Wall clock time and date at job start Tue Mar 31 2020 17:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46707 * 2 1 4 4 C 1.52995 * 109.47330 * 120.00277 * 2 1 3 5 5 N 1.46500 * 109.47235 * 295.29352 * 4 2 1 6 6 S 1.65597 * 120.00097 * 163.12867 * 5 4 2 7 7 O 1.42099 * 106.40065 * 178.54189 * 6 5 4 8 8 O 1.42100 * 106.40383 * 311.46261 * 6 5 4 9 9 N 1.65601 * 107.21836 * 65.00424 * 6 5 4 10 10 C 1.46500 * 119.99859 * 270.00212 * 9 6 5 11 11 C 1.46505 * 119.99792 * 89.99873 * 9 6 5 12 12 C 1.50693 * 109.47283 * 95.00408 * 11 9 6 13 13 H 1.08004 * 119.99650 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00144 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00049 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99977 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47063 * 90.00162 * 16 14 12 18 18 H 1.48502 * 109.47015 * 210.00247 * 16 14 12 19 19 H 1.48506 * 109.47271 * 330.00002 * 16 14 12 20 20 N 1.46900 * 109.47040 * 240.00471 * 2 1 3 21 21 C 1.46849 * 110.99802 * 298.70665 * 20 2 1 22 22 C 1.53037 * 109.52337 * 174.15960 * 21 20 2 23 23 C 1.53122 * 109.27695 * 59.18014 * 22 21 20 24 24 C 1.53118 * 109.16274 * 302.34718 * 23 22 21 25 25 H 1.09001 * 109.50154 * 297.67097 * 24 23 22 26 26 C 1.52995 * 109.50378 * 177.59649 * 24 23 22 27 27 C 1.46849 * 111.00143 * 174.49940 * 20 2 1 28 28 H 1.09003 * 109.47136 * 299.99916 * 1 2 3 29 29 H 1.08999 * 109.47514 * 59.99712 * 1 2 3 30 30 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47030 * 55.29411 * 4 2 1 32 32 H 1.09004 * 109.47406 * 175.29609 * 4 2 1 33 33 H 0.96998 * 120.00060 * 343.13843 * 5 4 2 34 34 H 1.08993 * 109.47084 * 90.00187 * 10 9 6 35 35 H 1.09001 * 109.46934 * 209.99522 * 10 9 6 36 36 H 1.08999 * 109.47031 * 329.99663 * 10 9 6 37 37 H 1.09007 * 109.46594 * 215.00100 * 11 9 6 38 38 H 1.08997 * 109.47251 * 334.99828 * 11 9 6 39 39 H 0.96996 * 120.00145 * 179.97438 * 15 14 12 40 40 H 1.08992 * 109.46410 * 294.18139 * 21 20 2 41 41 H 1.09003 * 109.46239 * 54.15866 * 21 20 2 42 42 H 1.08994 * 109.50729 * 179.12286 * 22 21 20 43 43 H 1.09002 * 109.50327 * 299.20381 * 22 21 20 44 44 H 1.08997 * 109.52114 * 62.25022 * 23 22 21 45 45 H 1.08998 * 109.52448 * 182.37772 * 23 22 21 46 46 H 1.08999 * 109.47475 * 59.99900 * 26 24 23 47 47 H 1.09006 * 109.47194 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.47248 * 299.99774 * 26 24 23 49 49 H 1.09000 * 109.45760 * 305.85569 * 27 20 2 50 50 H 1.08998 * 109.46273 * 65.81986 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6464 0.0316 2.4427 6 16 1.6848 -0.6953 3.9301 7 8 1.2860 0.2930 4.8700 8 8 1.0199 -1.9426 3.7845 9 7 3.2686 -1.0457 4.2638 10 6 3.8341 -2.3355 3.8603 11 6 4.1041 -0.0658 4.9624 12 6 4.1015 -0.3654 6.4392 13 1 3.5339 -1.2019 6.8195 14 6 4.8238 0.4282 7.3049 15 7 5.5154 1.4464 6.8418 16 14 4.8200 0.0572 9.1357 17 1 5.9326 -0.8732 9.4545 18 1 4.9969 1.3198 9.8970 19 1 3.5273 -0.5701 9.5110 20 7 2.0196 -0.6924 -1.1995 21 6 1.5742 -2.0916 -1.2181 22 6 1.9770 -2.7389 -2.5450 23 6 3.4984 -2.6660 -2.7017 24 6 3.9415 -1.2021 -2.6303 25 1 3.4964 -0.6465 -3.4558 26 6 5.4665 -1.1247 -2.7260 27 6 3.4816 -0.5993 -1.3010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6095 -1.7217 1.2922 32 1 3.1268 -0.7948 1.2080 33 1 1.3632 0.9557 2.3617 34 1 4.2540 -2.2505 2.8581 35 1 4.6191 -2.6228 4.5598 36 1 3.0501 -3.0927 3.8628 37 1 5.1242 -0.1214 4.5821 38 1 3.7077 0.9355 4.7941 39 1 6.0232 2.0050 7.4509 40 1 2.0399 -2.6320 -0.3941 41 1 0.4901 -2.1291 -1.1103 42 1 1.6600 -3.7817 -2.5523 43 1 1.4999 -2.2078 -3.3687 44 1 3.9746 -3.2302 -1.8998 45 1 3.7861 -3.0881 -3.6646 46 1 5.7937 -1.5573 -3.6714 47 1 5.7813 -0.0823 -2.6747 48 1 5.9110 -1.6792 -1.8995 49 1 3.7830 0.4472 -1.2531 50 1 3.9385 -1.1467 -0.4766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045744872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:41 Heat of formation + Delta-G solvation = -86.036794 kcal Electronic energy + Delta-G solvation = -28677.813198 eV Core-core repulsion = 24866.217153 eV Total energy + Delta-G solvation = -3811.596045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93697 -36.75410 -36.41384 -35.50523 -35.17256 -33.73608 -32.44684 -32.12242 -30.09488 -27.80046 -26.80349 -25.99599 -25.07504 -24.24317 -22.56862 -22.29990 -20.40376 -19.53916 -18.96746 -17.38624 -16.75066 -16.45814 -16.17380 -15.81505 -15.56036 -15.13019 -14.88896 -14.60293 -14.36116 -14.07511 -13.74327 -13.48985 -13.32870 -13.27861 -13.06684 -12.73507 -12.36864 -12.29800 -12.18686 -12.10820 -11.83556 -11.67359 -11.61071 -11.46056 -11.39628 -11.24567 -11.18689 -11.11592 -11.07920 -10.79870 -10.70869 -10.52781 -10.44167 -10.43252 -10.04157 -9.78228 -9.33574 -8.47540 -8.44511 -8.08125 -6.07645 -4.11731 1.22249 3.30732 3.37139 3.41654 3.44655 3.71184 4.13730 4.43844 4.45970 4.55018 4.59075 4.74976 4.77121 4.94937 5.05326 5.12935 5.13248 5.21566 5.27686 5.32945 5.36027 5.42707 5.48547 5.51482 5.56403 5.58789 5.63928 5.70266 5.73936 5.80887 5.83822 5.90227 5.92249 5.96009 5.98328 6.05526 6.13166 6.21767 6.26765 6.52732 6.89010 6.91514 7.08294 7.24421 7.40455 7.59427 7.89864 8.19077 8.90683 9.53600 11.00989 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.003196 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.162898 B = 8757.615685 C = 9539.294064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 H 0.091 0.909 4 C 0.089 3.911 5 N -1.129 6.129 6 S 2.782 3.218 7 O -0.964 6.964 8 O -0.999 6.999 9 N -0.996 5.996 10 C 0.095 3.905 11 C 0.258 3.742 12 C -0.530 4.530 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.526 5.526 21 C 0.042 3.958 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.088 4.088 25 H 0.077 0.923 26 C -0.148 4.148 27 C 0.053 3.947 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.076 0.924 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -5.483 -21.596 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 H 0.109 0.891 4 C -0.040 4.040 5 N -0.888 5.888 6 S 2.789 3.211 7 O -0.947 6.947 8 O -0.982 6.982 9 N -0.839 5.839 10 C -0.051 4.051 11 C 0.136 3.864 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.250 5.250 21 C -0.085 4.085 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.106 4.106 25 H 0.095 0.905 26 C -0.206 4.206 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.963 -5.486 -21.382 22.626 hybrid contribution 0.794 -0.024 1.521 1.716 sum -4.169 -5.511 -19.861 21.028 Atomic orbital electron populations 1.21882 0.93681 1.02530 1.02254 1.21925 0.96461 0.98462 0.86500 0.89135 1.21937 0.99624 0.96295 0.86110 1.56156 1.83977 1.25040 1.23674 1.01937 0.73451 0.73240 0.72471 1.93645 1.81595 1.60816 1.58674 1.93516 1.73248 1.44615 1.86836 1.57591 1.31020 1.24451 1.70808 1.21347 0.99990 0.84840 0.98957 1.19043 0.90218 0.85818 0.91321 1.21497 1.29571 1.13832 0.92016 0.92175 1.24932 0.95120 0.94778 0.99190 1.69915 1.31004 1.17220 1.35355 0.86506 0.78500 0.77775 0.84744 1.20605 1.21025 1.19683 1.62227 1.11156 1.14436 1.37159 1.22257 1.01032 0.88061 0.97182 1.21575 0.95995 1.00114 0.97674 1.21664 0.95860 0.96260 1.01742 1.21146 0.95489 0.96183 0.97825 0.90477 1.21808 0.95017 1.01961 1.01789 1.22239 0.87193 1.01213 0.96856 0.91729 0.91689 0.92244 0.90568 0.92036 0.75469 0.94635 0.90327 0.91632 0.94786 0.94449 0.92677 0.94277 0.90105 0.91588 0.91219 0.92123 0.91941 0.92562 0.92492 0.92601 0.90557 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.89 37.16 0.33 -1.08 16 2 C 0.08 0.78 2.46 -67.72 -0.17 0.61 16 3 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 4 C 0.09 1.10 4.92 -4.04 -0.02 1.08 16 5 N -1.13 -16.45 5.55 -10.62 -0.06 -16.51 16 6 S 2.78 54.99 6.10 -107.50 -0.66 54.34 16 7 O -0.96 -23.08 17.11 -57.17 -0.98 -24.05 16 8 O -1.00 -20.73 16.19 -57.17 -0.93 -21.66 16 9 N -1.00 -20.65 3.23 -123.05 -0.40 -21.05 16 10 C 0.10 1.64 10.68 59.85 0.64 2.28 16 11 C 0.26 6.48 5.08 -5.19 -0.03 6.45 16 12 C -0.53 -14.97 9.38 -34.45 -0.32 -15.30 16 13 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 16 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 N -0.53 -5.04 4.64 -226.70 -1.05 -6.09 16 21 C 0.04 0.39 4.63 -3.83 -0.02 0.37 16 22 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 23 C -0.12 -0.89 5.29 -26.61 -0.14 -1.04 16 24 C -0.09 -0.70 2.88 -90.54 -0.26 -0.96 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 C -0.15 -1.08 9.20 37.16 0.34 -0.74 16 27 C 0.05 0.49 4.33 -3.83 -0.02 0.47 16 28 H 0.06 0.64 7.56 -51.93 -0.39 0.24 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.58 6.31 -51.93 -0.33 0.25 16 31 H 0.08 0.98 6.36 -51.93 -0.33 0.65 16 32 H 0.06 0.76 6.45 -51.93 -0.33 0.42 16 33 H 0.41 5.26 8.44 -34.47 -0.29 4.97 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 36 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 37 H 0.03 0.86 8.11 -51.92 -0.42 0.44 16 38 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.04 0.39 6.72 -51.93 -0.35 0.04 16 41 H 0.08 0.72 6.05 -51.93 -0.31 0.41 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.70 8.07 -51.93 -0.42 0.29 16 50 H 0.04 0.40 6.64 -51.93 -0.34 0.06 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -33.21 395.25 -11.21 -44.42 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.89 Total: 0.41 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.08 Total: -7.24 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -0.77 Total: -69.08 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.90 Total: -45.71 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.66 Total: 54.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.21 -11.21 -44.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045744872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.612 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds