Wall clock time and date at job start Tue Mar 31 2020 18:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48501 * 109.46834 * 239.99673 * 3 2 1 5 5 H 1.48493 * 109.47394 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46845 * 120.00079 * 3 2 1 7 7 C 1.38946 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00438 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99477 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00029 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46846 * 179.97438 * 12 10 9 14 14 C 1.46854 * 111.00266 * 294.21094 * 13 12 10 15 15 C 1.53039 * 109.52422 * 174.15991 * 14 13 12 16 16 C 1.53117 * 109.27554 * 59.18054 * 15 14 13 17 17 C 1.53123 * 109.16210 * 302.34060 * 16 15 14 18 18 C 1.46848 * 111.00295 * 169.99941 * 13 12 10 19 19 H 1.08997 * 109.45022 * 65.82664 * 18 13 12 20 20 C 1.50700 * 109.46013 * 305.85805 * 18 13 12 21 21 N 1.30841 * 126.46526 * 314.91905 * 20 18 13 22 22 N 1.28903 * 109.73795 * 179.97438 * 21 20 18 23 23 C 1.29834 * 109.48273 * 359.97438 * 22 21 20 24 24 N 1.34690 * 126.46316 * 134.94503 * 20 18 13 25 25 C 1.46259 * 128.84864 * 0.07824 * 24 20 18 26 26 C 1.53320 * 108.85394 * 162.84075 * 25 24 20 27 27 C 1.53480 * 109.40623 * 50.24320 * 26 25 24 28 28 C 1.50809 * 128.52450 * 180.11764 * 23 22 21 29 29 H 0.97004 * 120.00028 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00027 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47291 * 60.00085 * 12 10 9 32 32 H 1.09000 * 109.47399 * 299.99497 * 12 10 9 33 33 H 1.09003 * 109.46190 * 54.14336 * 14 13 12 34 34 H 1.09000 * 109.45226 * 294.17503 * 14 13 12 35 35 H 1.09005 * 109.50045 * 299.23767 * 15 14 13 36 36 H 1.08993 * 109.53393 * 179.14040 * 15 14 13 37 37 H 1.09001 * 109.51973 * 182.43941 * 16 15 14 38 38 H 1.08996 * 109.57563 * 62.28489 * 16 15 14 39 39 H 1.08991 * 109.50291 * 297.71854 * 17 16 15 40 40 H 1.08998 * 109.53318 * 177.61481 * 17 16 15 41 41 H 1.09002 * 109.59600 * 282.69155 * 25 24 20 42 42 H 1.09003 * 109.59202 * 42.99357 * 25 24 20 43 43 H 1.09006 * 109.44699 * 170.40105 * 26 25 24 44 44 H 1.09005 * 109.45193 * 290.32747 * 26 25 24 45 45 H 1.08995 * 109.44698 * 170.67438 * 27 26 25 46 46 H 1.08998 * 109.51568 * 50.62699 * 27 26 25 47 47 H 1.08997 * 109.73161 * 283.70860 * 28 23 22 48 48 H 1.08998 * 109.72879 * 44.35116 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2436 -4.8629 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 2.9666 -6.0142 -1.2506 15 6 4.0466 -7.0945 -1.1577 16 6 3.3836 -8.4516 -0.9063 17 6 2.5508 -8.3743 0.3764 18 6 1.5142 -7.2568 0.2390 19 1 0.8525 -7.4763 -0.5989 20 6 0.7051 -7.1639 1.5069 21 7 1.0999 -6.6550 2.6458 22 7 0.1504 -6.7409 3.5134 23 6 -0.8846 -7.3043 2.9684 24 7 -0.5608 -7.5895 1.6816 25 6 -1.4532 -8.2340 0.7186 26 6 -2.6015 -8.9064 1.4802 27 6 -3.2203 -7.9012 2.4612 28 6 -2.2233 -7.6120 3.5910 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6166 -4.9208 -0.8886 32 1 0.6173 -4.9205 0.8914 33 1 3.4362 -5.0444 -1.4154 34 1 2.2978 -6.2396 -2.0813 35 1 4.7237 -6.8624 -0.3357 36 1 4.6071 -7.1308 -2.0917 37 1 4.1515 -9.2173 -0.7962 38 1 2.7363 -8.7031 -1.7464 39 1 3.2044 -8.1623 1.2224 40 1 2.0421 -9.3245 0.5385 41 1 -1.8560 -7.4859 0.0359 42 1 -0.9004 -8.9846 0.1536 43 1 -3.3595 -9.2415 0.7721 44 1 -2.2175 -9.7637 2.0332 45 1 -4.1349 -8.3199 2.8810 46 1 -3.4521 -6.9749 1.9355 47 1 -2.1366 -8.4857 4.2368 48 1 -2.5635 -6.7560 4.1737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108858339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:36 Heat of formation + Delta-G solvation = 42.723664 kcal Electronic energy + Delta-G solvation = -30011.244730 eV Core-core repulsion = 26102.080957 eV Total energy + Delta-G solvation = -3909.163773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.29012 -39.28549 -37.57168 -37.39919 -34.00761 -33.94332 -33.11658 -31.58064 -31.13629 -30.66500 -28.52910 -27.43332 -24.84532 -24.62604 -23.74021 -22.89343 -22.84251 -20.99759 -19.72449 -19.45047 -19.09997 -17.78901 -17.13120 -16.58183 -16.08070 -15.57015 -15.12751 -14.80763 -14.62793 -14.59943 -14.51416 -14.40857 -14.14364 -13.87583 -13.70760 -13.51617 -13.18632 -12.80895 -12.59803 -12.46061 -11.93207 -11.71678 -11.62876 -11.52361 -11.43958 -11.42633 -11.18611 -11.12687 -10.97072 -10.65915 -10.52507 -10.39445 -10.29441 -10.14635 -10.12641 -10.07921 -9.38216 -8.87564 -8.37527 -7.90924 -7.80334 -6.34451 -3.74698 1.83064 2.37419 3.02493 3.25634 3.30353 3.35321 3.87675 3.95019 3.99655 4.13668 4.15728 4.26899 4.29068 4.37364 4.75363 4.80713 4.83871 4.89096 4.96014 5.02795 5.12150 5.19417 5.23379 5.27105 5.31608 5.36893 5.42263 5.44231 5.59400 5.65767 5.71371 5.74207 5.81357 5.83253 5.92554 5.97595 6.03522 6.07244 6.20588 6.28823 6.34573 6.50242 6.57749 6.86601 7.29385 7.40369 7.62064 8.13474 8.69504 8.93159 9.25465 9.61871 10.14152 10.83615 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.003858 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.084195 B = 7255.311955 C = 9102.095658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.451 3.549 11 O -0.572 6.572 12 C 0.049 3.951 13 N -0.493 5.493 14 C 0.054 3.946 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.104 4.104 18 C 0.179 3.821 19 H 0.048 0.952 20 C 0.184 3.816 21 N -0.259 5.259 22 N -0.291 5.291 23 C 0.168 3.832 24 N -0.472 5.472 25 C 0.101 3.899 26 C -0.133 4.133 27 C -0.127 4.127 28 C -0.031 4.031 29 H 0.271 0.729 30 H 0.390 0.610 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.021 0.979 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 -22.307 -1.502 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.236 3.764 11 O -0.456 6.456 12 C -0.082 4.082 13 N -0.218 5.218 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.155 4.155 17 C -0.143 4.143 18 C 0.068 3.932 19 H 0.066 0.934 20 C -0.083 4.083 21 N -0.098 5.098 22 N -0.131 5.131 23 C -0.099 4.099 24 N -0.164 5.164 25 C -0.022 4.022 26 C -0.170 4.170 27 C -0.165 4.165 28 C -0.071 4.071 29 H 0.081 0.919 30 H 0.223 0.777 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.039 0.961 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.653 -21.394 -0.102 22.405 hybrid contribution -1.802 0.177 -1.606 2.420 sum -8.455 -21.217 -1.707 22.904 Atomic orbital electron populations 1.69611 1.05954 1.28107 1.50946 1.25241 0.95611 0.99649 0.97450 0.85924 0.78752 0.80508 0.79070 1.19959 1.21044 1.19845 1.19653 0.93334 0.82178 1.47371 0.87919 1.41829 1.09055 1.04573 1.64722 1.19565 0.88353 0.84306 0.84186 1.90478 1.13508 1.86766 1.54828 1.21831 0.93991 0.91618 1.00748 1.61370 1.24533 0.99455 1.36446 1.22325 0.95004 1.02280 0.87654 1.21581 0.98136 0.93339 1.02259 1.21593 0.99050 0.98207 0.96693 1.21583 0.97290 0.95450 0.99938 1.19846 0.92599 0.92684 0.88116 0.93439 1.24420 0.83579 1.00998 0.99341 1.74687 1.20956 1.17128 0.97028 1.74184 0.97478 1.16779 1.24615 1.24668 0.99690 1.02515 0.83063 1.45977 1.12340 1.46236 1.11893 1.22013 0.91231 0.97851 0.91152 1.21968 0.96930 0.98852 0.99290 1.21766 0.98514 0.99948 0.96314 1.20181 0.86012 1.03658 0.97236 0.91946 0.77716 0.94147 0.89859 0.87234 0.96081 0.90435 0.91605 0.91534 0.92495 0.89674 0.92075 0.89299 0.88892 0.88984 0.90530 0.89695 0.90797 0.89000 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 13.05 55.50 0.72 -24.73 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.30 -8.57 9.68 -14.94 -0.14 -8.72 16 8 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 9 N -0.57 -15.17 5.29 -10.96 -0.06 -15.23 16 10 C 0.45 11.35 7.46 -10.98 -0.08 11.27 16 11 O -0.57 -16.01 13.90 5.55 0.08 -15.93 16 12 C 0.05 0.99 5.24 -4.98 -0.03 0.96 16 13 N -0.49 -8.85 4.22 -229.51 -0.97 -9.82 16 14 C 0.05 0.89 5.11 -3.83 -0.02 0.87 16 15 C -0.12 -1.53 6.09 -26.65 -0.16 -1.70 16 16 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 17 C -0.10 -1.28 5.36 -26.65 -0.14 -1.42 16 18 C 0.18 2.55 2.26 -68.88 -0.16 2.40 16 19 H 0.05 0.58 7.74 -51.93 -0.40 0.18 16 20 C 0.18 2.89 5.09 -155.45 -0.79 2.10 16 21 N -0.26 -5.07 11.90 32.70 0.39 -4.68 16 22 N -0.29 -5.33 12.21 32.76 0.40 -4.93 16 23 C 0.17 2.30 7.75 -155.30 -1.20 1.09 16 24 N -0.47 -5.90 3.11 -110.86 -0.35 -6.24 16 25 C 0.10 0.76 6.51 -4.01 -0.03 0.74 16 26 C -0.13 -0.69 5.97 -26.32 -0.16 -0.84 16 27 C -0.13 -0.76 5.96 -26.26 -0.16 -0.92 16 28 C -0.03 -0.27 6.34 -27.60 -0.17 -0.45 16 29 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 30 H 0.39 10.14 7.90 -40.82 -0.32 9.81 16 31 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.08 1.75 6.31 -51.93 -0.33 1.42 16 33 H 0.11 2.20 5.78 -51.93 -0.30 1.90 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -36.08 378.27 -10.23 -46.31 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.62 Total: 8.32 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -3.50 Total: 4.49 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 0.14 Total: -65.63 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.08 Total: -15.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.08 -10.23 -46.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108858339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.031 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds