Wall clock time and date at job start Tue Mar 31 2020 17:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46503 * 120.00132 * 2 1 4 4 C 1.52997 * 109.47196 * 275.00151 * 3 2 1 5 5 C 1.53000 * 109.47021 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47135 * 180.02562 * 5 4 3 7 7 C 1.46963 * 110.99595 * 46.18010 * 6 5 4 8 8 C 1.53056 * 109.35944 * 183.16796 * 7 6 5 9 9 N 1.46956 * 109.38342 * 301.62902 * 8 7 6 10 10 C 1.46899 * 111.00293 * 183.17592 * 9 8 7 11 11 C 1.46962 * 110.87987 * 59.31148 * 9 8 7 12 12 C 1.46956 * 111.00102 * 169.99994 * 6 5 4 13 13 S 1.65605 * 120.00307 * 180.02562 * 2 1 3 14 14 O 1.42097 * 104.27387 * 26.06926 * 13 2 1 15 15 O 1.42095 * 104.27827 * 153.92633 * 13 2 1 16 16 C 1.81395 * 104.44838 * 269.99916 * 13 2 1 17 17 C 1.53001 * 109.47367 * 179.97438 * 16 13 2 18 18 C 1.50691 * 109.47644 * 180.02562 * 17 16 13 19 19 H 1.08009 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00440 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99766 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00231 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47297 * 89.99548 * 22 20 18 24 24 H 1.48500 * 109.47236 * 210.00148 * 22 20 18 25 25 H 1.48510 * 109.47043 * 329.99703 * 22 20 18 26 26 H 1.09004 * 109.47451 * 89.99733 * 1 2 3 27 27 H 1.09009 * 109.47176 * 209.99385 * 1 2 3 28 28 H 1.09000 * 109.47207 * 329.99409 * 1 2 3 29 29 H 1.09004 * 109.47404 * 155.00153 * 3 2 1 30 30 H 1.09001 * 109.46848 * 35.00258 * 3 2 1 31 31 H 1.09005 * 109.46676 * 60.00190 * 4 3 2 32 32 H 1.08991 * 109.47259 * 299.99750 * 4 3 2 33 33 H 1.08994 * 109.47126 * 60.00297 * 5 4 3 34 34 H 1.09001 * 109.47223 * 300.00230 * 5 4 3 35 35 H 1.08992 * 109.47287 * 63.21185 * 7 6 5 36 36 H 1.08994 * 109.50466 * 303.13858 * 7 6 5 37 37 H 1.09002 * 109.48813 * 181.65179 * 8 7 6 38 38 H 1.09002 * 109.48870 * 61.61068 * 8 7 6 39 39 H 1.09006 * 109.46670 * 60.00118 * 10 9 8 40 40 H 1.09000 * 109.47249 * 179.97438 * 10 9 8 41 41 H 1.08993 * 109.47127 * 300.00706 * 10 9 8 42 42 H 1.09001 * 109.48625 * 60.64585 * 11 9 8 43 43 H 1.09003 * 109.48941 * 180.69193 * 11 9 8 44 44 H 1.09002 * 109.48806 * 56.84348 * 12 6 5 45 45 H 1.09003 * 109.49203 * 296.77991 * 12 6 5 46 46 H 1.09002 * 109.47034 * 299.99938 * 16 13 2 47 47 H 1.08999 * 109.47571 * 59.99993 * 16 13 2 48 48 H 1.09009 * 109.46710 * 300.00017 * 17 16 13 49 49 H 1.09004 * 109.46974 * 59.99224 * 17 16 13 50 50 H 0.96998 * 120.00438 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 6 3.1080 3.0986 -1.4369 6 7 3.2478 3.5834 -2.8165 7 6 1.9721 3.4879 -3.5400 8 6 2.1781 3.9269 -4.9917 9 7 2.6932 5.3030 -5.0168 10 6 2.8331 5.7878 -6.3964 11 6 3.9689 5.3979 -4.2934 12 6 3.7629 4.9595 -2.8416 13 16 2.2930 -1.4341 -0.0006 14 8 1.3970 -2.3558 -0.6062 15 8 3.5394 -1.1188 -0.6058 16 6 2.5194 -1.8269 1.7558 17 6 3.2809 -3.1471 1.8892 18 6 3.4684 -3.4737 3.3483 19 1 3.0833 -2.8061 4.1049 20 6 4.1316 -4.6248 3.7175 21 7 4.6001 -5.4380 2.7962 22 14 4.3647 -5.0293 5.5262 23 1 3.2133 -5.8353 6.0055 24 1 5.6191 -5.8042 5.7025 25 1 4.4470 -3.7696 6.3085 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 3.1858 1.1177 0.4343 30 1 1.6501 2.0043 0.5895 31 1 1.3552 1.9244 -1.8712 32 1 2.8909 1.0378 -2.0264 33 1 4.0963 2.9480 -1.0025 34 1 2.5603 3.8340 -0.8475 35 1 1.2357 4.1361 -3.0651 36 1 1.6178 2.4574 -3.5185 37 1 1.2271 3.8849 -5.5227 38 1 2.8939 3.2617 -5.4747 39 1 1.8604 5.7696 -6.8882 40 1 3.2155 6.8084 -6.3859 41 1 3.5264 5.1451 -6.9388 42 1 4.7053 4.7494 -4.7681 43 1 4.3237 6.4284 -4.3156 44 1 4.7139 5.0015 -2.3106 45 1 3.0469 5.6247 -2.3590 46 1 3.0866 -1.0296 2.2361 47 1 1.5452 -1.9197 2.2358 48 1 2.7132 -3.9442 1.4089 49 1 4.2551 -3.0548 1.4089 50 1 5.0670 -6.2476 3.0558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121454155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:58 Heat of formation + Delta-G solvation = -63.145781 kcal Electronic energy + Delta-G solvation = -27235.977750 eV Core-core repulsion = 23425.374334 eV Total energy + Delta-G solvation = -3810.603416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.67698 -37.18893 -36.59073 -35.70021 -35.34916 -33.88438 -31.99901 -31.16313 -31.13645 -28.63668 -26.51796 -25.59972 -24.68875 -24.04732 -23.15563 -21.52228 -21.16876 -19.98811 -18.46739 -17.51916 -16.70059 -16.51354 -15.96510 -15.64450 -15.44566 -15.32586 -15.19585 -15.01013 -14.71233 -14.55496 -14.21630 -14.01461 -13.72887 -13.33986 -12.88442 -12.79119 -12.56329 -12.51366 -12.46690 -12.00350 -11.92457 -11.78803 -11.74877 -11.58642 -11.55201 -11.41704 -11.31736 -11.08318 -11.04779 -10.95753 -10.85313 -10.59398 -10.40552 -10.37285 -9.76620 -9.34060 -8.78825 -8.76406 -8.50856 -8.50476 -6.12428 -4.18062 0.76986 3.02952 3.25822 3.32027 3.34730 3.55962 3.63932 4.30892 4.39694 4.52502 4.58425 4.66183 4.67292 4.74729 4.90115 4.97774 5.03870 5.11878 5.15780 5.19448 5.20232 5.22588 5.27329 5.34365 5.43528 5.48330 5.49073 5.50487 5.57345 5.58783 5.63231 5.67833 5.73289 5.73748 5.79294 5.90336 6.15875 6.21402 6.49460 6.58986 6.61649 6.67474 6.84941 6.87999 7.30225 7.36330 7.80440 8.17681 8.85301 9.46607 10.98572 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.002117 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.729658 B =13223.288504 C =13549.975880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.010 6.010 3 C 0.129 3.871 4 C -0.145 4.145 5 C 0.060 3.940 6 N -0.540 5.540 7 C 0.051 3.949 8 C 0.055 3.945 9 N -0.547 5.547 10 C 0.025 3.975 11 C 0.056 3.944 12 C 0.057 3.943 13 S 2.590 3.410 14 O -0.964 6.964 15 O -0.960 6.960 16 C -0.591 4.591 17 C 0.028 3.972 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.033 0.967 49 H 0.033 0.967 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 23.306 -12.193 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.846 5.846 3 C 0.003 3.997 4 C -0.184 4.184 5 C -0.069 4.069 6 N -0.265 5.265 7 C -0.077 4.077 8 C -0.073 4.073 9 N -0.272 5.272 10 C -0.123 4.123 11 C -0.072 4.072 12 C -0.071 4.071 13 S 2.688 3.312 14 O -0.955 6.955 15 O -0.950 6.950 16 C -0.724 4.724 17 C -0.011 4.011 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.166 22.706 -13.031 26.896 hybrid contribution 0.021 -0.069 1.599 1.601 sum -6.145 22.637 -11.432 26.094 Atomic orbital electron populations 1.21385 0.78919 1.02676 1.01842 1.57725 1.14862 1.21587 1.90462 1.21157 0.96790 0.85279 0.96521 1.22202 1.00733 0.97225 0.98240 1.22060 1.00964 0.95488 0.88342 1.62178 1.27643 1.21534 1.15110 1.22282 0.90640 1.01484 0.93319 1.22203 1.00099 0.88198 0.96804 1.62180 1.27748 1.22365 1.14918 1.22342 1.01365 1.00090 0.88518 1.22174 0.90301 1.00786 0.93954 1.22149 1.00303 0.88480 0.96170 1.05807 0.73663 0.72532 0.79240 1.93536 1.64868 1.62019 1.75031 1.93545 1.43810 1.82718 1.74928 1.30492 1.10144 1.10612 1.21122 1.18962 0.94991 0.87188 0.99975 1.21003 1.37147 1.06995 0.90825 0.92072 1.25076 0.95314 0.96123 0.98028 1.69952 1.37311 1.12624 1.32922 0.86465 0.77735 0.78491 0.84554 1.20473 1.20996 1.19780 0.92873 0.91005 0.91491 0.89842 0.90789 0.91430 0.89757 0.90024 0.94692 0.94085 0.89385 0.90351 0.93796 0.91363 0.91418 0.95518 0.93834 0.90371 0.90104 0.94042 0.86337 0.86381 0.94895 0.94829 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 10.24 59.84 0.61 1.66 16 2 N -1.01 -13.30 3.12 -121.76 -0.38 -13.68 16 3 C 0.13 1.42 5.28 -4.04 -0.02 1.40 16 4 C -0.14 -1.59 4.80 -26.73 -0.13 -1.72 16 5 C 0.06 0.58 5.28 -3.82 -0.02 0.56 16 6 N -0.54 -5.46 4.86 -234.46 -1.14 -6.60 16 7 C 0.05 0.48 4.93 -3.76 -0.02 0.46 16 8 C 0.06 0.48 5.62 -3.76 -0.02 0.46 16 9 N -0.55 -4.70 4.97 -242.75 -1.21 -5.91 16 10 C 0.03 0.17 9.60 60.06 0.58 0.74 16 11 C 0.06 0.46 5.62 -3.76 -0.02 0.44 16 12 C 0.06 0.49 5.58 -3.77 -0.02 0.47 16 13 S 2.59 46.62 5.32 -107.50 -0.57 46.05 16 14 O -0.96 -20.08 17.09 -57.54 -0.98 -21.06 16 15 O -0.96 -19.63 16.75 -57.54 -0.96 -20.59 16 16 C -0.59 -11.31 6.12 37.16 0.23 -11.08 16 17 C 0.03 0.71 4.98 -27.89 -0.14 0.58 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.78 7.79 -51.92 -0.40 0.38 16 28 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 29 H 0.08 0.95 7.61 -51.93 -0.40 0.55 16 30 H 0.07 0.62 7.96 -51.93 -0.41 0.20 16 31 H 0.07 0.67 6.26 -51.93 -0.33 0.35 16 32 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.84 5.99 -51.93 -0.31 0.53 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 41 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 47 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 48 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 49 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -34.71 404.69 -12.21 -46.92 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -9.40 Total: -2.38 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 0.62 Total: -19.24 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -1.99 Total: -51.99 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.95 Total: -41.65 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 46.62 SS G_CDS: -0.57 Total: 46.05 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.71 -12.21 -46.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121454155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.229 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds