Wall clock time and date at job start Tue Mar 31 2020 17:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99966 * 2 1 4 4 C 1.52993 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47118 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00002 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99659 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.63443 * 359.72780 * 7 5 4 9 9 C 1.53623 * 108.54425 * 126.36666 * 8 7 5 10 10 C 1.53033 * 109.24567 * 54.85424 * 9 8 7 11 11 N 1.46500 * 109.45221 * 178.49796 * 10 9 8 12 12 C 1.38817 * 120.00050 * 275.06425 * 11 10 9 13 13 C 1.39802 * 119.58547 * 359.97438 * 12 11 10 14 14 C 1.38596 * 119.49123 * 180.02562 * 13 12 11 15 15 C 1.38388 * 118.68196 * 359.97438 * 14 13 12 16 16 C 1.40554 * 119.14712 * 0.02562 * 15 14 13 17 17 C 1.41320 * 119.78150 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99776 * 353.78543 * 17 16 15 19 19 C 1.40027 * 119.99739 * 173.78077 * 17 16 15 20 20 N 1.30744 * 120.00179 * 6.35772 * 19 17 16 21 21 Si 1.86797 * 119.99853 * 186.35232 * 19 17 16 22 22 H 1.48498 * 109.47107 * 94.98507 * 21 19 17 23 23 H 1.48495 * 109.47237 * 214.99011 * 21 19 17 24 24 H 1.48505 * 109.47320 * 334.98776 * 21 19 17 25 25 N 1.31955 * 119.58430 * 179.72923 * 12 11 10 26 26 C 1.53048 * 109.53684 * 298.51587 * 10 9 8 27 27 C 1.46924 * 120.62588 * 180.02562 * 7 5 4 28 28 H 1.08998 * 109.47521 * 60.00477 * 1 2 3 29 29 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47445 * 300.00293 * 1 2 3 31 31 H 1.09002 * 109.46654 * 300.00258 * 3 2 1 32 32 H 1.08991 * 109.46928 * 59.99775 * 3 2 1 33 33 H 1.08998 * 109.47369 * 300.00449 * 4 3 2 34 34 H 1.09003 * 109.46963 * 59.99830 * 4 3 2 35 35 H 1.08996 * 109.58697 * 246.20167 * 8 7 5 36 36 H 1.09001 * 109.58361 * 6.62104 * 8 7 5 37 37 H 1.09007 * 109.63193 * 294.86271 * 9 8 7 38 38 H 1.08995 * 109.45646 * 174.74269 * 9 8 7 39 39 H 1.08999 * 109.45801 * 58.53201 * 10 9 8 40 40 H 0.96999 * 119.99547 * 95.06461 * 11 10 9 41 41 H 1.08001 * 120.24836 * 359.97438 * 13 12 11 42 42 H 1.07997 * 120.65522 * 180.02562 * 14 13 12 43 43 H 1.07993 * 120.42082 * 179.97438 * 15 14 13 44 44 H 0.96994 * 120.00269 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.49495 * 301.40654 * 26 10 9 46 46 H 1.09005 * 109.52165 * 181.32890 * 26 10 9 47 47 H 1.09000 * 109.59037 * 353.38233 * 27 7 5 48 48 H 1.09005 * 109.58515 * 113.65755 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5615 -0.0013 6 8 3.4354 3.5427 -0.0008 7 7 5.4887 2.7023 -0.0014 8 6 6.3654 1.5233 0.0051 9 6 7.3505 1.6405 -1.1679 10 6 8.0925 2.9754 -1.0720 11 7 9.0589 3.0763 -2.1684 12 6 10.3216 2.5151 -2.0345 13 6 10.6619 1.8562 -0.8494 14 6 11.9232 1.2971 -0.7176 15 6 12.8128 1.4092 -1.7717 16 6 12.4114 2.0838 -2.9376 17 6 13.3092 2.2066 -4.0220 18 1 14.3309 1.8725 -3.9175 19 6 12.8741 2.7613 -5.2318 20 7 11.6767 3.2787 -5.3206 21 14 14.0045 2.7621 -6.7189 22 1 13.7106 1.5775 -7.5647 23 1 13.7838 4.0007 -7.5078 24 1 15.4179 2.7088 -6.2664 25 7 11.1837 2.6061 -3.0293 26 6 7.0890 4.1269 -1.1693 27 6 6.1010 4.0379 -0.0014 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 1.6886 1.8463 0.8899 33 1 3.8574 0.6436 0.8890 34 1 3.8566 0.6439 -0.8909 35 1 6.9155 1.4822 0.9452 36 1 5.7648 0.6208 -0.1089 37 1 6.8048 1.5944 -2.1104 38 1 8.0681 0.8213 -1.1225 39 1 8.6178 3.0312 -0.1186 40 1 8.8165 3.5351 -2.9879 41 1 9.9476 1.7842 -0.0425 42 1 12.2059 0.7836 0.1894 43 1 13.8031 0.9844 -1.6991 44 1 11.3754 3.6633 -6.1585 45 1 6.5459 4.0574 -2.1118 46 1 7.6202 5.0777 -1.1247 47 1 5.3260 4.7952 -0.1197 48 1 6.6279 4.1983 0.9392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771658671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:50 Heat of formation + Delta-G solvation = -63.539635 kcal Electronic energy + Delta-G solvation = -28243.842495 eV Core-core repulsion = 24297.778049 eV Total energy + Delta-G solvation = -3946.064446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40526 -40.19659 -39.01600 -38.47096 -36.30179 -35.12901 -33.50543 -32.62819 -31.95362 -31.76599 -30.03244 -27.62621 -27.26832 -25.91065 -24.76012 -23.86804 -23.34446 -22.37564 -21.53885 -19.99039 -19.25682 -18.54130 -17.94562 -17.35584 -17.24909 -16.69452 -16.55740 -16.50479 -16.20786 -15.99450 -15.75399 -15.34739 -15.14817 -14.95233 -14.70453 -14.53933 -14.14054 -14.09196 -13.74831 -13.54509 -13.32803 -12.98698 -12.91316 -12.75673 -12.70411 -12.55756 -12.42939 -12.25939 -12.21301 -12.09097 -12.02998 -11.70071 -11.55334 -11.25034 -10.94050 -10.68565 -10.58664 -9.81177 -9.74638 -9.40515 -8.25934 -8.22336 -6.45178 1.08326 1.38983 1.41237 1.52096 1.54797 1.58459 1.83539 2.25092 2.63108 2.81785 2.93627 3.56313 3.72895 3.86569 3.98343 4.01294 4.05027 4.12735 4.15869 4.31063 4.39820 4.42344 4.45172 4.51177 4.51435 4.57926 4.69109 4.78910 4.79361 4.80912 4.85157 4.86272 4.87514 4.96729 5.00779 5.04612 5.12897 5.18538 5.31086 5.41889 5.50360 5.75840 6.00798 6.12172 6.13151 6.25124 6.32021 6.60251 6.86024 6.97185 7.05878 7.25260 8.37527 8.52910 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.002169 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.640805 B =12907.772618 C =13193.329820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.135 4.135 5 C 0.519 3.481 6 O -0.585 6.585 7 N -0.607 5.607 8 C 0.113 3.887 9 C -0.143 4.143 10 C 0.165 3.835 11 N -0.730 5.730 12 C 0.396 3.604 13 C -0.359 4.359 14 C -0.030 4.030 15 C -0.346 4.346 16 C 0.259 3.741 17 C -0.474 4.474 18 H 0.084 0.916 19 C 0.027 3.973 20 N -0.752 5.752 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.256 1.256 25 N -0.567 5.567 26 C -0.130 4.130 27 C 0.120 3.880 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.389 0.611 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.275 0.725 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.464 -3.847 10.230 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.001 3.999 4 C -0.174 4.174 5 C 0.309 3.691 6 O -0.466 6.466 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.183 4.183 10 C 0.059 3.941 11 N -0.363 5.363 12 C 0.156 3.844 13 C -0.384 4.384 14 C -0.054 4.054 15 C -0.369 4.369 16 C 0.132 3.868 17 C -0.506 4.506 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.375 5.375 21 Si 0.804 3.196 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.180 1.180 25 N -0.290 5.290 26 C -0.169 4.169 27 C -0.003 4.003 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.223 0.777 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.159 -3.019 9.533 20.730 hybrid contribution 0.675 0.131 -0.503 0.852 sum -17.484 -2.888 9.030 19.889 Atomic orbital electron populations 1.22939 0.79263 1.04042 1.00785 1.87775 1.21625 1.27946 1.95632 1.22102 0.92533 0.84170 1.01059 1.21507 0.94706 0.93947 1.07255 1.20793 0.81894 0.91573 0.74817 1.90683 1.61337 1.42273 1.52262 1.48226 1.05344 1.08184 1.72230 1.22036 0.92198 0.87835 0.98886 1.22439 0.98399 0.98439 0.99064 1.20856 0.88175 0.94661 0.90379 1.44420 1.10471 1.62449 1.18957 1.18973 0.86641 0.88761 0.90048 1.20969 0.99991 1.17465 0.99983 1.21027 0.92825 0.94766 0.96827 1.21677 1.01510 1.15534 0.98178 1.18659 0.88938 0.87359 0.91888 1.19912 0.97782 1.36458 0.96472 0.89783 1.26923 0.96894 0.92801 1.02870 1.70242 1.17818 1.23125 1.26293 0.85185 0.79073 0.78585 0.76749 1.19054 1.19390 1.17992 1.68171 1.03967 1.28295 1.28555 1.22086 0.96561 0.98844 0.99372 1.21543 0.95839 0.84465 0.98428 0.93569 0.87946 0.93202 0.93466 0.92818 0.85751 0.86707 0.88826 0.86958 0.92339 0.90883 0.90188 0.77717 0.85715 0.85270 0.88297 0.91479 0.91953 0.89911 0.89535 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.36 10.70 -148.98 -1.59 -8.96 16 3 C 0.08 1.40 5.23 71.98 0.38 1.77 16 4 C -0.13 -2.07 4.41 29.85 0.13 -1.93 16 5 C 0.52 10.92 7.70 87.66 0.67 11.60 16 6 O -0.58 -16.61 15.40 -3.03 -0.05 -16.65 16 7 N -0.61 -11.39 2.97 -817.99 -2.43 -13.82 16 8 C 0.11 1.73 6.37 86.51 0.55 2.28 16 9 C -0.14 -3.25 5.58 30.81 0.17 -3.08 16 10 C 0.16 4.36 2.10 45.02 0.09 4.46 16 11 N -0.73 -27.26 5.24 -324.33 -1.70 -28.96 16 12 C 0.40 18.48 7.63 133.42 1.02 19.50 16 13 C -0.36 -15.00 8.83 22.73 0.20 -14.80 16 14 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 15 C -0.35 -17.40 9.83 22.87 0.22 -17.18 16 16 C 0.26 14.66 6.54 40.18 0.26 14.92 16 17 C -0.47 -26.41 9.13 23.46 0.21 -26.20 16 18 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 19 C 0.03 1.39 5.49 85.29 0.47 1.86 16 20 N -0.75 -40.89 11.48 21.84 0.25 -40.64 16 21 Si 0.98 38.98 29.56 68.60 2.03 41.01 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 N -0.57 -31.45 7.91 -186.58 -1.48 -32.93 16 26 C -0.13 -2.93 5.55 30.69 0.17 -2.76 16 27 C 0.12 2.36 6.43 86.38 0.56 2.91 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 32 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.12 1.39 7.93 -2.39 -0.02 1.37 16 34 H 0.11 1.54 7.70 -2.39 -0.02 1.52 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.22 5.93 -2.39 -0.01 1.21 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.07 1.88 7.66 -2.39 -0.02 1.86 16 39 H 0.08 2.11 6.43 -2.39 -0.02 2.10 16 40 H 0.39 15.30 8.72 -92.71 -0.81 14.49 16 41 H 0.13 4.28 6.06 -2.91 -0.02 4.26 16 42 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 43 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 44 H 0.27 13.53 8.29 -92.71 -0.77 12.76 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 47 H 0.09 1.90 7.01 -2.39 -0.02 1.88 16 48 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -70.84 387.61 1.79 -69.05 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: 0.16 Total: 38.07 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.59 Total: -6.17 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -5.35 Total: -116.35 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -1.64 Total: -25.61 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -70.84 1.79 -69.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.510 kcal (2) G-P(sol) polarization free energy of solvation -70.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds