Wall clock time and date at job start Tue Mar 31 2020 18:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00402 * 2 1 4 4 H 1.48501 * 109.47373 * 270.00199 * 3 2 1 5 5 H 1.48508 * 109.46769 * 30.00000 * 3 2 1 6 6 H 1.48503 * 109.47159 * 149.99644 * 3 2 1 7 7 C 1.38817 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99925 * 195.48557 * 7 2 1 9 9 N 1.36935 * 119.99548 * 15.48691 * 7 2 1 10 10 C 1.47083 * 120.88166 * 208.03282 * 9 7 2 11 11 C 1.53236 * 108.52571 * 231.16754 * 10 9 7 12 12 N 1.46899 * 109.33412 * 306.16972 * 11 10 9 13 13 C 1.46903 * 111.00013 * 187.25432 * 12 11 10 14 14 C 1.50701 * 109.47641 * 169.99832 * 13 12 11 15 15 C 1.38344 * 120.04935 * 97.77528 * 14 13 12 16 16 F 1.35103 * 119.98643 * 359.97438 * 15 14 13 17 17 C 1.38492 * 120.02387 * 180.02562 * 15 14 13 18 18 C 1.38272 * 120.12435 * 0.02562 * 17 15 14 19 19 C 1.38091 * 120.09540 * 359.96150 * 18 17 15 20 20 C 1.38846 * 120.04616 * 277.71531 * 14 13 12 21 21 N 1.39670 * 120.06595 * 0.04137 * 20 14 13 22 22 C 1.48535 * 110.99784 * 126.82227 * 21 20 14 23 23 C 1.54937 * 103.22438 * 159.72390 * 22 21 20 24 24 C 1.54597 * 102.92301 * 322.58410 * 23 22 21 25 25 C 1.47895 * 111.00176 * 244.21822 * 21 20 14 26 26 C 1.46903 * 111.27313 * 63.10599 * 12 11 10 27 27 C 1.47079 * 120.88264 * 28.01484 * 9 7 2 28 28 H 0.97004 * 119.99332 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.63214 * 111.45050 * 10 9 7 30 30 H 1.09006 * 109.78777 * 350.97032 * 10 9 7 31 31 H 1.08991 * 109.49365 * 186.21157 * 11 10 9 32 32 H 1.08998 * 109.49222 * 66.12396 * 11 10 9 33 33 H 1.09002 * 109.46979 * 49.99316 * 13 12 11 34 34 H 1.08999 * 109.46801 * 290.00231 * 13 12 11 35 35 H 1.07994 * 119.93861 * 179.97438 * 17 15 14 36 36 H 1.07994 * 119.95183 * 179.97438 * 18 17 15 37 37 H 1.08007 * 120.01241 * 179.74058 * 19 18 17 38 38 H 1.09002 * 110.66866 * 278.15624 * 22 21 20 39 39 H 1.08993 * 110.66895 * 41.28996 * 22 21 20 40 40 H 1.08998 * 110.72697 * 204.22871 * 23 22 21 41 41 H 1.09004 * 110.72611 * 80.94306 * 23 22 21 42 42 H 1.08997 * 110.30865 * 263.04796 * 24 23 22 43 43 H 1.09001 * 110.31304 * 140.87044 * 24 23 22 44 44 H 1.09001 * 109.91442 * 333.51324 * 25 21 20 45 45 H 1.09001 * 109.91525 * 94.80110 * 25 21 20 46 46 H 1.08993 * 109.49097 * 56.84978 * 26 12 11 47 47 H 1.09000 * 109.49036 * 176.93714 * 26 12 11 48 48 H 1.09009 * 109.62492 * 248.54218 * 27 9 7 49 49 H 1.08993 * 109.63066 * 8.93084 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0609 -1.2190 0.2503 9 7 1.3628 -2.3666 -0.3156 10 6 1.8160 -3.6548 0.2308 11 6 1.9795 -4.6446 -0.9275 12 7 0.7303 -4.7018 -1.6983 13 6 0.7856 -5.7633 -2.7123 14 6 -0.5833 -5.9571 -3.3120 15 6 -0.9039 -5.3550 -4.5156 16 9 0.0105 -4.5922 -5.1538 17 6 -2.1623 -5.5330 -5.0659 18 6 -3.1008 -6.3118 -4.4144 19 6 -2.7861 -6.9153 -3.2129 20 6 -1.5242 -6.7412 -2.6580 21 7 -1.2039 -7.3509 -1.4429 22 6 -2.2093 -7.0209 -0.4005 23 6 -2.0140 -8.1442 0.6486 24 6 -1.7228 -9.3861 -0.2247 25 6 -1.2220 -8.8245 -1.5683 26 6 0.4227 -3.4031 -2.3119 27 6 0.1954 -2.3624 -1.2103 28 1 -0.4849 0.8401 -0.0004 29 1 1.0760 -4.0345 0.9353 30 1 2.7717 -3.5244 0.7387 31 1 2.2080 -5.6338 -0.5311 32 1 2.7919 -4.3152 -1.5754 33 1 1.1136 -6.6931 -2.2475 34 1 1.4889 -5.4809 -3.4958 35 1 -2.4112 -5.0620 -6.0053 36 1 -4.0814 -6.4484 -4.8459 37 1 -3.5216 -7.5199 -2.7030 38 1 -2.0026 -6.0447 0.0381 39 1 -3.2171 -7.0522 -0.8144 40 1 -2.9226 -8.2883 1.2332 41 1 -1.1672 -7.9223 1.2982 42 1 -2.6335 -9.9662 -0.3732 43 1 -0.9521 -10.0022 0.2385 44 1 -1.8985 -9.1206 -2.3700 45 1 -0.2164 -9.1920 -1.7727 46 1 1.2567 -3.0911 -2.9405 47 1 -0.4779 -3.4921 -2.9195 48 1 -0.7005 -2.6179 -0.6444 49 1 0.0783 -1.3741 -1.6548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:38 Heat of formation + Delta-G solvation = 12.689105 kcal Electronic energy + Delta-G solvation = -30302.380877 eV Core-core repulsion = 26371.994747 eV Total energy + Delta-G solvation = -3930.386131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.95887 -41.31838 -39.60495 -38.46754 -36.28023 -33.87394 -33.23902 -31.89438 -31.64686 -29.74267 -29.58096 -28.54207 -26.24415 -24.43815 -24.19272 -24.06891 -22.15866 -21.78104 -21.54583 -20.80281 -18.74929 -18.61034 -17.80212 -17.21306 -16.93372 -16.66853 -16.57027 -16.39159 -16.01909 -15.77425 -15.37033 -15.24966 -15.00339 -14.82326 -14.73749 -14.46960 -13.94893 -13.91226 -13.63708 -13.27888 -13.21328 -13.04400 -12.96314 -12.72784 -12.64093 -12.51349 -12.38026 -12.18356 -12.11651 -12.05593 -11.99526 -11.84943 -11.60978 -11.44139 -11.37030 -10.60353 -9.76617 -9.61400 -9.37238 -9.20865 -8.66887 -7.87934 -5.34746 0.12057 0.19504 1.44895 1.46762 1.55680 2.46861 2.50075 2.83679 3.13813 3.28000 3.44066 3.67029 3.73507 3.76650 3.90643 3.97054 4.00578 4.13562 4.27861 4.32751 4.35751 4.38711 4.42506 4.47012 4.55682 4.64046 4.65513 4.66881 4.78511 4.85038 4.87051 4.95583 5.01515 5.02870 5.03740 5.12215 5.16120 5.20021 5.23232 5.31453 5.35049 5.36542 5.45245 5.60099 5.63421 5.80532 5.92474 6.19751 6.25581 6.37279 6.45222 7.12164 7.82333 8.38382 9.18972 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003825 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.537037 B = 7319.263312 C = 8359.738912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.613 5.613 10 C 0.149 3.851 11 C 0.059 3.941 12 N -0.515 5.515 13 C 0.114 3.886 14 C -0.107 4.107 15 C 0.083 3.917 16 F -0.152 7.152 17 C -0.163 4.163 18 C -0.075 4.075 19 C -0.164 4.164 20 C 0.127 3.873 21 N -0.487 5.487 22 C 0.043 3.957 23 C -0.118 4.118 24 C -0.121 4.121 25 C 0.038 3.962 26 C 0.061 3.939 27 C 0.196 3.804 28 H 0.250 0.750 29 H 0.017 0.983 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.017 0.983 33 H 0.099 0.901 34 H 0.021 0.979 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.007 0.993 47 H 0.059 0.941 48 H -0.004 1.004 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -21.976 -6.887 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.337 5.337 10 C 0.024 3.976 11 C -0.070 4.070 12 N -0.239 5.239 13 C -0.013 4.013 14 C -0.109 4.109 15 C 0.062 3.938 16 F -0.130 7.130 17 C -0.181 4.181 18 C -0.093 4.093 19 C -0.184 4.184 20 C 0.032 3.968 21 N -0.209 5.209 22 C -0.083 4.083 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.087 4.087 26 C -0.069 4.069 27 C 0.070 3.930 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.035 0.965 33 H 0.118 0.882 34 H 0.039 0.961 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.026 0.974 47 H 0.077 0.923 48 H 0.014 0.986 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.271 -21.757 -6.382 23.811 hybrid contribution 0.478 1.606 -0.944 1.923 sum -6.793 -20.151 -7.326 22.492 Atomic orbital electron populations 1.70191 1.06721 1.25817 1.55472 1.25845 0.96104 1.01538 1.01045 0.85236 0.78157 0.79379 0.77488 1.21391 1.21858 1.19119 1.19552 0.92421 0.85782 1.41824 0.91464 1.44354 1.33876 1.02780 1.52648 1.21079 0.97449 0.85342 0.93737 1.22449 0.89152 0.99965 0.95464 1.61902 1.34129 1.03502 1.24363 1.20683 0.91813 0.96130 0.92692 1.19721 0.98026 0.99381 0.93811 1.17861 0.88360 0.94654 0.92888 1.91461 1.66513 1.73745 1.81319 1.21402 0.91551 1.02465 1.02726 1.21205 0.99821 0.94320 0.93976 1.21936 0.96867 1.02259 0.97294 1.18624 0.91813 0.95300 0.91111 1.62226 1.47505 1.07514 1.03622 1.23277 0.93187 0.99679 0.92172 1.22448 1.02471 0.93657 0.97003 1.22376 1.02147 0.97395 0.93941 1.23036 1.01859 0.85405 0.98445 1.22451 0.98053 0.90270 0.96117 1.20469 0.87904 0.95472 0.89174 0.94094 0.96506 0.92055 0.88691 0.96463 0.88239 0.96124 0.83069 0.81652 0.83448 0.92331 0.92379 0.89398 0.91632 0.89731 0.90132 0.92617 0.90423 0.97437 0.92296 0.98619 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.74 11.16 21.65 0.24 -57.50 16 2 C -0.05 -2.91 4.96 84.86 0.42 -2.49 16 3 Si 0.97 46.54 29.58 68.60 2.03 48.56 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.27 -15.41 9.63 84.03 0.81 -14.60 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -33.23 3.03 -698.11 -2.12 -35.34 16 10 C 0.15 6.70 6.69 86.35 0.58 7.28 16 11 C 0.06 2.21 5.62 86.38 0.49 2.70 16 12 N -0.51 -19.73 4.62 -899.84 -4.16 -23.89 16 13 C 0.11 3.69 4.65 85.56 0.40 4.08 16 14 C -0.11 -3.19 4.67 -19.69 -0.09 -3.28 16 15 C 0.08 2.42 6.03 22.36 0.13 2.55 16 16 F -0.15 -5.03 15.90 44.97 0.72 -4.32 16 17 C -0.16 -3.66 10.02 22.34 0.22 -3.44 16 18 C -0.07 -1.34 10.04 22.24 0.22 -1.12 16 19 C -0.16 -3.24 7.98 22.41 0.18 -3.06 16 20 C 0.13 3.20 4.81 38.21 0.18 3.38 16 21 N -0.49 -11.47 4.37 -682.82 -2.99 -14.46 16 22 C 0.04 0.97 6.39 86.65 0.55 1.52 16 23 C -0.12 -2.01 7.06 31.80 0.22 -1.78 16 24 C -0.12 -1.61 6.93 31.47 0.22 -1.40 16 25 C 0.04 0.66 6.54 86.45 0.57 1.22 16 26 C 0.06 2.70 5.19 86.38 0.45 3.15 16 27 C 0.20 10.49 5.40 86.35 0.47 10.96 16 28 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.06 2.61 7.96 -2.38 -0.02 2.59 16 31 H 0.09 2.98 7.99 -2.39 -0.02 2.96 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 2.93 7.55 -2.39 -0.02 2.92 16 34 H 0.02 0.70 7.41 -2.39 -0.02 0.69 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.15 2.20 7.00 -2.91 -0.02 2.18 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.14 6.37 -2.39 -0.02 1.13 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.85 6.99 -2.39 -0.02 0.83 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.06 2.54 5.96 -2.39 -0.01 2.53 16 48 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 49 H 0.05 3.06 6.17 -2.39 -0.01 3.04 16 Total: -1.00 -69.63 379.70 0.67 -68.95 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.93 Total: 12.32 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.02 Total: 5.67 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -9.02 Total: -131.19 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.72 Total: -4.32 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -69.63 0.67 -68.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.642 kcal (2) G-P(sol) polarization free energy of solvation -69.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds