Wall clock time and date at job start Tue Mar 31 2020 18:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48501 * 109.46834 * 239.99673 * 3 2 1 5 5 H 1.48493 * 109.47394 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46845 * 120.00079 * 3 2 1 7 7 C 1.38946 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00438 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99477 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00029 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46846 * 179.97438 * 12 10 9 14 14 C 1.46854 * 111.00266 * 294.21094 * 13 12 10 15 15 C 1.53039 * 109.52422 * 174.15991 * 14 13 12 16 16 C 1.53117 * 109.27554 * 59.18054 * 15 14 13 17 17 C 1.53123 * 109.16210 * 302.34060 * 16 15 14 18 18 C 1.46848 * 111.00295 * 169.99941 * 13 12 10 19 19 H 1.08997 * 109.45022 * 65.82664 * 18 13 12 20 20 C 1.50700 * 109.46013 * 305.85805 * 18 13 12 21 21 N 1.30841 * 126.46526 * 314.91905 * 20 18 13 22 22 N 1.28903 * 109.73795 * 179.97438 * 21 20 18 23 23 C 1.29834 * 109.48273 * 359.97438 * 22 21 20 24 24 N 1.34690 * 126.46316 * 134.94503 * 20 18 13 25 25 C 1.46259 * 128.84864 * 0.07824 * 24 20 18 26 26 C 1.53320 * 108.85394 * 162.84075 * 25 24 20 27 27 C 1.53480 * 109.40623 * 50.24320 * 26 25 24 28 28 C 1.50809 * 128.52450 * 180.11764 * 23 22 21 29 29 H 0.97004 * 120.00028 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00027 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47291 * 60.00085 * 12 10 9 32 32 H 1.09000 * 109.47399 * 299.99497 * 12 10 9 33 33 H 1.09003 * 109.46190 * 54.14336 * 14 13 12 34 34 H 1.09000 * 109.45226 * 294.17503 * 14 13 12 35 35 H 1.09005 * 109.50045 * 299.23767 * 15 14 13 36 36 H 1.08993 * 109.53393 * 179.14040 * 15 14 13 37 37 H 1.09001 * 109.51973 * 182.43941 * 16 15 14 38 38 H 1.08996 * 109.57563 * 62.28489 * 16 15 14 39 39 H 1.08991 * 109.50291 * 297.71854 * 17 16 15 40 40 H 1.08998 * 109.53318 * 177.61481 * 17 16 15 41 41 H 1.09002 * 109.59600 * 282.69155 * 25 24 20 42 42 H 1.09003 * 109.59202 * 42.99357 * 25 24 20 43 43 H 1.09006 * 109.44699 * 170.40105 * 26 25 24 44 44 H 1.09005 * 109.45193 * 290.32747 * 26 25 24 45 45 H 1.08995 * 109.44698 * 170.67438 * 27 26 25 46 46 H 1.08998 * 109.51568 * 50.62699 * 27 26 25 47 47 H 1.08997 * 109.73161 * 283.70860 * 28 23 22 48 48 H 1.08998 * 109.72879 * 44.35116 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2436 -4.8629 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 2.9666 -6.0142 -1.2506 15 6 4.0466 -7.0945 -1.1577 16 6 3.3836 -8.4516 -0.9063 17 6 2.5508 -8.3743 0.3764 18 6 1.5142 -7.2568 0.2390 19 1 0.8525 -7.4763 -0.5989 20 6 0.7051 -7.1639 1.5069 21 7 1.0999 -6.6550 2.6458 22 7 0.1504 -6.7409 3.5134 23 6 -0.8846 -7.3043 2.9684 24 7 -0.5608 -7.5895 1.6816 25 6 -1.4532 -8.2340 0.7186 26 6 -2.6015 -8.9064 1.4802 27 6 -3.2203 -7.9012 2.4612 28 6 -2.2233 -7.6120 3.5910 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6166 -4.9208 -0.8886 32 1 0.6173 -4.9205 0.8914 33 1 3.4362 -5.0444 -1.4154 34 1 2.2978 -6.2396 -2.0813 35 1 4.7237 -6.8624 -0.3357 36 1 4.6071 -7.1308 -2.0917 37 1 4.1515 -9.2173 -0.7962 38 1 2.7363 -8.7031 -1.7464 39 1 3.2044 -8.1623 1.2224 40 1 2.0421 -9.3245 0.5385 41 1 -1.8560 -7.4859 0.0359 42 1 -0.9004 -8.9846 0.1536 43 1 -3.3595 -9.2415 0.7721 44 1 -2.2175 -9.7637 2.0332 45 1 -4.1349 -8.3199 2.8810 46 1 -3.4521 -6.9749 1.9355 47 1 -2.1366 -8.4857 4.2368 48 1 -2.5635 -6.7560 4.1737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108858339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:35 Heat of formation + Delta-G solvation = 17.071177 kcal Electronic energy + Delta-G solvation = -30012.357105 eV Core-core repulsion = 26102.080957 eV Total energy + Delta-G solvation = -3910.276148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.35910 -40.78701 -39.29403 -38.11971 -36.03164 -34.90816 -34.44169 -33.28121 -32.60333 -31.47854 -29.55840 -29.01059 -26.59072 -25.44363 -24.90040 -24.21422 -23.67322 -22.04091 -21.11436 -20.56954 -20.37982 -19.91463 -18.15094 -17.77933 -17.46188 -16.93780 -16.64355 -16.33162 -15.89271 -15.71238 -15.54615 -15.35699 -15.19609 -15.08083 -14.88568 -14.67329 -14.46386 -14.09880 -13.97582 -13.55266 -13.32706 -13.17948 -13.12124 -12.80098 -12.59673 -12.46828 -12.29279 -12.13785 -12.10359 -12.05974 -11.83609 -11.64398 -11.61264 -11.58102 -11.34298 -11.24009 -10.99695 -10.30343 -10.06070 -10.01086 -9.24789 -8.49121 -5.98314 0.79849 1.37143 1.38540 1.48075 1.50349 1.84949 1.99573 2.25477 2.62553 3.06981 3.16585 3.26524 3.40087 3.55541 3.73269 3.76870 3.81219 3.87227 4.00309 4.05349 4.21295 4.25318 4.27224 4.32751 4.34558 4.39803 4.41251 4.50616 4.61141 4.77434 4.81997 4.83303 4.90570 4.94019 4.95209 5.02153 5.06129 5.08420 5.20766 5.22709 5.27388 5.33062 5.37431 5.48478 5.83684 5.95226 6.04169 6.17958 6.56100 7.09018 7.50124 7.78974 8.06329 8.68617 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.003858 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.084195 B = 7255.311955 C = 9102.095658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.445 3.555 11 O -0.606 6.606 12 C 0.071 3.929 13 N -0.519 5.519 14 C 0.055 3.945 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.099 4.099 18 C 0.181 3.819 19 H 0.082 0.918 20 C 0.181 3.819 21 N -0.322 5.322 22 N -0.351 5.351 23 C 0.177 3.823 24 N -0.465 5.465 25 C 0.085 3.915 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.034 4.034 29 H 0.278 0.722 30 H 0.392 0.608 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 -24.753 -3.242 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.232 3.768 11 O -0.491 6.491 12 C -0.061 4.061 13 N -0.245 5.245 14 C -0.071 4.071 15 C -0.150 4.150 16 C -0.144 4.144 17 C -0.138 4.138 18 C 0.071 3.929 19 H 0.099 0.901 20 C -0.088 4.088 21 N -0.161 5.161 22 N -0.190 5.190 23 C -0.092 4.092 24 N -0.156 5.156 25 C -0.036 4.036 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.073 4.073 29 H 0.087 0.913 30 H 0.225 0.775 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.142 0.858 44 H 0.099 0.901 45 H 0.132 0.868 46 H 0.082 0.918 47 H 0.129 0.871 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.897 -23.872 -1.856 25.543 hybrid contribution -1.157 0.894 -1.039 1.793 sum -10.054 -22.978 -2.894 25.247 Atomic orbital electron populations 1.69678 1.06938 1.29375 1.50382 1.26077 0.96575 1.02469 0.96133 0.84965 0.77777 0.76426 0.79010 1.19245 1.19194 1.20011 1.19647 0.92714 0.83883 1.50059 0.90239 1.41909 1.09046 1.04808 1.65420 1.20534 0.88327 0.85645 0.82310 1.90452 1.15294 1.87593 1.55792 1.21510 0.93665 0.89704 1.01210 1.61250 1.25029 1.00531 1.37728 1.22247 0.95925 1.01106 0.87857 1.21561 0.97041 0.94108 1.02254 1.21562 0.99594 0.96664 0.96592 1.21588 0.96690 0.95817 0.99708 1.20045 0.93413 0.91098 0.88390 0.90095 1.24601 0.84913 1.00518 0.98809 1.74529 1.22977 1.19688 0.98944 1.74037 0.99076 1.19764 1.26098 1.25513 1.00110 1.00027 0.83539 1.46220 1.11683 1.45515 1.12222 1.22561 0.91600 0.98547 0.90869 1.22014 0.96561 0.98206 0.99500 1.21791 0.98695 1.00082 0.95489 1.20491 0.84098 1.04263 0.98482 0.91269 0.77507 0.91589 0.90996 0.91848 0.93578 0.93328 0.89497 0.89424 0.89683 0.92939 0.89140 0.88574 0.86558 0.85803 0.90053 0.86805 0.91819 0.87117 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 13.05 21.66 0.28 -51.98 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 1.00 44.99 29.55 68.60 2.03 47.02 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.33 -20.15 9.68 84.04 0.81 -19.34 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.57 -32.26 5.29 -306.98 -1.62 -33.88 16 10 C 0.44 23.55 7.46 87.66 0.65 24.20 16 11 O -0.61 -36.03 13.90 -3.06 -0.04 -36.07 16 12 C 0.07 2.89 5.24 85.56 0.45 3.34 16 13 N -0.52 -18.88 4.22 -880.04 -3.72 -22.60 16 14 C 0.06 1.82 5.11 86.32 0.44 2.26 16 15 C -0.11 -2.88 6.09 30.65 0.19 -2.69 16 16 C -0.11 -1.95 6.00 30.67 0.18 -1.77 16 17 C -0.10 -2.25 5.36 30.65 0.16 -2.09 16 18 C 0.18 4.91 2.26 44.19 0.10 5.01 16 19 H 0.08 1.67 7.74 -2.39 -0.02 1.65 16 20 C 0.18 5.66 5.09 138.14 0.70 6.37 16 21 N -0.32 -13.28 11.90 -50.46 -0.60 -13.88 16 22 N -0.35 -13.48 12.21 -50.27 -0.61 -14.10 16 23 C 0.18 4.82 7.75 138.14 1.07 5.89 16 24 N -0.46 -10.97 3.11 -504.64 -1.57 -12.54 16 25 C 0.08 0.99 6.51 86.53 0.56 1.55 16 26 C -0.13 -0.76 5.97 30.86 0.18 -0.57 16 27 C -0.12 -1.06 5.96 30.90 0.18 -0.88 16 28 C -0.03 -0.54 6.34 30.03 0.19 -0.35 16 29 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.39 21.18 7.90 -92.70 -0.73 20.44 16 31 H 0.07 2.32 8.12 -2.39 -0.02 2.31 16 32 H 0.07 3.13 6.31 -2.39 -0.02 3.12 16 33 H 0.06 2.67 5.78 -2.39 -0.01 2.66 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 44 H 0.08 0.48 8.12 -2.38 -0.02 0.46 16 45 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -86.05 378.27 0.74 -85.32 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.24 Total: 32.05 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.35 Total: 20.66 kcal Atomic # 7 Polarization: -141.14 SS G_CDS: -7.84 Total: -148.98 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.04 Total: -36.07 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -86.05 0.74 -85.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108858339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.388 kcal (2) G-P(sol) polarization free energy of solvation -86.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds