Wall clock time and date at job start Tue Mar 31 2020 18:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00075 * 2 1 4 4 H 1.48506 * 109.46872 * 270.00261 * 3 2 1 5 5 H 1.48498 * 109.47572 * 30.00006 * 3 2 1 6 6 H 1.48502 * 109.47391 * 150.00253 * 3 2 1 7 7 C 1.37881 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99189 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00218 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97528 * 125.00266 * 10 9 7 12 12 C 1.35250 * 107.85621 * 179.70600 * 11 10 9 13 13 C 1.40396 * 107.86685 * 0.42872 * 12 11 10 14 14 N 1.40199 * 125.97221 * 179.82911 * 13 12 11 15 15 C 1.34775 * 119.99965 * 359.71705 * 14 13 12 16 16 O 1.21595 * 119.99614 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00271 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00216 * 179.97438 * 17 15 14 19 19 C 1.53120 * 109.52425 * 85.12516 * 18 17 15 20 20 C 1.53166 * 109.20873 * 177.56375 * 19 18 17 21 21 N 1.46845 * 109.55463 * 300.85535 * 20 19 18 22 22 C 1.46900 * 111.00045 * 185.84196 * 21 20 19 23 23 C 1.52995 * 117.50216 * 124.41429 * 22 21 20 24 24 C 1.52997 * 60.00053 * 252.50795 * 23 22 21 25 25 C 1.46848 * 111.19518 * 61.74755 * 21 20 19 26 26 C 1.53037 * 109.52381 * 298.25146 * 25 21 20 27 27 N 1.31209 * 108.05778 * 359.56265 * 13 12 11 28 28 H 0.97002 * 119.99717 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47439 * 60.00159 * 9 7 2 30 30 H 1.08999 * 109.47572 * 299.99787 * 9 7 2 31 31 H 1.07999 * 126.07343 * 359.97438 * 11 10 9 32 32 H 1.08002 * 126.06324 * 180.25057 * 12 11 10 33 33 H 0.96999 * 119.99688 * 179.71665 * 14 13 12 34 34 H 0.97007 * 119.99432 * 359.97438 * 17 15 14 35 35 H 1.09002 * 109.52172 * 324.99657 * 18 17 15 36 36 H 1.09004 * 109.49930 * 297.56578 * 19 18 17 37 37 H 1.08997 * 109.50353 * 57.67794 * 19 18 17 38 38 H 1.09003 * 109.44926 * 180.83262 * 20 19 18 39 39 H 1.09002 * 109.44150 * 60.87652 * 20 19 18 40 40 H 1.09007 * 115.55160 * 270.12401 * 22 21 20 41 41 H 1.09000 * 117.49984 * 0.02562 * 23 22 21 42 42 H 1.09003 * 117.50208 * 145.01551 * 23 22 21 43 43 H 1.08998 * 117.49681 * 252.50849 * 24 23 22 44 44 H 1.09003 * 117.49956 * 107.48459 * 24 23 22 45 45 H 1.09006 * 109.46097 * 178.23945 * 25 21 20 46 46 H 1.08996 * 109.46046 * 58.26729 * 25 21 20 47 47 H 1.08996 * 109.50616 * 299.24564 * 26 25 21 48 48 H 1.08993 * 109.53667 * 179.13827 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2427 -4.6228 0.8924 12 6 3.2570 -5.4464 0.5429 13 6 3.8678 -4.9149 -0.6040 14 7 4.9631 -5.4657 -1.2840 15 6 5.5275 -6.6064 -0.8403 16 8 5.0870 -7.1574 0.1501 17 7 6.5807 -7.1357 -1.4937 18 6 7.1946 -8.3752 -1.0111 19 6 6.4320 -9.5773 -1.5752 20 6 7.1159 -10.8685 -1.1159 21 7 8.5068 -10.8823 -1.5865 22 6 9.1524 -12.1665 -1.2834 23 6 9.7734 -12.9378 -2.4498 24 6 8.4784 -13.4368 -1.8058 25 6 9.2701 -9.7629 -1.0200 26 6 8.6519 -8.4395 -1.4764 27 7 3.2309 -3.8155 -0.9316 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 1.5793 -4.7529 1.7347 32 1 3.5474 -6.3509 1.0568 33 1 5.3147 -5.0259 -2.0739 34 1 6.9323 -6.6958 -2.2836 35 1 7.1585 -8.3994 0.0781 36 1 5.4043 -9.5590 -1.2124 37 1 6.4350 -9.5316 -2.6642 38 1 6.5847 -11.7268 -1.5275 39 1 7.1003 -10.9199 -0.0272 40 1 9.6545 -12.2240 -0.3175 41 1 9.7033 -12.4921 -3.4420 42 1 10.6843 -13.5026 -2.2515 43 1 8.5373 -14.3300 -1.1839 44 1 7.5558 -13.3196 -2.3744 45 1 10.3036 -9.8181 -1.3621 46 1 9.2443 -9.8197 0.0682 47 1 8.6898 -8.3760 -2.5639 48 1 9.2090 -7.6086 -1.0438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118893686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:11 Heat of formation + Delta-G solvation = 64.443032 kcal Electronic energy + Delta-G solvation = -27697.510940 eV Core-core repulsion = 23789.288990 eV Total energy + Delta-G solvation = -3908.221950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22747 -41.15272 -40.00741 -37.61608 -36.15382 -35.33440 -35.02801 -32.81437 -31.86412 -31.25541 -30.84369 -28.50862 -25.57933 -24.69451 -24.42257 -22.92405 -22.89269 -21.94445 -21.69607 -21.34190 -20.77484 -19.09799 -18.68649 -18.27845 -17.70809 -17.18048 -16.67777 -16.46933 -16.06040 -15.96456 -15.63067 -15.59911 -15.51913 -14.86153 -14.63373 -14.48624 -14.26717 -14.17099 -13.79172 -13.65849 -13.44172 -13.22776 -12.93476 -12.73955 -12.53348 -12.31818 -12.27654 -12.17618 -12.09439 -11.86265 -11.62318 -11.55159 -11.38596 -11.31613 -11.08486 -10.99792 -10.71579 -10.16203 -9.71372 -9.27430 -9.04246 -8.32108 -6.46366 1.08270 1.15091 1.38619 1.39370 1.50912 1.71666 2.12023 2.36630 2.42499 2.74559 2.94084 2.99318 3.15423 3.70905 3.87534 3.98021 4.03619 4.08711 4.09768 4.26807 4.28447 4.29274 4.40292 4.46526 4.62565 4.67547 4.77304 4.82054 4.84896 4.89282 4.93141 4.94670 4.96063 5.02844 5.08397 5.11704 5.14465 5.18458 5.29721 5.35294 5.55136 5.57903 5.77975 5.90246 5.98964 6.07931 6.19096 6.30337 6.64607 6.78678 7.16776 7.23532 7.45631 8.75284 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.035122 B = 0.001776 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.037651 B =15758.465457 C =16257.751090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.293 4.293 13 C 0.285 3.715 14 N -0.637 5.637 15 C 0.712 3.288 16 O -0.601 6.601 17 N -0.717 5.717 18 C 0.165 3.835 19 C -0.122 4.122 20 C 0.065 3.935 21 N -0.516 5.516 22 C -0.009 4.009 23 C -0.156 4.156 24 C -0.176 4.176 25 C 0.064 3.936 26 C -0.113 4.113 27 N -0.348 5.348 28 H 0.272 0.728 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.200 0.800 32 H 0.166 0.834 33 H 0.421 0.579 34 H 0.414 0.586 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.034 0.966 47 H 0.089 0.911 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.707 -24.468 -4.378 32.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.324 4.324 13 C 0.029 3.971 14 N -0.289 5.289 15 C 0.412 3.588 16 O -0.479 6.479 17 N -0.373 5.373 18 C 0.060 3.940 19 C -0.161 4.161 20 C -0.063 4.063 21 N -0.240 5.240 22 C -0.117 4.117 23 C -0.194 4.194 24 C -0.213 4.213 25 C -0.065 4.065 26 C -0.152 4.152 27 N -0.179 5.179 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.183 0.817 33 H 0.258 0.742 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.052 0.948 47 H 0.107 0.893 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.010 -23.741 -4.814 31.419 hybrid contribution 0.161 0.692 0.739 1.025 sum 20.171 -23.049 -4.075 30.898 Atomic orbital electron populations 1.70001 1.07204 1.28741 1.49963 1.25745 0.95852 1.02719 0.93894 0.85336 0.78336 0.78113 0.78542 1.19781 1.19685 1.19779 1.21410 0.93399 0.91002 1.52798 0.92945 1.19331 0.85684 0.81520 0.98089 1.48811 1.23977 1.20350 1.19555 1.23148 1.00521 0.88847 0.96755 1.21675 1.02225 1.06436 1.02075 1.19084 0.90875 0.92945 0.94149 1.41402 1.30475 1.25384 1.31590 1.15816 0.80725 0.79533 0.82773 1.90833 1.65451 1.63276 1.28344 1.44977 1.32152 1.27614 1.32564 1.20942 0.92820 0.81578 0.98625 1.21955 0.98605 0.93692 1.01826 1.21983 0.88974 0.97859 0.97474 1.61761 1.01591 1.01657 1.59015 1.22492 1.03869 0.87742 0.97604 1.23088 0.96832 1.01992 0.97476 1.23108 0.97535 0.96614 1.04047 1.22037 0.98198 0.89221 0.97008 1.21822 0.92469 0.97709 1.03167 1.77242 1.04974 1.18188 1.17516 0.91855 0.96080 0.92368 0.78292 0.81678 0.74217 0.74907 0.91556 0.92807 0.90425 0.89998 0.95306 0.88920 0.88708 0.87563 0.87681 0.88828 0.88744 0.94801 0.89272 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.41 13.29 21.45 0.28 -52.13 16 2 C 0.02 1.01 5.46 84.65 0.46 1.48 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.55 -31.21 9.24 25.60 0.24 -30.97 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.32 6.26 85.63 0.54 14.86 16 10 N -0.34 -16.48 3.67 -351.85 -1.29 -17.77 16 11 C 0.06 2.26 11.44 83.52 0.96 3.21 16 12 C -0.29 -11.80 9.61 22.11 0.21 -11.59 16 13 C 0.29 11.61 8.11 133.31 1.08 12.69 16 14 N -0.64 -19.48 5.46 -321.23 -1.75 -21.23 16 15 C 0.71 20.31 8.50 179.06 1.52 21.83 16 16 O -0.60 -21.48 13.13 -4.02 -0.05 -21.53 16 17 N -0.72 -13.24 5.09 -457.43 -2.33 -15.57 16 18 C 0.17 2.81 2.52 45.07 0.11 2.93 16 19 C -0.12 -2.11 5.68 30.69 0.17 -1.94 16 20 C 0.07 0.99 5.34 86.37 0.46 1.45 16 21 N -0.52 -6.77 4.80 -870.85 -4.18 -10.96 16 22 C -0.01 -0.10 5.30 44.91 0.24 0.14 16 23 C -0.16 -1.48 10.46 30.59 0.32 -1.16 16 24 C -0.18 -1.77 9.70 30.59 0.30 -1.47 16 25 C 0.06 0.72 5.43 86.33 0.47 1.19 16 26 C -0.11 -1.25 5.57 30.65 0.17 -1.08 16 27 N -0.35 -16.42 12.42 -54.44 -0.68 -17.10 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 31 H 0.20 6.39 8.06 -2.91 -0.02 6.37 16 32 H 0.17 6.52 5.91 -2.91 -0.02 6.51 16 33 H 0.42 10.17 8.84 -92.71 -0.82 9.35 16 34 H 0.41 4.97 8.62 -92.70 -0.80 4.17 16 35 H 0.07 1.46 7.58 -2.39 -0.02 1.44 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.18 6.68 -2.39 -0.02 1.17 16 39 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.09 1.00 8.08 -2.38 -0.02 0.98 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 1.05 7.23 -2.39 -0.02 1.04 16 45 H 0.09 0.85 8.12 -2.38 -0.02 0.83 16 46 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -70.99 392.04 -1.36 -72.34 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.63 Total: 26.54 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.25 Total: 11.57 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -9.94 Total: -134.76 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.99 -1.36 -72.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118893686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.786 kcal (2) G-P(sol) polarization free energy of solvation -70.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds