Wall clock time and date at job start Tue Mar 31 2020 18:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00075 * 2 1 4 4 H 1.48506 * 109.46872 * 270.00261 * 3 2 1 5 5 H 1.48498 * 109.47572 * 30.00006 * 3 2 1 6 6 H 1.48502 * 109.47391 * 150.00253 * 3 2 1 7 7 C 1.37881 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99189 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00218 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97528 * 125.00266 * 10 9 7 12 12 C 1.35250 * 107.85621 * 179.70600 * 11 10 9 13 13 C 1.40396 * 107.86685 * 0.42872 * 12 11 10 14 14 N 1.40199 * 125.97221 * 179.82911 * 13 12 11 15 15 C 1.34775 * 119.99965 * 359.71705 * 14 13 12 16 16 O 1.21595 * 119.99614 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00271 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00216 * 179.97438 * 17 15 14 19 19 C 1.53120 * 109.52425 * 85.12516 * 18 17 15 20 20 C 1.53166 * 109.20873 * 177.56375 * 19 18 17 21 21 N 1.46845 * 109.55463 * 300.85535 * 20 19 18 22 22 C 1.46900 * 111.00045 * 185.84196 * 21 20 19 23 23 C 1.52995 * 117.50216 * 124.41429 * 22 21 20 24 24 C 1.52997 * 60.00053 * 252.50795 * 23 22 21 25 25 C 1.46848 * 111.19518 * 61.74755 * 21 20 19 26 26 C 1.53037 * 109.52381 * 298.25146 * 25 21 20 27 27 N 1.31209 * 108.05778 * 359.56265 * 13 12 11 28 28 H 0.97002 * 119.99717 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47439 * 60.00159 * 9 7 2 30 30 H 1.08999 * 109.47572 * 299.99787 * 9 7 2 31 31 H 1.07999 * 126.07343 * 359.97438 * 11 10 9 32 32 H 1.08002 * 126.06324 * 180.25057 * 12 11 10 33 33 H 0.96999 * 119.99688 * 179.71665 * 14 13 12 34 34 H 0.97007 * 119.99432 * 359.97438 * 17 15 14 35 35 H 1.09002 * 109.52172 * 324.99657 * 18 17 15 36 36 H 1.09004 * 109.49930 * 297.56578 * 19 18 17 37 37 H 1.08997 * 109.50353 * 57.67794 * 19 18 17 38 38 H 1.09003 * 109.44926 * 180.83262 * 20 19 18 39 39 H 1.09002 * 109.44150 * 60.87652 * 20 19 18 40 40 H 1.09007 * 115.55160 * 270.12401 * 22 21 20 41 41 H 1.09000 * 117.49984 * 0.02562 * 23 22 21 42 42 H 1.09003 * 117.50208 * 145.01551 * 23 22 21 43 43 H 1.08998 * 117.49681 * 252.50849 * 24 23 22 44 44 H 1.09003 * 117.49956 * 107.48459 * 24 23 22 45 45 H 1.09006 * 109.46097 * 178.23945 * 25 21 20 46 46 H 1.08996 * 109.46046 * 58.26729 * 25 21 20 47 47 H 1.08996 * 109.50616 * 299.24564 * 26 25 21 48 48 H 1.08993 * 109.53667 * 179.13827 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2427 -4.6228 0.8924 12 6 3.2570 -5.4464 0.5429 13 6 3.8678 -4.9149 -0.6040 14 7 4.9631 -5.4657 -1.2840 15 6 5.5275 -6.6064 -0.8403 16 8 5.0870 -7.1574 0.1501 17 7 6.5807 -7.1357 -1.4937 18 6 7.1946 -8.3752 -1.0111 19 6 6.4320 -9.5773 -1.5752 20 6 7.1159 -10.8685 -1.1159 21 7 8.5068 -10.8823 -1.5865 22 6 9.1524 -12.1665 -1.2834 23 6 9.7734 -12.9378 -2.4498 24 6 8.4784 -13.4368 -1.8058 25 6 9.2701 -9.7629 -1.0200 26 6 8.6519 -8.4395 -1.4764 27 7 3.2309 -3.8155 -0.9316 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 1.5793 -4.7529 1.7347 32 1 3.5474 -6.3509 1.0568 33 1 5.3147 -5.0259 -2.0739 34 1 6.9323 -6.6958 -2.2836 35 1 7.1585 -8.3994 0.0781 36 1 5.4043 -9.5590 -1.2124 37 1 6.4350 -9.5316 -2.6642 38 1 6.5847 -11.7268 -1.5275 39 1 7.1003 -10.9199 -0.0272 40 1 9.6545 -12.2240 -0.3175 41 1 9.7033 -12.4921 -3.4420 42 1 10.6843 -13.5026 -2.2515 43 1 8.5373 -14.3300 -1.1839 44 1 7.5558 -13.3196 -2.3744 45 1 10.3036 -9.8181 -1.3621 46 1 9.2443 -9.8197 0.0682 47 1 8.6898 -8.3760 -2.5639 48 1 9.2090 -7.6086 -1.0438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118893686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:12 Heat of formation + Delta-G solvation = 86.048808 kcal Electronic energy + Delta-G solvation = -27696.574043 eV Core-core repulsion = 23789.288990 eV Total energy + Delta-G solvation = -3907.285054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.77169 -40.02970 -39.14490 -36.91616 -34.67817 -34.27882 -33.30031 -31.24970 -31.20129 -30.19479 -29.23342 -26.62407 -24.56026 -23.84249 -22.98069 -22.42451 -21.69016 -21.10250 -20.43954 -20.25065 -19.64587 -17.93082 -17.24084 -16.66813 -16.54733 -15.92281 -15.51886 -15.37696 -15.05201 -14.90057 -14.58514 -14.34125 -14.02689 -13.98901 -13.74184 -13.53194 -12.91490 -12.73857 -12.61858 -12.31746 -12.20115 -11.98414 -11.82298 -11.70135 -11.55481 -11.25108 -11.01920 -10.89622 -10.87024 -10.82077 -10.50664 -10.39381 -10.24112 -10.04042 -9.65401 -9.47283 -9.18730 -8.70893 -8.61680 -8.07115 -7.38388 -6.22723 -4.27626 2.40481 2.69705 3.14271 3.24646 3.27671 3.30346 3.35460 3.40654 3.63076 3.87069 4.26537 4.34381 4.40267 4.50872 4.51916 4.58629 4.70433 4.80312 4.87840 5.01743 5.12330 5.13005 5.22118 5.24760 5.28889 5.38682 5.48043 5.55245 5.56250 5.60515 5.70546 5.78711 5.81549 5.85846 6.01763 6.25809 6.36930 6.57130 6.62574 6.67247 6.72228 6.90092 7.04135 7.14120 7.53087 7.71549 7.85268 8.01266 8.09581 8.63109 8.69346 8.82985 9.37844 10.85918 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.035122 B = 0.001776 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.037651 B =15758.465457 C =16257.751090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.644 5.644 15 C 0.713 3.287 16 O -0.568 6.568 17 N -0.740 5.740 18 C 0.165 3.835 19 C -0.128 4.128 20 C 0.060 3.940 21 N -0.512 5.512 22 C 0.003 3.997 23 C -0.163 4.163 24 C -0.176 4.176 25 C 0.064 3.936 26 C -0.124 4.124 27 N -0.308 5.308 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.406 0.594 34 H 0.396 0.604 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.038 0.962 47 H 0.078 0.922 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.687 -23.975 -3.966 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.318 4.318 13 C 0.022 3.978 14 N -0.294 5.294 15 C 0.413 3.587 16 O -0.443 6.443 17 N -0.396 5.396 18 C 0.060 3.940 19 C -0.168 4.168 20 C -0.068 4.068 21 N -0.237 5.237 22 C -0.106 4.106 23 C -0.201 4.201 24 C -0.213 4.213 25 C -0.064 4.064 26 C -0.162 4.162 27 N -0.140 5.140 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.241 0.759 34 H 0.230 0.770 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.096 0.904 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.940 -23.219 -4.359 29.664 hybrid contribution 0.723 0.697 0.621 1.181 sum 18.663 -22.521 -3.738 29.487 Atomic orbital electron populations 1.69924 1.06027 1.27578 1.49847 1.24948 0.94984 0.99530 0.94646 0.86324 0.79652 0.82154 0.78334 1.20364 1.20998 1.19752 1.21267 0.94007 0.89422 1.51933 0.91314 1.19726 0.85625 0.81310 0.99229 1.49046 1.23333 1.19763 1.18113 1.22553 1.00396 0.90214 0.96793 1.21506 1.02104 1.06266 1.01892 1.18785 0.90669 0.94007 0.94344 1.41402 1.31561 1.25065 1.31355 1.15646 0.80128 0.80030 0.82916 1.90860 1.64264 1.62515 1.26704 1.45102 1.33969 1.27754 1.32740 1.20843 0.91172 0.82242 0.99732 1.22060 0.99849 0.93102 1.01745 1.22077 0.88242 0.98415 0.98063 1.61741 1.01991 1.00937 1.59038 1.22400 1.03243 0.87910 0.97004 1.23061 0.96376 1.02465 0.98179 1.23067 0.97642 0.96557 1.04044 1.21986 0.97636 0.89598 0.97190 1.21877 0.94629 0.97188 1.02543 1.77322 1.03878 1.16408 1.16348 0.92358 0.93772 0.92548 0.81573 0.82221 0.75915 0.76967 0.89451 0.90417 0.90939 0.90328 0.94410 0.89255 0.88159 0.88884 0.88694 0.88251 0.90115 0.94377 0.90362 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.80 9.24 -34.44 -0.32 -15.12 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.26 6.64 6.26 -5.20 -0.03 6.60 16 10 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.80 9.61 -39.83 -0.38 -6.18 16 13 C 0.28 5.63 8.11 -154.36 -1.25 4.38 16 14 N -0.64 -10.08 5.46 -15.51 -0.08 -10.16 16 15 C 0.71 10.45 8.50 -86.92 -0.74 9.71 16 16 O -0.57 -10.19 13.13 5.28 0.07 -10.12 16 17 N -0.74 -7.37 5.09 -58.55 -0.30 -7.67 16 18 C 0.17 1.50 2.52 -67.81 -0.17 1.33 16 19 C -0.13 -1.15 5.68 -26.58 -0.15 -1.30 16 20 C 0.06 0.48 5.34 -3.77 -0.02 0.46 16 21 N -0.51 -3.75 4.80 -226.61 -1.09 -4.84 16 22 C 0.00 0.02 5.30 -67.72 -0.36 -0.34 16 23 C -0.16 -0.93 10.46 -26.74 -0.28 -1.21 16 24 C -0.18 -1.01 9.70 -26.73 -0.26 -1.27 16 25 C 0.06 0.42 5.43 -3.83 -0.02 0.40 16 26 C -0.12 -0.82 5.57 -26.65 -0.15 -0.97 16 27 N -0.31 -7.18 12.42 31.44 0.39 -6.79 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 32 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 33 H 0.41 5.13 8.84 -40.82 -0.36 4.77 16 34 H 0.40 2.85 8.62 -40.82 -0.35 2.49 16 35 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.59 6.68 -51.93 -0.35 0.24 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.55 8.08 -51.92 -0.42 0.13 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.61 7.23 -51.93 -0.38 0.24 16 45 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 46 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -32.82 392.04 -11.64 -44.46 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.59 Total: 6.32 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -4.43 Total: -1.07 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.57 Total: -61.94 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.82 -11.64 -44.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118893686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.510 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds