Wall clock time and date at job start Tue Mar 31 2020 18:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48501 * 109.46935 * 270.00146 * 3 2 1 5 5 H 1.48493 * 109.47024 * 29.99813 * 3 2 1 6 6 H 1.48501 * 109.47124 * 150.00126 * 3 2 1 7 7 C 1.37875 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99833 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.34961 * 125.97739 * 125.00097 * 10 9 7 12 12 C 1.35247 * 107.86007 * 179.69830 * 11 10 9 13 13 C 1.40400 * 107.86686 * 0.43345 * 12 11 10 14 14 N 1.40189 * 125.97481 * 179.82293 * 13 12 11 15 15 C 1.34780 * 119.99788 * 359.71876 * 14 13 12 16 16 O 1.21588 * 119.99860 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99802 * 180.02562 * 15 14 13 18 18 C 1.47486 * 125.59495 * 0.03254 * 17 15 14 19 19 C 1.54320 * 107.03589 * 180.99253 * 18 17 15 20 20 C 1.55153 * 103.10256 * 22.24374 * 19 18 17 21 21 H 1.09004 * 111.00340 * 82.48020 * 20 19 18 22 22 N 1.46895 * 111.00617 * 206.29364 * 20 19 18 23 23 C 1.48533 * 110.99992 * 177.39184 * 22 20 19 24 24 C 1.54943 * 103.22606 * 159.72532 * 23 22 20 25 25 C 1.54599 * 102.92033 * 322.58352 * 24 23 22 26 26 C 1.47900 * 111.00173 * 294.78988 * 22 20 19 27 27 C 1.47426 * 125.64708 * 180.02562 * 17 15 14 28 28 N 1.31209 * 108.05291 * 359.55997 * 13 12 11 29 29 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47066 * 59.99573 * 9 7 2 31 31 H 1.08998 * 109.46802 * 299.99657 * 9 7 2 32 32 H 1.08006 * 126.06882 * 359.97438 * 11 10 9 33 33 H 1.07996 * 126.06558 * 180.24956 * 12 11 10 34 34 H 0.97002 * 120.00426 * 179.71445 * 14 13 12 35 35 H 1.08998 * 110.02731 * 61.63260 * 18 17 15 36 36 H 1.08997 * 109.96615 * 300.32080 * 18 17 15 37 37 H 1.08996 * 110.72168 * 263.79109 * 19 18 17 38 38 H 1.09006 * 110.71820 * 140.69440 * 19 18 17 39 39 H 1.09006 * 110.66952 * 278.15855 * 23 22 20 40 40 H 1.08999 * 110.66985 * 41.29052 * 23 22 20 41 41 H 1.09001 * 110.72588 * 204.22935 * 24 23 22 42 42 H 1.08999 * 110.88098 * 81.01724 * 24 23 22 43 43 H 1.09000 * 110.30872 * 263.04256 * 25 24 23 44 44 H 1.08996 * 110.38844 * 140.91418 * 25 24 23 45 45 H 1.08997 * 109.91466 * 333.50659 * 26 22 20 46 46 H 1.09003 * 109.91779 * 94.60778 * 26 22 20 47 47 H 1.09002 * 110.36896 * 37.08175 * 27 17 15 48 48 H 1.09001 * 110.45497 * 274.81071 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2414 -4.6220 0.8969 12 6 3.2561 -5.4460 0.5497 13 6 3.8687 -4.9154 -0.5968 14 7 4.9650 -5.4668 -1.2747 15 6 5.5287 -6.6071 -0.8291 16 8 5.0867 -7.1572 0.1611 17 7 6.5830 -7.1369 -1.4805 18 6 7.2173 -6.5746 -2.6874 19 6 8.3609 -7.5316 -3.0847 20 6 7.9476 -8.8698 -2.4171 21 1 7.2275 -9.4079 -3.0336 22 7 9.1239 -9.7038 -2.1370 23 6 8.7344 -10.9572 -1.4415 24 6 9.9387 -11.8964 -1.7025 25 6 10.3478 -11.5399 -3.1502 26 6 9.7843 -10.1270 -3.3909 27 6 7.2924 -8.3734 -1.1044 28 7 3.2322 -3.8164 -0.9263 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.5767 -4.7513 1.7383 33 1 3.5458 -6.3499 1.0648 34 1 5.3178 -5.0277 -2.0644 35 1 7.6203 -5.5852 -2.4709 36 1 6.4888 -6.5117 -3.4957 37 1 9.3132 -7.1804 -2.6875 38 1 8.4133 -7.6411 -4.1680 39 1 8.6083 -10.7811 -0.3732 40 1 7.8234 -11.3703 -1.8746 41 1 9.6351 -12.9411 -1.6337 42 1 10.7527 -11.6864 -1.0088 43 1 9.9077 -12.2475 -3.8528 44 1 11.4333 -11.5360 -3.2479 45 1 9.0582 -10.1503 -4.2034 46 1 10.5931 -9.4383 -3.6354 47 1 6.5881 -9.1152 -0.7277 48 1 8.0560 -8.1618 -0.3559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173368849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:46 Heat of formation + Delta-G solvation = 71.833608 kcal Electronic energy + Delta-G solvation = -27948.498964 eV Core-core repulsion = 24040.597494 eV Total energy + Delta-G solvation = -3907.901471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83765 -40.13739 -39.16138 -37.16094 -34.69202 -33.39910 -32.73446 -30.89864 -30.39965 -29.31940 -29.20827 -28.09483 -26.53872 -24.09943 -22.87114 -22.37194 -21.54876 -20.88182 -20.56539 -20.12409 -19.20906 -17.98613 -17.19675 -16.60607 -16.52683 -16.29565 -15.62265 -15.47822 -14.95085 -14.68859 -14.40127 -14.26903 -14.06980 -13.86454 -13.38719 -13.29566 -13.06310 -12.84287 -12.66379 -12.59512 -12.27975 -12.17289 -11.81531 -11.75430 -11.70845 -11.52459 -11.27114 -11.21118 -11.02309 -11.01015 -10.87646 -10.39950 -10.23738 -10.05218 -9.66013 -9.46382 -8.93424 -8.82973 -8.61093 -8.06554 -7.37756 -6.22157 -4.27038 2.25802 2.68589 3.12667 3.25153 3.30797 3.34517 3.38448 3.57373 3.86386 3.92233 4.18020 4.20128 4.28398 4.35520 4.45786 4.49081 4.66390 4.82797 4.88258 5.00614 5.06392 5.12908 5.18985 5.26631 5.34211 5.38307 5.41183 5.45672 5.53123 5.56655 5.61163 5.63213 5.73345 5.73547 5.85051 5.91281 6.33467 6.38117 6.57322 6.59091 6.71425 6.85453 7.02844 7.13218 7.52311 7.71851 7.83172 7.97492 8.09885 8.60079 8.69418 8.83429 9.38427 10.86469 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.001918 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.073829 B =14597.379377 C =15260.748621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.641 5.641 15 C 0.733 3.267 16 O -0.565 6.565 17 N -0.636 5.636 18 C 0.096 3.904 19 C -0.119 4.119 20 C 0.059 3.941 21 H 0.061 0.939 22 N -0.506 5.506 23 C 0.031 3.969 24 C -0.124 4.124 25 C -0.132 4.132 26 C 0.037 3.963 27 C 0.140 3.860 28 N -0.308 5.308 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.406 0.594 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.535 -22.462 -7.332 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.022 3.978 14 N -0.291 5.291 15 C 0.434 3.566 16 O -0.440 6.440 17 N -0.376 5.376 18 C -0.027 4.027 19 C -0.157 4.157 20 C -0.051 4.051 21 H 0.079 0.921 22 N -0.231 5.231 23 C -0.097 4.097 24 C -0.162 4.162 25 C -0.170 4.170 26 C -0.091 4.091 27 C 0.016 3.984 28 N -0.139 5.139 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.154 -21.312 -7.061 29.512 hybrid contribution 0.000 0.171 -0.493 0.522 sum 19.154 -21.141 -7.554 29.511 Atomic orbital electron populations 1.69919 1.06026 1.27575 1.49868 1.24945 0.94984 0.99530 0.94655 0.86326 0.79672 0.82158 0.78328 1.20372 1.21000 1.19731 1.21270 0.94009 0.89405 1.51905 0.91305 1.19733 0.85619 0.81308 0.99241 1.49047 1.23256 1.19796 1.18132 1.22549 1.00365 0.90175 0.96765 1.21509 1.02078 1.06301 1.01890 1.18776 0.90590 0.94045 0.94389 1.41359 1.31427 1.24890 1.31381 1.15061 0.78970 0.80196 0.82377 1.90870 1.64096 1.62543 1.26472 1.47470 1.32323 1.27489 1.30315 1.22152 0.95155 0.97938 0.87490 1.22637 0.98771 0.93514 1.00822 1.22984 0.91493 0.94314 0.96267 0.92120 1.64749 1.23139 1.15832 1.19380 1.23296 0.96941 0.89217 1.00214 1.22477 0.98113 0.98972 0.96608 1.22405 1.01500 0.95998 0.97136 1.22840 0.98704 0.96268 0.91251 1.21922 0.95306 0.85305 0.95819 1.77319 1.03845 1.16328 1.16419 0.92362 0.93761 0.92528 0.81508 0.82226 0.75906 0.90843 0.91223 0.89233 0.90111 0.89512 0.93442 0.90999 0.90574 0.91535 0.90904 0.93649 0.90097 0.90396 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 13.29 55.43 0.74 -24.76 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.83 9.24 -34.44 -0.32 -15.15 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.66 6.26 -5.19 -0.03 6.63 16 10 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 11 C 0.05 1.06 11.43 -17.24 -0.20 0.86 16 12 C -0.29 -5.93 9.61 -39.83 -0.38 -6.31 16 13 C 0.28 5.78 8.11 -154.37 -1.25 4.53 16 14 N -0.64 -10.72 5.41 -15.51 -0.08 -10.80 16 15 C 0.73 11.79 8.46 -86.91 -0.74 11.06 16 16 O -0.56 -10.85 13.73 5.29 0.07 -10.78 16 17 N -0.64 -7.50 3.34 -175.88 -0.59 -8.09 16 18 C 0.10 0.79 6.18 -2.81 -0.02 0.77 16 19 C -0.12 -0.77 5.99 -24.90 -0.15 -0.91 16 20 C 0.06 0.44 2.35 -65.58 -0.15 0.29 16 21 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 22 N -0.51 -3.53 5.15 -219.96 -1.13 -4.66 16 23 C 0.03 0.20 5.99 -1.89 -0.01 0.18 16 24 C -0.12 -0.63 7.06 -24.87 -0.18 -0.81 16 25 C -0.13 -0.63 6.93 -25.37 -0.18 -0.80 16 26 C 0.04 0.21 6.11 -2.75 -0.02 0.19 16 27 C 0.14 1.40 5.94 -2.54 -0.02 1.39 16 28 N -0.31 -7.27 12.42 31.44 0.39 -6.88 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 30 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 32 H 0.17 2.80 8.06 -52.48 -0.42 2.38 16 33 H 0.16 3.26 5.91 -52.49 -0.31 2.95 16 34 H 0.41 5.67 7.81 -40.82 -0.32 5.36 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.05 0.30 8.01 -51.93 -0.42 -0.11 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 0.25 7.74 -51.93 -0.40 -0.16 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -33.17 388.46 -11.47 -44.64 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.74 Total: 3.27 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -3.73 Total: 3.52 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.91 Total: -63.02 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.17 -11.47 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173368849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.476 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds