 C 1.53623 * 108.54425 * 126.36666 * 8 7 5 10 10 C 1.53033 * 109.24567 * 54.85424 * 9 8 7 11 11 N 1.46500 * 109.45221 * 178.49796 * 10 9 8 12 12 C 1.38817 * 120.00050 * 275.06425 * 11 10 9 13 13 C 1.39802 * 119.58547 * 359.97438 * 12 11 10 14 14 C 1.38596 * 119.49123 * 180.02562 * 13 12 11 15 15 C 1.38388 * 118.68196 * 359.97438 * 14 13 12 16 16 C 1.40554 * 119.14712 * 0.02562 * 15 14 13 17 17 C 1.41320 * 119.78150 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99776 * 353.78543 * 17 16 15 19 19 C 1.40027 * 119.99739 * 173.78077 * 17 16 15 20 20 N 1.30744 * 120.00179 * 6.35772 * 19 17 16 21 21 Si 1.86797 * 119.99853 * 186.35232 * 19 17 16 22 22 H 1.48498 * 109.47107 * 94.98507 * 21 19 17 23 23 H 1.48495 * 109.47237 * 214.99011 * 21 19 17 24 24 H 1.48505 * 109.47320 * 334.98776 * 21 19 17 25 25 N 1.31955 * 119.58430 * 179.72923 * 12 11 10 26 26 C 1.53048 * 109.53684 * 298.51587 * 10 9 8 27 27 C 1.46924 * 120.62588 * 180.02562 * 7 5 4 28 28 H 1.08998 * 109.47521 * 60.00477 * 1 2 3 29 29 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47445 * 300.00293 * 1 2 3 31 31 H 1.09002 * 109.46654 * 300.00258 * 3 2 1 32 32 H 1.08991 * 109.46928 * 59.99775 * 3 2 1 33 33 H 1.08998 * 109.47369 * 300.00449 * 4 3 2 34 34 H 1.09003 * 109.46963 * 59.99830 * 4 3 2 35 35 H 1.08996 * 109.58697 * 246.20167 * 8 7 5 36 36 H 1.09001 * 109.58361 * 6.62104 * 8 7 5 37 37 H 1.09007 * 109.63193 * 294.86271 * 9 8 7 38 38 H 1.08995 * 109.45646 * 174.74269 * 9 8 7 39 39 H 1.08999 * 109.45801 * 58.53201 * 10 9 8 40 40 H 0.96999 * 119.99547 * 95.06461 * 11 10 9 41 41 H 1.08001 * 120.24836 * 359.97438 * 13 12 11 42 42 H 1.07997 * 120.65522 * 180.02562 * 14 13 12 43 43 H 1.07993 * 120.42082 * 179.97438 * 15 14 13 44 44 H 0.96994 * 120.00269 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.49495 * 301.40654 * 26 10 9 46 46 H 1.09005 * 109.52165 * 181.32890 * 26 10 9 47 47 H 1.09000 * 109.59037 * 353.38233 * 27 7 5 48 48 H 1.09005 * 109.58515 * 113.65755 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5615 -0.0013 6 8 3.4354 3.5427 -0.0008 7 7 5.4887 2.7023 -0.0014 8 6 6.3654 1.5233 0.0051 9 6 7.3505 1.6405 -1.1679 10 6 8.0925 2.9754 -1.0720 11 7 9.0589 3.0763 -2.1684 12 6 10.3216 2.5151 -2.0345 13 6 10.6619 1.8562 -0.8494 14 6 11.9232 1.2971 -0.7176 15 6 12.8128 1.4092 -1.7717 16 6 12.4114 2.0838 -2.9376 17 6 13.3092 2.2066 -4.0220 18 1 14.3309 1.8725 -3.9175 19 6 12.8741 2.7613 -5.2318 20 7 11.6767 3.2787 -5.3206 21 14 14.0045 2.7621 -6.7189 22 1 13.7106 1.5775 -7.5647 23 1 13.7838 4.0007 -7.5078 24 1 15.4179 2.7088 -6.2664 25 7 11.1837 2.6061 -3.0293 26 6 7.0890 4.1269 -1.1693 27 6 6.1010 4.0379 -0.0014 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 1.6886 1.8463 0.8899 33 1 3.8574 0.6436 0.8890 34 1 3.8566 0.6439 -0.8909 35 1 6.9155 1.4822 0.9452 36 1 5.7648 0.6208 -0.1089 37 1 6.8048 1.5944 -2.1104 38 1 8.0681 0.8213 -1.1225 39 1 8.6178 3.0312 -0.1186 40 1 8.8165 3.5351 -2.9879 41 1 9.9476 1.7842 -0.0425 42 1 12.2059 0.7836 0.1894 43 1 13.8031 0.9844 -1.6991 44 1 11.3754 3.6633 -6.1585 45 1 6.5459 4.0574 -2.1118 46 1 7.6202 5.0777 -1.1247 47 1 5.3260 4.7952 -0.1197 48 1 6.6279 4.1983 0.9392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771658671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:51 Heat of formation + Delta-G solvation = -44.096985 kcal Electronic energy + Delta-G solvation = -28242.999398 eV Core-core repulsion = 24297.778049 eV Total energy + Delta-G solvation = -3945.221350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47738 -38.67820 -38.08344 -37.37279 -34.92540 -33.39602 -32.56866 -31.24711 -30.93624 -30.18523 -28.41710 -26.97848 -25.46161 -24.90817 -23.84787 -22.92457 -21.62033 -20.95226 -20.16823 -19.06762 -17.77522 -17.34485 -16.65498 -16.47973 -16.18496 -15.79907 -15.40647 -15.16977 -15.06501 -14.79220 -14.35661 -14.18224 -14.04040 -13.70888 -13.45343 -13.31037 -12.95846 -12.79057 -12.49565 -12.28192 -12.08986 -11.96949 -11.77891 -11.74001 -11.49874 -11.34887 -11.27149 -11.01016 -10.92867 -10.69165 -10.46965 -10.37838 -10.02038 -10.01154 -9.92455 -9.49471 -8.92405 -8.84704 -7.93747 -7.52341 -6.54611 -6.35573 -4.48791 2.39506 2.64653 2.85611 3.10402 3.13762 3.21695 3.28081 3.49529 3.97150 4.06413 4.35728 4.60112 4.69449 4.74740 4.81304 4.87636 4.97279 5.01178 5.03435 5.11667 5.18398 5.22149 5.32343 5.40161 5.43843 5.47176 5.52309 5.62842 5.70150 5.83795 5.95306 6.04038 6.12542 6.14779 6.28766 6.42887 6.59404 6.77765 6.82997 6.88150 6.93348 7.17023 7.23386 7.57757 7.79116 7.90124 7.92841 8.15387 8.34858 8.65984 8.78704 9.10114 10.22647 10.38466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.002169 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.640805 B =12907.772618 C =13193.329820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.077 3.923 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.548 6.548 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.151 4.151 10 C 0.168 3.832 11 N -0.734 5.734 12 C 0.412 3.588 13 C -0.368 4.368 14 C -0.032 4.032 15 C -0.317 4.317 16 C 0.292 3.708 17 C -0.435 4.435 18 H 0.083 0.917 19 C 0.071 3.929 20 N -0.716 5.716 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.262 1.262 25 N -0.532 5.532 26 C -0.141 4.141 27 C 0.116 3.884 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.269 0.731 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 -2.847 8.970 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.000 4.000 4 C -0.180 4.180 5 C 0.310 3.690 6 O -0.427 6.427 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.191 4.191 10 C 0.061 3.939 11 N -0.369 5.369 12 C 0.172 3.828 13 C -0.394 4.394 14 C -0.057 4.057 15 C -0.340 4.340 16 C 0.165 3.835 17 C -0.467 4.467 18 H 0.101 0.899 19 C -0.154 4.154 20 N -0.337 5.337 21 Si 0.729 3.271 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 N -0.253 5.253 26 C -0.180 4.180 27 C -0.006 4.006 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.312 -2.005 8.232 19.274 hybrid contribution 0.559 -0.182 -0.237 0.634 sum -16.753 -2.187 7.995 18.692 Atomic orbital electron populations 1.22734 0.80590 1.02765 1.00197 1.87807 1.20073 1.28017 1.95567 1.22165 0.91944 0.84197 1.01733 1.21512 0.95350 0.95430 1.05750 1.20362 0.81936 0.91021 0.75723 1.90694 1.60533 1.40872 1.50558 1.48164 1.05309 1.07928 1.72807 1.21954 0.92629 0.87451 0.99619 1.22564 0.98292 1.00297 0.97925 1.20575 0.88597 0.92744 0.92009 1.44200 1.11144 1.63540 1.17997 1.18527 0.85708 0.88576 0.89980 1.20601 0.99592 1.19300 0.99874 1.20598 0.93226 0.95529 0.96312 1.21534 1.00434 1.14307 0.97683 1.18205 0.88197 0.86455 0.90629 1.19589 0.97410 1.34559 0.95107 0.89883 1.26048 0.95318 0.93753 1.00253 1.70147 1.16058 1.22270 1.25254 0.86365 0.81319 0.78381 0.81025 1.19579 1.20253 1.18559 1.68215 1.03368 1.27082 1.26641 1.22201 0.96991 0.99714 0.99055 1.21589 0.96403 0.84252 0.98391 0.93933 0.89511 0.93969 0.92384 0.92423 0.87931 0.87811 0.90730 0.89469 0.91392 0.89627 0.90443 0.77046 0.89132 0.89008 0.88767 0.91956 0.91134 0.89908 0.88754 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.40 -3.89 10.70 -35.23 -0.38 -4.27 16 3 C 0.08 0.73 5.23 37.15 0.19 0.93 16 4 C -0.14 -1.25 4.41 -27.88 -0.12 -1.38 16 5 C 0.52 5.98 7.70 -10.98 -0.08 5.89 16 6 O -0.55 -8.02 15.40 5.56 0.09 -7.93 16 7 N -0.61 -6.47 2.97 -172.48 -0.51 -6.98 16 8 C 0.11 1.00 6.37 -3.49 -0.02 0.98 16 9 C -0.15 -1.87 5.58 -26.39 -0.15 -2.01 16 10 C 0.17 2.36 2.10 -67.89 -0.14 2.22 16 11 N -0.73 -13.77 5.24 -53.86 -0.28 -14.05 16 12 C 0.41 9.60 7.63 -155.33 -1.18 8.41 16 13 C -0.37 -8.01 8.83 -38.87 -0.34 -8.35 16 14 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 15 C -0.32 -7.87 9.83 -38.65 -0.38 -8.25 16 16 C 0.29 8.02 6.54 -85.00 -0.56 7.46 16 17 C -0.43 -11.68 9.13 -37.74 -0.34 -12.02 16 18 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 19 C 0.07 1.82 5.49 -17.34 -0.10 1.72 16 20 N -0.72 -18.85 11.48 55.55 0.64 -18.22 16 21 Si 0.90 18.64 29.56 -169.99 -5.03 13.62 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 N -0.53 -14.34 7.91 -10.33 -0.08 -14.43 16 26 C -0.14 -1.67 5.55 -26.59 -0.15 -1.82 16 27 C 0.12 1.25 6.43 -3.69 -0.02 1.23 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.10 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.10 0.85 7.70 -51.93 -0.40 0.45 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.66 5.93 -51.93 -0.31 0.35 16 37 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 38 H 0.09 1.20 7.66 -51.93 -0.40 0.80 16 39 H 0.08 1.13 6.43 -51.93 -0.33 0.80 16 40 H 0.39 7.60 8.72 -40.82 -0.36 7.25 16 41 H 0.09 1.71 6.06 -52.49 -0.32 1.39 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 44 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -31.53 387.61 -9.91 -41.44 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.51 Total: 9.74 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.69 Total: -4.76 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.24 Total: -53.68 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.29 Total: -12.20 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.53 -9.91 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.660 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds