Wall clock time and date at job start Tue Mar 31 2020 18:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47110 * 270.00100 * 3 2 1 5 5 H 1.48500 * 109.46854 * 30.00113 * 3 2 1 6 6 H 1.48501 * 109.47425 * 149.99528 * 3 2 1 7 7 C 1.38955 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99742 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99972 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00158 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00040 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47091 * 179.97438 * 12 10 9 14 14 C 1.46856 * 110.99619 * 293.95260 * 13 12 10 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 12 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 18 18 C 1.46846 * 111.00121 * 58.16143 * 13 12 10 19 19 H 1.09004 * 109.45906 * 294.16468 * 18 13 12 20 20 C 1.50696 * 109.46446 * 54.14284 * 18 13 12 21 21 N 1.30838 * 126.46219 * 44.68583 * 20 18 13 22 22 N 1.28910 * 109.74141 * 179.82983 * 21 20 18 23 23 C 1.29834 * 109.47722 * 0.39186 * 22 21 20 24 24 N 1.34695 * 126.46963 * 225.00203 * 20 18 13 25 25 C 1.46252 * 128.84165 * 0.09886 * 24 20 18 26 26 C 1.53325 * 108.72927 * 162.93483 * 25 24 20 27 27 C 1.53143 * 109.58430 * 50.26908 * 26 25 24 28 28 C 1.50799 * 128.52247 * 179.89062 * 23 22 21 29 29 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00270 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47108 * 59.99639 * 12 10 9 32 32 H 1.09002 * 109.47016 * 299.99547 * 12 10 9 33 33 H 1.09000 * 109.46462 * 65.82793 * 14 13 12 34 34 H 1.09001 * 109.45242 * 305.84772 * 14 13 12 35 35 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 36 36 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 37 37 H 1.08994 * 109.52349 * 177.58253 * 16 15 14 38 38 H 1.08997 * 109.52263 * 297.77214 * 16 15 14 39 39 H 1.08997 * 109.49417 * 182.41991 * 17 16 15 40 40 H 1.09007 * 109.52297 * 62.34418 * 17 16 15 41 41 H 1.08996 * 109.59975 * 282.71075 * 25 24 20 42 42 H 1.09004 * 109.59584 * 43.16630 * 25 24 20 43 43 H 1.08999 * 109.45212 * 290.23015 * 26 25 24 44 44 H 1.09005 * 109.43018 * 170.29235 * 26 25 24 45 45 H 1.09001 * 109.49189 * 170.61825 * 27 26 25 46 46 H 1.08997 * 109.52662 * 50.52699 * 27 26 25 47 47 H 1.08999 * 109.72853 * 283.69337 * 28 23 22 48 48 H 1.08997 * 109.73233 * 44.32792 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1986 -5.9795 0.0017 14 6 2.9646 -6.0177 -1.2506 15 6 3.8410 -7.2720 -1.2759 16 6 4.7917 -7.2498 -0.0758 17 6 3.9695 -7.1605 1.2139 18 6 3.0894 -5.9095 1.1671 19 1 3.7206 -5.0242 1.0890 20 6 2.2644 -5.8285 2.4256 21 7 1.2105 -6.5488 2.7121 22 7 0.7582 -6.2164 3.8726 23 6 1.4948 -5.2696 4.3693 24 7 2.4694 -4.9968 3.4651 25 6 3.5114 -3.9854 3.6390 26 6 3.0851 -3.0266 4.7570 27 6 2.6654 -3.8309 5.9908 28 6 1.3506 -4.5647 5.6946 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6183 -4.9209 -0.8897 32 1 0.6163 -4.9205 0.8903 33 1 3.5963 -5.1319 -1.3172 34 1 2.2770 -6.0379 -2.0962 35 1 3.2091 -8.1586 -1.2233 36 1 4.4205 -7.2924 -2.1989 37 1 5.3878 -8.1622 -0.0664 38 1 5.4500 -6.3842 -0.1486 39 1 4.6414 -7.1009 2.0701 40 1 3.3397 -8.0453 1.3065 41 1 4.4493 -4.4697 3.9106 42 1 3.6400 -3.4296 2.7102 43 1 2.2456 -2.4211 4.4155 44 1 3.9208 -2.3759 5.0148 45 1 2.5231 -3.1554 6.8342 46 1 3.4410 -4.5575 6.2331 47 1 0.5321 -3.8468 5.6423 48 1 1.1505 -5.2941 6.4795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108858341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:38 Heat of formation + Delta-G solvation = 18.458709 kcal Electronic energy + Delta-G solvation = -31115.636821 eV Core-core repulsion = 27205.420840 eV Total energy + Delta-G solvation = -3910.215980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.33815 -41.12789 -38.97875 -38.15803 -36.05285 -34.85278 -34.37706 -33.33877 -32.61736 -31.49855 -29.54191 -28.91738 -26.59448 -25.51129 -24.88247 -24.08408 -23.64927 -22.07970 -21.27096 -20.67246 -20.38890 -19.80037 -18.11809 -17.70156 -17.65587 -16.91276 -16.50634 -16.27071 -15.92432 -15.79219 -15.68590 -15.46968 -15.23226 -15.06842 -15.00624 -14.71202 -14.24444 -14.11092 -13.67273 -13.54026 -13.38534 -13.18278 -13.03356 -12.74307 -12.62315 -12.48141 -12.21120 -12.17167 -12.16218 -12.05593 -11.90430 -11.62179 -11.57078 -11.48829 -11.37545 -11.26734 -11.04394 -10.99714 -10.07563 -9.95602 -9.05300 -8.50473 -6.01716 0.82486 1.31778 1.37687 1.49745 1.52603 1.82085 1.91228 2.23392 2.84850 3.12433 3.13631 3.16436 3.38508 3.50495 3.69226 3.72583 3.88008 4.00079 4.07235 4.13572 4.15516 4.26428 4.32103 4.36747 4.40941 4.44403 4.50709 4.58016 4.65398 4.75739 4.80140 4.82124 4.85330 4.93870 5.02433 5.04253 5.05397 5.09907 5.18939 5.20457 5.23119 5.27311 5.34672 5.50392 5.82761 5.90812 5.97383 6.08833 6.48909 7.03488 7.44779 7.76137 7.96510 8.64927 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.005647 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.634312 B = 4957.260689 C = 6900.294408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.328 4.328 8 H 0.086 0.914 9 N -0.566 5.566 10 C 0.414 3.586 11 O -0.609 6.609 12 C 0.051 3.949 13 N -0.492 5.492 14 C 0.043 3.957 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.097 4.097 18 C 0.157 3.843 19 H 0.084 0.916 20 C 0.187 3.813 21 N -0.311 5.311 22 N -0.337 5.337 23 C 0.170 3.830 24 N -0.464 5.464 25 C 0.097 3.903 26 C -0.131 4.131 27 C -0.112 4.112 28 C -0.034 4.034 29 H 0.277 0.723 30 H 0.390 0.610 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.528 -8.150 8.581 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.458 4.458 8 H 0.104 0.896 9 N -0.201 5.201 10 C 0.201 3.799 11 O -0.498 6.498 12 C -0.081 4.081 13 N -0.215 5.215 14 C -0.085 4.085 15 C -0.145 4.145 16 C -0.149 4.149 17 C -0.136 4.136 18 C 0.047 3.953 19 H 0.102 0.898 20 C -0.082 4.082 21 N -0.151 5.151 22 N -0.177 5.177 23 C -0.098 4.098 24 N -0.154 5.154 25 C -0.025 4.025 26 C -0.169 4.169 27 C -0.150 4.150 28 C -0.073 4.073 29 H 0.087 0.913 30 H 0.223 0.777 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.830 -9.459 8.464 14.914 hybrid contribution 0.614 2.724 -0.381 2.818 sum 8.444 -6.735 8.084 13.491 Atomic orbital electron populations 1.69695 1.07146 1.29386 1.49851 1.26094 0.96391 1.02613 0.96105 0.84941 0.78066 0.76801 0.78659 1.19861 1.19823 1.19049 1.19664 0.92720 0.83569 1.49813 0.89631 1.42145 1.09153 1.05205 1.63605 1.21691 0.88721 0.86424 0.83041 1.90341 1.14575 1.87355 1.57490 1.21981 0.95813 0.86761 1.03580 1.62366 1.17608 1.38970 1.02544 1.22331 0.96740 0.99088 0.90312 1.21563 0.97217 0.96855 0.98865 1.21554 0.97403 1.02739 0.93227 1.21563 0.97086 0.95783 0.99175 1.20292 0.91162 1.01119 0.82752 0.89837 1.24655 0.98064 0.92283 0.93229 1.74401 1.09070 1.23741 1.07912 1.73955 1.24828 1.14155 1.04732 1.25452 0.88799 0.98361 0.97211 1.46117 1.25146 1.29289 1.14895 1.22248 0.89587 0.88883 1.01739 1.21950 1.03529 0.97407 0.94011 1.21691 0.95733 0.99693 0.97865 1.20484 1.00566 0.98934 0.87347 0.91303 0.77721 0.87761 0.90935 0.94185 0.90574 0.90746 0.89546 0.88985 0.92569 0.91233 0.91290 0.87185 0.91060 0.92710 0.86475 0.86702 0.89990 0.88655 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 41.18 29.55 68.60 2.03 43.21 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.33 -17.78 9.68 84.04 0.81 -16.97 16 8 H 0.09 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -28.82 5.29 -306.98 -1.62 -30.44 16 10 C 0.41 19.26 7.19 87.66 0.63 19.89 16 11 O -0.61 -29.84 11.20 -3.07 -0.03 -29.87 16 12 C 0.05 2.04 5.45 85.56 0.47 2.51 16 13 N -0.49 -17.67 4.68 -880.02 -4.12 -21.79 16 14 C 0.04 1.37 5.10 86.32 0.44 1.81 16 15 C -0.11 -2.62 6.09 30.65 0.19 -2.43 16 16 C -0.11 -2.64 6.01 30.70 0.18 -2.45 16 17 C -0.10 -2.74 5.36 30.67 0.16 -2.58 16 18 C 0.16 5.52 1.78 44.19 0.08 5.60 16 19 H 0.08 3.34 4.66 -2.38 -0.01 3.33 16 20 C 0.19 6.96 5.31 138.14 0.73 7.69 16 21 N -0.31 -12.79 11.77 -50.46 -0.59 -13.38 16 22 N -0.34 -13.23 12.21 -50.28 -0.61 -13.84 16 23 C 0.17 5.53 7.75 138.14 1.07 6.60 16 24 N -0.46 -15.44 3.11 -504.67 -1.57 -17.01 16 25 C 0.10 2.69 6.62 86.54 0.57 3.26 16 26 C -0.13 -2.79 5.94 30.75 0.18 -2.61 16 27 C -0.11 -1.76 5.96 30.80 0.18 -1.57 16 28 C -0.03 -0.72 6.34 30.03 0.19 -0.53 16 29 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.39 19.97 7.90 -92.71 -0.73 19.24 16 31 H 0.10 3.84 8.06 -2.39 -0.02 3.82 16 32 H 0.07 3.16 6.66 -2.39 -0.02 3.14 16 33 H 0.04 1.53 6.00 -2.39 -0.01 1.51 16 34 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.07 2.50 7.77 -2.39 -0.02 2.48 16 43 H 0.05 1.46 8.12 -2.39 -0.02 1.44 16 44 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 47 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 48 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.16 372.61 0.36 -68.80 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: 0.25 Total: 45.38 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.36 Total: 18.05 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -8.24 Total: -145.56 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.03 Total: -29.87 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -69.16 0.36 -68.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108858341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.258 kcal (2) G-P(sol) polarization free energy of solvation -69.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds