Wall clock time and date at job start Tue Mar 31 2020 17:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46503 * 120.00132 * 2 1 4 4 C 1.52997 * 109.47196 * 275.00151 * 3 2 1 5 5 C 1.53000 * 109.47021 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47135 * 180.02562 * 5 4 3 7 7 C 1.46963 * 110.99595 * 46.18010 * 6 5 4 8 8 C 1.53056 * 109.35944 * 183.16796 * 7 6 5 9 9 N 1.46956 * 109.38342 * 301.62902 * 8 7 6 10 10 C 1.46899 * 111.00293 * 183.17592 * 9 8 7 11 11 C 1.46962 * 110.87987 * 59.31148 * 9 8 7 12 12 C 1.46956 * 111.00102 * 169.99994 * 6 5 4 13 13 S 1.65605 * 120.00307 * 180.02562 * 2 1 3 14 14 O 1.42097 * 104.27387 * 26.06926 * 13 2 1 15 15 O 1.42095 * 104.27827 * 153.92633 * 13 2 1 16 16 C 1.81395 * 104.44838 * 269.99916 * 13 2 1 17 17 C 1.53001 * 109.47367 * 179.97438 * 16 13 2 18 18 C 1.50691 * 109.47644 * 180.02562 * 17 16 13 19 19 H 1.08009 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00440 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99766 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00231 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47297 * 89.99548 * 22 20 18 24 24 H 1.48500 * 109.47236 * 210.00148 * 22 20 18 25 25 H 1.48510 * 109.47043 * 329.99703 * 22 20 18 26 26 H 1.09004 * 109.47451 * 89.99733 * 1 2 3 27 27 H 1.09009 * 109.47176 * 209.99385 * 1 2 3 28 28 H 1.09000 * 109.47207 * 329.99409 * 1 2 3 29 29 H 1.09004 * 109.47404 * 155.00153 * 3 2 1 30 30 H 1.09001 * 109.46848 * 35.00258 * 3 2 1 31 31 H 1.09005 * 109.46676 * 60.00190 * 4 3 2 32 32 H 1.08991 * 109.47259 * 299.99750 * 4 3 2 33 33 H 1.08994 * 109.47126 * 60.00297 * 5 4 3 34 34 H 1.09001 * 109.47223 * 300.00230 * 5 4 3 35 35 H 1.08992 * 109.47287 * 63.21185 * 7 6 5 36 36 H 1.08994 * 109.50466 * 303.13858 * 7 6 5 37 37 H 1.09002 * 109.48813 * 181.65179 * 8 7 6 38 38 H 1.09002 * 109.48870 * 61.61068 * 8 7 6 39 39 H 1.09006 * 109.46670 * 60.00118 * 10 9 8 40 40 H 1.09000 * 109.47249 * 179.97438 * 10 9 8 41 41 H 1.08993 * 109.47127 * 300.00706 * 10 9 8 42 42 H 1.09001 * 109.48625 * 60.64585 * 11 9 8 43 43 H 1.09003 * 109.48941 * 180.69193 * 11 9 8 44 44 H 1.09002 * 109.48806 * 56.84348 * 12 6 5 45 45 H 1.09003 * 109.49203 * 296.77991 * 12 6 5 46 46 H 1.09002 * 109.47034 * 299.99938 * 16 13 2 47 47 H 1.08999 * 109.47571 * 59.99993 * 16 13 2 48 48 H 1.09009 * 109.46710 * 300.00017 * 17 16 13 49 49 H 1.09004 * 109.46974 * 59.99224 * 17 16 13 50 50 H 0.96998 * 120.00438 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 6 3.1080 3.0986 -1.4369 6 7 3.2478 3.5834 -2.8165 7 6 1.9721 3.4879 -3.5400 8 6 2.1781 3.9269 -4.9917 9 7 2.6932 5.3030 -5.0168 10 6 2.8331 5.7878 -6.3964 11 6 3.9689 5.3979 -4.2934 12 6 3.7629 4.9595 -2.8416 13 16 2.2930 -1.4341 -0.0006 14 8 1.3970 -2.3558 -0.6062 15 8 3.5394 -1.1188 -0.6058 16 6 2.5194 -1.8269 1.7558 17 6 3.2809 -3.1471 1.8892 18 6 3.4684 -3.4737 3.3483 19 1 3.0833 -2.8061 4.1049 20 6 4.1316 -4.6248 3.7175 21 7 4.6001 -5.4380 2.7962 22 14 4.3647 -5.0293 5.5262 23 1 3.2133 -5.8353 6.0055 24 1 5.6191 -5.8042 5.7025 25 1 4.4470 -3.7696 6.3085 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 3.1858 1.1177 0.4343 30 1 1.6501 2.0043 0.5895 31 1 1.3552 1.9244 -1.8712 32 1 2.8909 1.0378 -2.0264 33 1 4.0963 2.9480 -1.0025 34 1 2.5603 3.8340 -0.8475 35 1 1.2357 4.1361 -3.0651 36 1 1.6178 2.4574 -3.5185 37 1 1.2271 3.8849 -5.5227 38 1 2.8939 3.2617 -5.4747 39 1 1.8604 5.7696 -6.8882 40 1 3.2155 6.8084 -6.3859 41 1 3.5264 5.1451 -6.9388 42 1 4.7053 4.7494 -4.7681 43 1 4.3237 6.4284 -4.3156 44 1 4.7139 5.0015 -2.3106 45 1 3.0469 5.6247 -2.3590 46 1 3.0866 -1.0296 2.2361 47 1 1.5452 -1.9197 2.2358 48 1 2.7132 -3.9442 1.4089 49 1 4.2551 -3.0548 1.4089 50 1 5.0670 -6.2476 3.0558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121454155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:57 Heat of formation + Delta-G solvation = -90.323722 kcal Electronic energy + Delta-G solvation = -27237.156274 eV Core-core repulsion = 23425.374334 eV Total energy + Delta-G solvation = -3811.781940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37036 -38.26595 -37.96945 -36.95988 -36.44673 -35.89290 -33.12811 -32.79671 -31.84285 -29.34245 -27.65050 -27.28461 -25.46457 -24.80593 -23.98340 -23.37977 -21.97691 -20.69156 -19.82943 -19.04186 -18.29738 -17.58149 -17.14193 -16.97917 -16.54287 -16.32794 -16.02466 -15.88751 -15.84885 -15.74062 -15.14665 -15.04308 -14.77927 -14.59291 -14.43781 -13.82437 -13.71191 -13.50049 -13.35359 -13.23716 -13.15187 -13.05885 -12.93133 -12.78732 -12.69436 -12.58167 -12.55203 -12.31033 -12.24344 -12.21406 -12.12401 -11.80245 -11.70941 -11.66264 -11.38582 -11.13779 -10.65319 -9.93934 -9.42857 -9.21808 -8.26358 -6.40759 -0.69008 1.40551 1.42641 1.53755 1.77966 2.37797 2.85709 2.91712 2.98209 3.06748 3.21358 3.69555 3.86338 3.95169 4.04568 4.08275 4.11652 4.18561 4.23461 4.32071 4.39833 4.43041 4.52232 4.58909 4.61197 4.65876 4.66829 4.72818 4.75114 4.79561 4.84218 4.89855 4.95379 4.99135 5.00829 5.03591 5.05951 5.25567 5.26049 5.29710 5.31439 5.67748 5.70317 5.95935 5.96345 6.05681 6.15901 6.19150 6.72979 7.29441 8.85873 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.002117 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.729658 B =13223.288504 C =13549.975880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.998 5.998 3 C 0.121 3.879 4 C -0.140 4.140 5 C 0.064 3.936 6 N -0.559 5.559 7 C 0.054 3.946 8 C 0.056 3.944 9 N -0.555 5.555 10 C 0.025 3.975 11 C 0.057 3.943 12 C 0.058 3.942 13 S 2.611 3.389 14 O -0.997 6.997 15 O -0.990 6.990 16 C -0.589 4.589 17 C 0.020 3.980 18 C -0.539 4.539 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.935 5.935 22 Si 0.976 3.024 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.257 1.257 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.022 0.978 42 H 0.030 0.970 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.004 0.996 49 H 0.005 0.995 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 25.929 -10.672 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.837 5.837 3 C -0.005 4.005 4 C -0.179 4.179 5 C -0.064 4.064 6 N -0.284 5.284 7 C -0.074 4.074 8 C -0.072 4.072 9 N -0.280 5.280 10 C -0.123 4.123 11 C -0.072 4.072 12 C -0.069 4.069 13 S 2.708 3.292 14 O -0.987 6.987 15 O -0.980 6.980 16 C -0.720 4.720 17 C -0.019 4.019 18 C -0.578 4.578 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.574 5.574 22 Si 0.799 3.201 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.181 1.181 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.023 0.977 49 H 0.024 0.976 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.507 25.337 -11.504 28.821 hybrid contribution 0.401 -0.804 1.036 1.371 sum -7.106 24.533 -10.468 27.603 Atomic orbital electron populations 1.21710 0.76840 1.04519 1.02786 1.57303 1.15961 1.20452 1.89992 1.21470 0.97119 0.84778 0.97106 1.22128 1.01036 0.96986 0.97783 1.22000 1.00772 0.95121 0.88529 1.62171 1.28208 1.22598 1.15469 1.22242 0.90436 1.01183 0.93579 1.22193 1.00272 0.88236 0.96522 1.62229 1.27851 1.21918 1.15963 1.22392 1.01817 1.00499 0.87582 1.22201 0.89938 1.01401 0.93622 1.22178 1.00568 0.87684 0.96519 1.04858 0.72952 0.73160 0.78247 1.93486 1.65539 1.64199 1.75477 1.93501 1.45778 1.83435 1.75301 1.30386 1.10657 1.07723 1.23266 1.18818 0.94156 0.89961 0.98949 1.21521 1.36846 1.07367 0.92044 0.90560 1.26154 0.94933 0.96054 1.03283 1.70105 1.38405 1.13303 1.35594 0.85288 0.77724 0.78787 0.78301 1.19567 1.20861 1.18071 0.92515 0.91299 0.87519 0.90356 0.86650 0.90257 0.93330 0.90546 0.92702 0.93738 0.89986 0.89211 0.95361 0.90603 0.90301 0.95915 0.95175 0.88765 0.89483 0.93779 0.84090 0.84167 0.97742 0.97635 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.24 127.77 1.31 2.91 16 2 N -1.00 -24.43 3.12 -539.13 -1.68 -26.11 16 3 C 0.12 2.37 5.28 86.38 0.46 2.82 16 4 C -0.14 -2.89 4.80 30.59 0.15 -2.74 16 5 C 0.06 1.13 5.28 86.30 0.46 1.59 16 6 N -0.56 -10.78 4.86 -895.70 -4.35 -15.13 16 7 C 0.05 0.95 4.93 86.31 0.43 1.37 16 8 C 0.06 0.95 5.62 86.31 0.49 1.43 16 9 N -0.55 -8.82 4.97 -921.91 -4.58 -13.40 16 10 C 0.02 0.30 9.60 127.69 1.23 1.53 16 11 C 0.06 0.86 5.62 86.31 0.49 1.35 16 12 C 0.06 0.93 5.58 86.31 0.48 1.41 16 13 S 2.61 94.61 5.32 -56.49 -0.30 94.31 16 14 O -1.00 -42.34 17.09 -127.65 -2.18 -44.53 16 15 O -0.99 -41.67 16.75 -127.65 -2.14 -43.81 16 16 C -0.59 -22.32 6.12 71.98 0.44 -21.88 16 17 C 0.02 1.06 4.98 29.85 0.15 1.21 16 18 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 19 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 20 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 21 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 22 Si 0.98 43.34 29.54 68.60 2.03 45.37 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.07 1.35 7.79 -2.38 -0.02 1.33 16 28 H 0.11 1.18 7.94 -2.39 -0.02 1.16 16 29 H 0.08 1.65 7.61 -2.39 -0.02 1.63 16 30 H 0.12 1.39 7.96 -2.39 -0.02 1.37 16 31 H 0.08 1.43 6.26 -2.38 -0.01 1.42 16 32 H 0.05 1.36 7.90 -2.39 -0.02 1.34 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 0.77 8.08 -2.39 -0.02 0.75 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.51 5.99 -2.39 -0.01 1.50 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 41 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 47 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 48 H 0.00 0.24 8.14 -2.38 -0.02 0.23 16 49 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 50 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -77.35 404.69 -5.29 -82.64 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.87 Total: 16.35 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 6.75 Total: -38.67 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -10.33 Total: -111.67 kcal Atomic # 8 Polarization: -84.02 SS G_CDS: -4.32 Total: -88.34 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 94.61 SS G_CDS: -0.30 Total: 94.31 kcal Total: -77.35 -5.29 -82.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121454155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.683 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds