Wall clock time and date at job start Tue Mar 31 2020 17:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46707 * 2 1 4 4 C 1.52995 * 109.47330 * 120.00277 * 2 1 3 5 5 N 1.46500 * 109.47235 * 295.29352 * 4 2 1 6 6 S 1.65597 * 120.00097 * 163.12867 * 5 4 2 7 7 O 1.42099 * 106.40065 * 178.54189 * 6 5 4 8 8 O 1.42100 * 106.40383 * 311.46261 * 6 5 4 9 9 N 1.65601 * 107.21836 * 65.00424 * 6 5 4 10 10 C 1.46500 * 119.99859 * 270.00212 * 9 6 5 11 11 C 1.46505 * 119.99792 * 89.99873 * 9 6 5 12 12 C 1.50693 * 109.47283 * 95.00408 * 11 9 6 13 13 H 1.08004 * 119.99650 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00144 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00049 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99977 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47063 * 90.00162 * 16 14 12 18 18 H 1.48502 * 109.47015 * 210.00247 * 16 14 12 19 19 H 1.48506 * 109.47271 * 330.00002 * 16 14 12 20 20 N 1.46900 * 109.47040 * 240.00471 * 2 1 3 21 21 C 1.46849 * 110.99802 * 298.70665 * 20 2 1 22 22 C 1.53037 * 109.52337 * 174.15960 * 21 20 2 23 23 C 1.53122 * 109.27695 * 59.18014 * 22 21 20 24 24 C 1.53118 * 109.16274 * 302.34718 * 23 22 21 25 25 H 1.09001 * 109.50154 * 297.67097 * 24 23 22 26 26 C 1.52995 * 109.50378 * 177.59649 * 24 23 22 27 27 C 1.46849 * 111.00143 * 174.49940 * 20 2 1 28 28 H 1.09003 * 109.47136 * 299.99916 * 1 2 3 29 29 H 1.08999 * 109.47514 * 59.99712 * 1 2 3 30 30 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47030 * 55.29411 * 4 2 1 32 32 H 1.09004 * 109.47406 * 175.29609 * 4 2 1 33 33 H 0.96998 * 120.00060 * 343.13843 * 5 4 2 34 34 H 1.08993 * 109.47084 * 90.00187 * 10 9 6 35 35 H 1.09001 * 109.46934 * 209.99522 * 10 9 6 36 36 H 1.08999 * 109.47031 * 329.99663 * 10 9 6 37 37 H 1.09007 * 109.46594 * 215.00100 * 11 9 6 38 38 H 1.08997 * 109.47251 * 334.99828 * 11 9 6 39 39 H 0.96996 * 120.00145 * 179.97438 * 15 14 12 40 40 H 1.08992 * 109.46410 * 294.18139 * 21 20 2 41 41 H 1.09003 * 109.46239 * 54.15866 * 21 20 2 42 42 H 1.08994 * 109.50729 * 179.12286 * 22 21 20 43 43 H 1.09002 * 109.50327 * 299.20381 * 22 21 20 44 44 H 1.08997 * 109.52114 * 62.25022 * 23 22 21 45 45 H 1.08998 * 109.52448 * 182.37772 * 23 22 21 46 46 H 1.08999 * 109.47475 * 59.99900 * 26 24 23 47 47 H 1.09006 * 109.47194 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.47248 * 299.99774 * 26 24 23 49 49 H 1.09000 * 109.45760 * 305.85569 * 27 20 2 50 50 H 1.08998 * 109.46273 * 65.81986 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6464 0.0316 2.4427 6 16 1.6848 -0.6953 3.9301 7 8 1.2860 0.2930 4.8700 8 8 1.0199 -1.9426 3.7845 9 7 3.2686 -1.0457 4.2638 10 6 3.8341 -2.3355 3.8603 11 6 4.1041 -0.0658 4.9624 12 6 4.1015 -0.3654 6.4392 13 1 3.5339 -1.2019 6.8195 14 6 4.8238 0.4282 7.3049 15 7 5.5154 1.4464 6.8418 16 14 4.8200 0.0572 9.1357 17 1 5.9326 -0.8732 9.4545 18 1 4.9969 1.3198 9.8970 19 1 3.5273 -0.5701 9.5110 20 7 2.0196 -0.6924 -1.1995 21 6 1.5742 -2.0916 -1.2181 22 6 1.9770 -2.7389 -2.5450 23 6 3.4984 -2.6660 -2.7017 24 6 3.9415 -1.2021 -2.6303 25 1 3.4964 -0.6465 -3.4558 26 6 5.4665 -1.1247 -2.7260 27 6 3.4816 -0.5993 -1.3010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6095 -1.7217 1.2922 32 1 3.1268 -0.7948 1.2080 33 1 1.3632 0.9557 2.3617 34 1 4.2540 -2.2505 2.8581 35 1 4.6191 -2.6228 4.5598 36 1 3.0501 -3.0927 3.8628 37 1 5.1242 -0.1214 4.5821 38 1 3.7077 0.9355 4.7941 39 1 6.0232 2.0050 7.4509 40 1 2.0399 -2.6320 -0.3941 41 1 0.4901 -2.1291 -1.1103 42 1 1.6600 -3.7817 -2.5523 43 1 1.4999 -2.2078 -3.3687 44 1 3.9746 -3.2302 -1.8998 45 1 3.7861 -3.0881 -3.6646 46 1 5.7937 -1.5573 -3.6714 47 1 5.7813 -0.0823 -2.6747 48 1 5.9110 -1.6792 -1.8995 49 1 3.7830 0.4472 -1.2531 50 1 3.9385 -1.1467 -0.4766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045744872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:40 Heat of formation + Delta-G solvation = -110.398652 kcal Electronic energy + Delta-G solvation = -28678.869607 eV Core-core repulsion = 24866.217153 eV Total energy + Delta-G solvation = -3812.652454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69992 -38.33533 -37.42186 -37.23683 -36.89038 -34.71414 -34.52271 -32.80574 -30.90132 -29.70638 -27.49013 -27.01439 -26.75541 -24.99997 -24.24492 -23.24650 -21.17994 -20.43163 -20.29484 -19.04189 -18.45991 -18.25923 -17.46324 -16.83026 -16.74208 -16.33064 -16.09895 -15.81206 -15.32209 -15.14466 -14.98067 -14.74749 -14.50886 -14.18744 -14.11620 -13.99785 -13.87343 -13.38078 -13.35855 -13.19005 -13.11550 -13.07554 -13.03145 -12.94335 -12.79638 -12.50949 -12.47455 -12.40880 -12.28065 -12.02345 -11.97362 -11.83321 -11.78308 -11.46238 -11.11412 -11.07629 -10.62715 -10.52647 -9.84908 -9.25023 -8.22640 -6.34755 -0.35647 1.37631 1.40052 1.50668 1.98987 2.38682 2.57951 2.91522 3.08300 3.41011 3.68346 3.84538 3.87162 4.00300 4.04481 4.06118 4.25002 4.27278 4.38155 4.43291 4.52242 4.61258 4.65519 4.71727 4.74923 4.77319 4.79140 4.82244 4.90264 4.95622 4.98748 5.01409 5.08337 5.15447 5.16603 5.19327 5.27215 5.30179 5.37602 5.42551 5.43417 5.58842 5.66226 5.81933 6.04301 6.08992 6.15986 6.16687 6.73351 7.34317 8.84970 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.003196 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.162898 B = 8757.615685 C = 9539.294064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.096 0.904 4 C 0.086 3.914 5 N -1.112 6.112 6 S 2.798 3.202 7 O -1.010 7.010 8 O -1.009 7.009 9 N -1.003 6.003 10 C 0.089 3.911 11 C 0.273 3.727 12 C -0.552 4.552 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.957 3.043 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.275 1.275 20 N -0.522 5.522 21 C 0.038 3.962 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.084 4.084 25 H 0.076 0.924 26 C -0.146 4.146 27 C 0.049 3.951 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.423 0.577 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.017 0.983 39 H 0.268 0.732 40 H 0.030 0.970 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -6.156 -22.797 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 H 0.114 0.886 4 C -0.042 4.042 5 N -0.876 5.876 6 S 2.805 3.195 7 O -0.994 6.994 8 O -0.992 6.992 9 N -0.845 5.845 10 C -0.056 4.056 11 C 0.149 3.851 12 C -0.592 4.592 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.200 1.200 20 N -0.246 5.246 21 C -0.089 4.089 22 C -0.150 4.150 23 C -0.154 4.154 24 C -0.102 4.102 25 H 0.095 0.905 26 C -0.203 4.203 27 C -0.078 4.078 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.892 -6.180 -22.597 23.932 hybrid contribution 0.753 0.158 1.784 1.943 sum -4.140 -6.022 -20.813 22.059 Atomic orbital electron populations 1.21885 0.93145 1.02600 1.02655 1.21918 0.96876 0.98523 0.85608 0.88584 1.22159 0.99974 0.96226 0.85851 1.55671 1.83637 1.25667 1.22649 1.01234 0.72904 0.72522 0.72815 1.93577 1.82377 1.62090 1.61318 1.93497 1.73304 1.45188 1.87222 1.57481 1.30763 1.25075 1.71164 1.21561 1.00161 0.83409 1.00511 1.18600 0.90252 0.85853 0.90347 1.21839 1.29617 1.13776 0.93928 0.93070 1.25741 0.94757 0.94627 1.03556 1.70000 1.31494 1.17885 1.36890 0.85579 0.78662 0.78053 0.79575 1.18978 1.20262 1.19977 1.62293 1.11376 1.14759 1.36188 1.22335 1.01137 0.87717 0.97755 1.21559 0.96077 1.00576 0.96771 1.21663 0.95701 0.95900 1.02156 1.21115 0.95875 0.96346 0.96912 0.90513 1.21788 0.94481 1.01978 1.02097 1.22301 0.86925 1.01217 0.97378 0.92043 0.90596 0.92353 0.90824 0.91696 0.74162 0.91347 0.90973 0.90761 0.95369 0.96499 0.92306 0.95166 0.89887 0.90600 0.91070 0.92669 0.90813 0.91593 0.92509 0.93123 0.90608 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.89 71.98 0.64 -1.95 16 2 C 0.08 1.54 2.46 44.91 0.11 1.65 16 3 H 0.10 1.74 8.07 -2.38 -0.02 1.72 16 4 C 0.09 2.02 4.92 86.38 0.42 2.45 16 5 N -1.11 -31.69 5.55 -187.50 -1.04 -32.73 16 6 S 2.80 110.63 6.10 -56.49 -0.34 110.28 16 7 O -1.01 -49.27 17.11 -128.00 -2.19 -51.46 16 8 O -1.01 -41.34 16.19 -128.00 -2.07 -43.42 16 9 N -1.00 -41.59 3.23 -543.23 -1.75 -43.34 16 10 C 0.09 2.98 10.68 127.77 1.36 4.35 16 11 C 0.27 13.93 5.08 85.63 0.43 14.36 16 12 C -0.55 -31.60 9.38 25.60 0.24 -31.36 16 13 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.92 -54.21 13.29 21.45 0.28 -53.93 16 16 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 20 N -0.52 -9.18 4.64 -871.13 -4.04 -13.22 16 21 C 0.04 0.64 4.63 86.33 0.40 1.04 16 22 C -0.11 -1.52 6.09 30.65 0.19 -1.33 16 23 C -0.12 -1.55 5.29 30.67 0.16 -1.39 16 24 C -0.08 -1.20 2.88 -10.74 -0.03 -1.23 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 C -0.15 -1.90 9.20 71.98 0.66 -1.24 16 27 C 0.05 0.85 4.33 86.32 0.37 1.22 16 28 H 0.06 1.13 7.56 -2.39 -0.02 1.11 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.05 6.31 -2.39 -0.02 1.03 16 31 H 0.07 1.81 6.36 -2.39 -0.02 1.79 16 32 H 0.06 1.51 6.45 -2.39 -0.02 1.49 16 33 H 0.42 10.51 8.44 -96.75 -0.82 9.69 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 36 H 0.07 2.35 7.02 -2.39 -0.02 2.33 16 37 H 0.03 1.45 8.11 -2.38 -0.02 1.44 16 38 H 0.02 0.93 7.61 -2.39 -0.02 0.91 16 39 H 0.27 14.77 8.31 -92.71 -0.77 13.99 16 40 H 0.03 0.56 6.72 -2.39 -0.02 0.54 16 41 H 0.08 1.35 6.05 -2.39 -0.01 1.34 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 50 H 0.03 0.60 6.64 -2.39 -0.02 0.58 16 Total: -1.00 -70.40 395.25 -3.60 -74.00 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.09 Total: 19.19 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.43 Total: -12.24 kcal Atomic # 7 Polarization: -136.67 SS G_CDS: -6.55 Total: -143.22 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: -4.26 Total: -94.88 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 110.63 SS G_CDS: -0.34 Total: 110.28 kcal Total: -70.40 -3.60 -74.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045744872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.399 kcal (2) G-P(sol) polarization free energy of solvation -70.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds