Wall clock time and date at job start Tue Mar 31 2020 18:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00402 * 2 1 4 4 H 1.48501 * 109.47373 * 270.00199 * 3 2 1 5 5 H 1.48508 * 109.46769 * 30.00000 * 3 2 1 6 6 H 1.48503 * 109.47159 * 149.99644 * 3 2 1 7 7 C 1.38817 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99925 * 195.48557 * 7 2 1 9 9 N 1.36935 * 119.99548 * 15.48691 * 7 2 1 10 10 C 1.47083 * 120.88166 * 208.03282 * 9 7 2 11 11 C 1.53236 * 108.52571 * 231.16754 * 10 9 7 12 12 N 1.46899 * 109.33412 * 306.16972 * 11 10 9 13 13 C 1.46903 * 111.00013 * 187.25432 * 12 11 10 14 14 C 1.50701 * 109.47641 * 169.99832 * 13 12 11 15 15 C 1.38344 * 120.04935 * 97.77528 * 14 13 12 16 16 F 1.35103 * 119.98643 * 359.97438 * 15 14 13 17 17 C 1.38492 * 120.02387 * 180.02562 * 15 14 13 18 18 C 1.38272 * 120.12435 * 0.02562 * 17 15 14 19 19 C 1.38091 * 120.09540 * 359.96150 * 18 17 15 20 20 C 1.38846 * 120.04616 * 277.71531 * 14 13 12 21 21 N 1.39670 * 120.06595 * 0.04137 * 20 14 13 22 22 C 1.48535 * 110.99784 * 126.82227 * 21 20 14 23 23 C 1.54937 * 103.22438 * 159.72390 * 22 21 20 24 24 C 1.54597 * 102.92301 * 322.58410 * 23 22 21 25 25 C 1.47895 * 111.00176 * 244.21822 * 21 20 14 26 26 C 1.46903 * 111.27313 * 63.10599 * 12 11 10 27 27 C 1.47079 * 120.88264 * 28.01484 * 9 7 2 28 28 H 0.97004 * 119.99332 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.63214 * 111.45050 * 10 9 7 30 30 H 1.09006 * 109.78777 * 350.97032 * 10 9 7 31 31 H 1.08991 * 109.49365 * 186.21157 * 11 10 9 32 32 H 1.08998 * 109.49222 * 66.12396 * 11 10 9 33 33 H 1.09002 * 109.46979 * 49.99316 * 13 12 11 34 34 H 1.08999 * 109.46801 * 290.00231 * 13 12 11 35 35 H 1.07994 * 119.93861 * 179.97438 * 17 15 14 36 36 H 1.07994 * 119.95183 * 179.97438 * 18 17 15 37 37 H 1.08007 * 120.01241 * 179.74058 * 19 18 17 38 38 H 1.09002 * 110.66866 * 278.15624 * 22 21 20 39 39 H 1.08993 * 110.66895 * 41.28996 * 22 21 20 40 40 H 1.08998 * 110.72697 * 204.22871 * 23 22 21 41 41 H 1.09004 * 110.72611 * 80.94306 * 23 22 21 42 42 H 1.08997 * 110.30865 * 263.04796 * 24 23 22 43 43 H 1.09001 * 110.31304 * 140.87044 * 24 23 22 44 44 H 1.09001 * 109.91442 * 333.51324 * 25 21 20 45 45 H 1.09001 * 109.91525 * 94.80110 * 25 21 20 46 46 H 1.08993 * 109.49097 * 56.84978 * 26 12 11 47 47 H 1.09000 * 109.49036 * 176.93714 * 26 12 11 48 48 H 1.09009 * 109.62492 * 248.54218 * 27 9 7 49 49 H 1.08993 * 109.63066 * 8.93084 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0609 -1.2190 0.2503 9 7 1.3628 -2.3666 -0.3156 10 6 1.8160 -3.6548 0.2308 11 6 1.9795 -4.6446 -0.9275 12 7 0.7303 -4.7018 -1.6983 13 6 0.7856 -5.7633 -2.7123 14 6 -0.5833 -5.9571 -3.3120 15 6 -0.9039 -5.3550 -4.5156 16 9 0.0105 -4.5922 -5.1538 17 6 -2.1623 -5.5330 -5.0659 18 6 -3.1008 -6.3118 -4.4144 19 6 -2.7861 -6.9153 -3.2129 20 6 -1.5242 -6.7412 -2.6580 21 7 -1.2039 -7.3509 -1.4429 22 6 -2.2093 -7.0209 -0.4005 23 6 -2.0140 -8.1442 0.6486 24 6 -1.7228 -9.3861 -0.2247 25 6 -1.2220 -8.8245 -1.5683 26 6 0.4227 -3.4031 -2.3119 27 6 0.1954 -2.3624 -1.2103 28 1 -0.4849 0.8401 -0.0004 29 1 1.0760 -4.0345 0.9353 30 1 2.7717 -3.5244 0.7387 31 1 2.2080 -5.6338 -0.5311 32 1 2.7919 -4.3152 -1.5754 33 1 1.1136 -6.6931 -2.2475 34 1 1.4889 -5.4809 -3.4958 35 1 -2.4112 -5.0620 -6.0053 36 1 -4.0814 -6.4484 -4.8459 37 1 -3.5216 -7.5199 -2.7030 38 1 -2.0026 -6.0447 0.0381 39 1 -3.2171 -7.0522 -0.8144 40 1 -2.9226 -8.2883 1.2332 41 1 -1.1672 -7.9223 1.2982 42 1 -2.6335 -9.9662 -0.3732 43 1 -0.9521 -10.0022 0.2385 44 1 -1.8985 -9.1206 -2.3700 45 1 -0.2164 -9.1920 -1.7727 46 1 1.2567 -3.0911 -2.9405 47 1 -0.4779 -3.4921 -2.9195 48 1 -0.7005 -2.6179 -0.6444 49 1 0.0783 -1.3741 -1.6548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:39 Heat of formation + Delta-G solvation = 30.748183 kcal Electronic energy + Delta-G solvation = -30301.597777 eV Core-core repulsion = 26371.994747 eV Total energy + Delta-G solvation = -3929.603030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.80465 -40.37056 -38.08081 -37.40872 -34.49329 -32.69888 -31.77857 -30.40582 -29.78395 -28.95048 -28.60615 -26.91544 -24.59202 -23.34916 -22.54168 -22.37300 -21.04892 -20.92798 -20.65766 -18.94587 -17.65307 -16.91334 -16.57189 -15.93427 -15.74941 -15.64002 -15.50905 -14.86532 -14.34716 -14.26147 -14.07411 -13.92172 -13.54436 -13.34272 -13.14257 -12.99003 -12.90869 -12.82161 -12.43590 -12.24435 -11.98807 -11.81570 -11.47393 -11.39962 -11.28948 -11.20525 -11.04893 -10.94650 -10.69390 -10.67674 -10.36713 -10.18254 -9.95225 -9.66559 -9.52621 -8.75790 -8.62916 -8.48486 -8.42134 -7.60726 -6.55047 -5.70082 -3.12529 1.08631 1.17642 3.42544 3.45163 3.49043 3.50272 3.73817 4.38509 4.54083 4.55411 4.63693 4.70684 4.75384 4.84355 4.90469 4.95719 5.17984 5.25773 5.36859 5.41122 5.47135 5.57403 5.60047 5.65516 5.67344 5.72988 5.83873 5.88088 6.01626 6.05438 6.07182 6.07343 6.09109 6.15103 6.23232 6.30065 6.40428 6.42856 6.50437 6.65335 6.74183 6.77505 6.83923 7.05326 7.34989 7.37221 7.75208 7.77706 7.83683 7.93917 8.52833 9.29947 9.93346 10.53034 11.38476 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003825 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.537037 B = 7319.263312 C = 8359.738912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.152 3.848 11 C 0.048 3.952 12 N -0.513 5.513 13 C 0.104 3.896 14 C -0.080 4.080 15 C 0.109 3.891 16 F -0.135 7.135 17 C -0.160 4.160 18 C -0.086 4.086 19 C -0.166 4.166 20 C 0.132 3.868 21 N -0.468 5.468 22 C 0.043 3.957 23 C -0.122 4.122 24 C -0.130 4.130 25 C 0.038 3.962 26 C 0.037 3.963 27 C 0.183 3.817 28 H 0.253 0.747 29 H 0.025 0.975 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.088 0.912 34 H 0.030 0.970 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.022 0.978 47 H 0.053 0.947 48 H 0.023 0.977 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 -19.814 -6.450 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.025 3.975 11 C -0.081 4.081 12 N -0.237 5.237 13 C -0.024 4.024 14 C -0.082 4.082 15 C 0.089 3.911 16 F -0.113 7.113 17 C -0.179 4.179 18 C -0.105 4.105 19 C -0.187 4.187 20 C 0.037 3.963 21 N -0.189 5.189 22 C -0.083 4.083 23 C -0.160 4.160 24 C -0.168 4.168 25 C -0.088 4.088 26 C -0.093 4.093 27 C 0.057 3.943 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.042 0.958 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.509 -19.554 -5.947 21.450 hybrid contribution 0.293 1.011 -1.101 1.523 sum -6.216 -18.544 -7.048 20.789 Atomic orbital electron populations 1.70026 1.05187 1.25291 1.54356 1.25045 0.95303 0.98256 1.01054 0.86300 0.79075 0.83829 0.77622 1.21557 1.21780 1.20488 1.19203 0.92021 0.84650 1.42082 0.91779 1.44095 1.33926 1.01749 1.52036 1.20946 0.97586 0.86372 0.92599 1.22580 0.89405 0.99379 0.96737 1.61954 1.34081 1.04233 1.23438 1.20766 0.90605 0.97201 0.93800 1.19725 0.98101 0.97443 0.92937 1.17503 0.87429 0.93865 0.92338 1.91511 1.65708 1.73117 1.80985 1.21098 0.92456 1.02415 1.01963 1.20761 0.98842 0.96230 0.94706 1.21648 0.97373 1.02517 0.97133 1.18467 0.91319 0.95610 0.90881 1.62312 1.46935 1.05850 1.03816 1.23346 0.92762 1.00612 0.91567 1.22481 1.02177 0.93898 0.97485 1.22397 1.01031 0.98024 0.95318 1.22983 1.01506 0.87147 0.97170 1.22888 0.98399 0.89908 0.98065 1.20789 0.88843 0.95985 0.88691 0.93736 0.95724 0.92862 0.91941 0.95814 0.89422 0.95184 0.84912 0.85329 0.85813 0.88686 0.93565 0.91069 0.90281 0.91689 0.90942 0.93563 0.90276 0.95922 0.92822 0.95847 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 11.16 55.49 0.62 -26.35 16 2 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 3 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -7.10 9.63 -15.06 -0.14 -7.24 16 8 H 0.06 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.65 3.03 -172.01 -0.52 -16.17 16 10 C 0.15 3.36 6.69 -3.60 -0.02 3.33 16 11 C 0.05 0.92 5.62 -3.70 -0.02 0.90 16 12 N -0.51 -9.71 4.62 -235.77 -1.09 -10.80 16 13 C 0.10 1.69 4.65 -4.97 -0.02 1.66 16 14 C -0.08 -1.20 4.67 -104.36 -0.49 -1.69 16 15 C 0.11 1.61 6.03 -39.45 -0.24 1.37 16 16 F -0.13 -2.19 15.90 2.25 0.04 -2.15 16 17 C -0.16 -1.95 10.02 -39.47 -0.40 -2.34 16 18 C -0.09 -0.92 10.04 -39.62 -0.40 -1.31 16 19 C -0.17 -1.88 7.98 -39.37 -0.31 -2.20 16 20 C 0.13 1.76 4.81 -83.80 -0.40 1.36 16 21 N -0.47 -5.83 4.37 -167.18 -0.73 -6.56 16 22 C 0.04 0.51 6.39 -1.90 -0.01 0.50 16 23 C -0.12 -1.15 7.06 -24.87 -0.18 -1.33 16 24 C -0.13 -1.06 6.93 -25.37 -0.18 -1.24 16 25 C 0.04 0.37 6.54 -2.76 -0.02 0.36 16 26 C 0.04 0.78 5.19 -3.70 -0.02 0.77 16 27 C 0.18 4.67 5.40 -3.60 -0.02 4.65 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.13 7.96 -51.93 -0.41 0.72 16 31 H 0.06 1.03 7.99 -51.93 -0.41 0.62 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.33 7.55 -51.93 -0.39 0.94 16 34 H 0.03 0.51 7.41 -51.93 -0.38 0.12 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.17 7.00 -52.48 -0.37 0.81 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.05 0.50 6.37 -51.93 -0.33 0.17 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.43 6.99 -51.93 -0.36 0.06 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 1.11 5.96 -51.93 -0.31 0.81 16 48 H 0.02 0.64 8.14 -51.92 -0.42 0.22 16 49 H 0.08 2.39 6.17 -51.93 -0.32 2.07 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -31.01 379.70 -11.87 -42.87 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.92 Total: -1.31 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.96 Total: -2.50 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -1.72 Total: -59.88 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.01 -11.87 -42.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.622 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds