Wall clock time and date at job start Tue Mar 31 2020 18:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47110 * 270.00100 * 3 2 1 5 5 H 1.48500 * 109.46854 * 30.00113 * 3 2 1 6 6 H 1.48501 * 109.47425 * 149.99528 * 3 2 1 7 7 C 1.38955 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99742 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99972 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00158 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00040 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47091 * 179.97438 * 12 10 9 14 14 C 1.46856 * 110.99619 * 293.95260 * 13 12 10 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 12 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 18 18 C 1.46846 * 111.00121 * 58.16143 * 13 12 10 19 19 H 1.09004 * 109.45906 * 294.16468 * 18 13 12 20 20 C 1.50696 * 109.46446 * 54.14284 * 18 13 12 21 21 N 1.30838 * 126.46219 * 44.68583 * 20 18 13 22 22 N 1.28910 * 109.74141 * 179.82983 * 21 20 18 23 23 C 1.29834 * 109.47722 * 0.39186 * 22 21 20 24 24 N 1.34695 * 126.46963 * 225.00203 * 20 18 13 25 25 C 1.46252 * 128.84165 * 0.09886 * 24 20 18 26 26 C 1.53325 * 108.72927 * 162.93483 * 25 24 20 27 27 C 1.53143 * 109.58430 * 50.26908 * 26 25 24 28 28 C 1.50799 * 128.52247 * 179.89062 * 23 22 21 29 29 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00270 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47108 * 59.99639 * 12 10 9 32 32 H 1.09002 * 109.47016 * 299.99547 * 12 10 9 33 33 H 1.09000 * 109.46462 * 65.82793 * 14 13 12 34 34 H 1.09001 * 109.45242 * 305.84772 * 14 13 12 35 35 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 36 36 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 37 37 H 1.08994 * 109.52349 * 177.58253 * 16 15 14 38 38 H 1.08997 * 109.52263 * 297.77214 * 16 15 14 39 39 H 1.08997 * 109.49417 * 182.41991 * 17 16 15 40 40 H 1.09007 * 109.52297 * 62.34418 * 17 16 15 41 41 H 1.08996 * 109.59975 * 282.71075 * 25 24 20 42 42 H 1.09004 * 109.59584 * 43.16630 * 25 24 20 43 43 H 1.08999 * 109.45212 * 290.23015 * 26 25 24 44 44 H 1.09005 * 109.43018 * 170.29235 * 26 25 24 45 45 H 1.09001 * 109.49189 * 170.61825 * 27 26 25 46 46 H 1.08997 * 109.52662 * 50.52699 * 27 26 25 47 47 H 1.08999 * 109.72853 * 283.69337 * 28 23 22 48 48 H 1.08997 * 109.73233 * 44.32792 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1986 -5.9795 0.0017 14 6 2.9646 -6.0177 -1.2506 15 6 3.8410 -7.2720 -1.2759 16 6 4.7917 -7.2498 -0.0758 17 6 3.9695 -7.1605 1.2139 18 6 3.0894 -5.9095 1.1671 19 1 3.7206 -5.0242 1.0890 20 6 2.2644 -5.8285 2.4256 21 7 1.2105 -6.5488 2.7121 22 7 0.7582 -6.2164 3.8726 23 6 1.4948 -5.2696 4.3693 24 7 2.4694 -4.9968 3.4651 25 6 3.5114 -3.9854 3.6390 26 6 3.0851 -3.0266 4.7570 27 6 2.6654 -3.8309 5.9908 28 6 1.3506 -4.5647 5.6946 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6183 -4.9209 -0.8897 32 1 0.6163 -4.9205 0.8903 33 1 3.5963 -5.1319 -1.3172 34 1 2.2770 -6.0379 -2.0962 35 1 3.2091 -8.1586 -1.2233 36 1 4.4205 -7.2924 -2.1989 37 1 5.3878 -8.1622 -0.0664 38 1 5.4500 -6.3842 -0.1486 39 1 4.6414 -7.1009 2.0701 40 1 3.3397 -8.0453 1.3065 41 1 4.4493 -4.4697 3.9106 42 1 3.6400 -3.4296 2.7102 43 1 2.2456 -2.4211 4.4155 44 1 3.9208 -2.3759 5.0148 45 1 2.5231 -3.1554 6.8342 46 1 3.4410 -4.5575 6.2331 47 1 0.5321 -3.8468 5.6423 48 1 1.1505 -5.2941 6.4795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108858341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:39 Heat of formation + Delta-G solvation = 38.153905 kcal Electronic energy + Delta-G solvation = -31114.782773 eV Core-core repulsion = 27205.420840 eV Total energy + Delta-G solvation = -3909.361932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.01057 -39.54002 -37.39893 -37.06336 -34.18487 -33.66799 -32.96640 -31.43241 -31.34853 -30.35700 -28.28762 -27.33315 -24.81395 -24.43364 -23.56032 -22.71754 -22.52035 -20.79905 -19.68213 -19.34574 -19.07218 -17.93669 -16.75555 -16.37139 -15.97924 -15.50801 -14.87906 -14.78379 -14.68257 -14.38448 -14.26520 -14.13534 -14.08550 -13.93265 -13.63714 -13.48752 -12.89318 -12.71701 -12.37964 -12.18472 -11.88705 -11.63614 -11.42864 -11.35388 -11.28122 -11.20104 -11.17540 -10.87846 -10.72146 -10.55978 -10.48990 -10.39295 -10.36288 -10.21045 -9.94835 -9.76382 -9.57667 -9.26423 -8.60734 -8.11093 -7.43860 -6.55142 -3.97648 2.13341 2.74965 3.04614 3.15321 3.18786 3.21846 3.71613 4.03880 4.23326 4.28271 4.51621 4.53691 4.65931 4.70671 4.90736 5.07442 5.11521 5.13215 5.19406 5.22473 5.29938 5.39946 5.48384 5.56153 5.61706 5.68996 5.71197 5.77358 5.81840 5.88066 5.91330 6.01365 6.05434 6.06096 6.08390 6.15042 6.20878 6.26274 6.33091 6.36695 6.46924 6.56901 6.70045 7.16370 7.35024 7.39712 7.46027 7.89534 8.44228 9.01190 9.14063 9.38443 9.87803 10.60887 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.005647 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.634312 B = 4957.260689 C = 6900.294408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.928 3.072 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.102 0.898 9 N -0.552 5.552 10 C 0.406 3.594 11 O -0.600 6.600 12 C 0.040 3.960 13 N -0.493 5.493 14 C 0.044 3.956 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.103 4.103 18 C 0.154 3.846 19 H 0.107 0.893 20 C 0.197 3.803 21 N -0.282 5.282 22 N -0.299 5.299 23 C 0.164 3.836 24 N -0.460 5.460 25 C 0.100 3.900 26 C -0.135 4.135 27 C -0.124 4.124 28 C -0.031 4.031 29 H 0.274 0.726 30 H 0.393 0.607 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -8.011 7.420 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.120 0.880 9 N -0.186 5.186 10 C 0.192 3.808 11 O -0.489 6.489 12 C -0.092 4.092 13 N -0.217 5.217 14 C -0.083 4.083 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.142 4.142 18 C 0.043 3.957 19 H 0.124 0.876 20 C -0.071 4.071 21 N -0.122 5.122 22 N -0.140 5.140 23 C -0.103 4.103 24 N -0.150 5.150 25 C -0.023 4.023 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.071 4.071 29 H 0.084 0.916 30 H 0.226 0.774 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.280 -9.298 7.304 13.388 hybrid contribution 1.082 2.737 -0.020 2.943 sum 7.362 -6.561 7.284 12.260 Atomic orbital electron populations 1.69611 1.05995 1.28425 1.49334 1.25302 0.95585 0.99819 0.96955 0.85894 0.79165 0.80875 0.78567 1.20261 1.20803 1.19461 1.19673 0.93267 0.82315 1.48219 0.87973 1.42070 1.09380 1.04927 1.62220 1.21114 0.88751 0.85974 0.84948 1.90335 1.13827 1.86944 1.57749 1.22076 0.95593 0.87821 1.03726 1.62274 1.17255 1.40626 1.01521 1.22252 0.96718 0.98461 0.90917 1.21567 0.97424 0.98623 0.97533 1.21547 0.97684 1.01567 0.94579 1.21567 0.97338 0.97760 0.97493 1.20301 0.91487 1.00626 0.83254 0.87590 1.24484 0.98120 0.91934 0.92513 1.74514 1.08163 1.22419 1.07111 1.74045 1.23392 1.12150 1.04381 1.24553 0.90152 0.99550 0.96076 1.45895 1.24604 1.29299 1.15247 1.22080 0.88903 0.88936 1.02342 1.21914 1.03530 0.97757 0.94080 1.21693 0.96871 0.99420 0.98201 1.20162 0.98989 0.98526 0.89383 0.91632 0.77374 0.89158 0.89473 0.91342 0.91244 0.91435 0.91829 0.91983 0.91887 0.92386 0.90692 0.89837 0.87401 0.90042 0.89121 0.89913 0.91319 0.88948 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 13.05 55.50 0.72 -22.92 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 8 H 0.10 2.78 7.16 -52.49 -0.38 2.41 16 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.41 9.07 7.19 -10.98 -0.08 8.99 16 11 O -0.60 -14.13 11.20 5.55 0.06 -14.07 16 12 C 0.04 0.77 5.45 -4.97 -0.03 0.74 16 13 N -0.49 -8.74 4.68 -229.51 -1.08 -9.81 16 14 C 0.04 0.71 5.10 -3.83 -0.02 0.69 16 15 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 16 C -0.12 -1.48 6.01 -26.56 -0.16 -1.64 16 17 C -0.10 -1.49 5.36 -26.61 -0.14 -1.63 16 18 C 0.15 2.65 1.78 -68.88 -0.12 2.53 16 19 H 0.11 2.05 4.66 -51.93 -0.24 1.80 16 20 C 0.20 3.60 5.31 -155.45 -0.83 2.77 16 21 N -0.28 -5.65 11.77 32.70 0.38 -5.27 16 22 N -0.30 -5.78 12.21 32.76 0.40 -5.38 16 23 C 0.16 2.68 7.75 -155.31 -1.20 1.48 16 24 N -0.46 -7.57 3.11 -110.86 -0.35 -7.91 16 25 C 0.10 1.39 6.62 -4.01 -0.03 1.36 16 26 C -0.14 -1.53 5.94 -26.49 -0.16 -1.69 16 27 C -0.12 -1.16 5.96 -26.42 -0.16 -1.32 16 28 C -0.03 -0.36 6.34 -27.60 -0.17 -0.53 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 31 H 0.09 1.63 8.06 -51.93 -0.42 1.21 16 32 H 0.09 1.81 6.66 -51.93 -0.35 1.47 16 33 H 0.07 1.29 6.00 -51.93 -0.31 0.97 16 34 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.11 1.80 7.77 -51.93 -0.40 1.40 16 43 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -30.66 372.61 -10.28 -40.94 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -7.47 Total: 14.79 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -3.50 Total: 2.53 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: 0.03 Total: -64.84 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.06 Total: -14.07 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.66 -10.28 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108858341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.094 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds