Wall clock time and date at job start Tue Mar 31 2020 18:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48501 * 109.46935 * 270.00146 * 3 2 1 5 5 H 1.48493 * 109.47024 * 29.99813 * 3 2 1 6 6 H 1.48501 * 109.47124 * 150.00126 * 3 2 1 7 7 C 1.37875 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99833 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.34961 * 125.97739 * 125.00097 * 10 9 7 12 12 C 1.35247 * 107.86007 * 179.69830 * 11 10 9 13 13 C 1.40400 * 107.86686 * 0.43345 * 12 11 10 14 14 N 1.40189 * 125.97481 * 179.82293 * 13 12 11 15 15 C 1.34780 * 119.99788 * 359.71876 * 14 13 12 16 16 O 1.21588 * 119.99860 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99802 * 180.02562 * 15 14 13 18 18 C 1.47486 * 125.59495 * 0.03254 * 17 15 14 19 19 C 1.54320 * 107.03589 * 180.99253 * 18 17 15 20 20 C 1.55153 * 103.10256 * 22.24374 * 19 18 17 21 21 H 1.09004 * 111.00340 * 82.48020 * 20 19 18 22 22 N 1.46895 * 111.00617 * 206.29364 * 20 19 18 23 23 C 1.48533 * 110.99992 * 177.39184 * 22 20 19 24 24 C 1.54943 * 103.22606 * 159.72532 * 23 22 20 25 25 C 1.54599 * 102.92033 * 322.58352 * 24 23 22 26 26 C 1.47900 * 111.00173 * 294.78988 * 22 20 19 27 27 C 1.47426 * 125.64708 * 180.02562 * 17 15 14 28 28 N 1.31209 * 108.05291 * 359.55997 * 13 12 11 29 29 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47066 * 59.99573 * 9 7 2 31 31 H 1.08998 * 109.46802 * 299.99657 * 9 7 2 32 32 H 1.08006 * 126.06882 * 359.97438 * 11 10 9 33 33 H 1.07996 * 126.06558 * 180.24956 * 12 11 10 34 34 H 0.97002 * 120.00426 * 179.71445 * 14 13 12 35 35 H 1.08998 * 110.02731 * 61.63260 * 18 17 15 36 36 H 1.08997 * 109.96615 * 300.32080 * 18 17 15 37 37 H 1.08996 * 110.72168 * 263.79109 * 19 18 17 38 38 H 1.09006 * 110.71820 * 140.69440 * 19 18 17 39 39 H 1.09006 * 110.66952 * 278.15855 * 23 22 20 40 40 H 1.08999 * 110.66985 * 41.29052 * 23 22 20 41 41 H 1.09001 * 110.72588 * 204.22935 * 24 23 22 42 42 H 1.08999 * 110.88098 * 81.01724 * 24 23 22 43 43 H 1.09000 * 110.30872 * 263.04256 * 25 24 23 44 44 H 1.08996 * 110.38844 * 140.91418 * 25 24 23 45 45 H 1.08997 * 109.91466 * 333.50659 * 26 22 20 46 46 H 1.09003 * 109.91779 * 94.60778 * 26 22 20 47 47 H 1.09002 * 110.36896 * 37.08175 * 27 17 15 48 48 H 1.09001 * 110.45497 * 274.81071 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2414 -4.6220 0.8969 12 6 3.2561 -5.4460 0.5497 13 6 3.8687 -4.9154 -0.5968 14 7 4.9650 -5.4668 -1.2747 15 6 5.5287 -6.6071 -0.8291 16 8 5.0867 -7.1572 0.1611 17 7 6.5830 -7.1369 -1.4805 18 6 7.2173 -6.5746 -2.6874 19 6 8.3609 -7.5316 -3.0847 20 6 7.9476 -8.8698 -2.4171 21 1 7.2275 -9.4079 -3.0336 22 7 9.1239 -9.7038 -2.1370 23 6 8.7344 -10.9572 -1.4415 24 6 9.9387 -11.8964 -1.7025 25 6 10.3478 -11.5399 -3.1502 26 6 9.7843 -10.1270 -3.3909 27 6 7.2924 -8.3734 -1.1044 28 7 3.2322 -3.8164 -0.9263 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.5767 -4.7513 1.7383 33 1 3.5458 -6.3499 1.0648 34 1 5.3178 -5.0277 -2.0644 35 1 7.6203 -5.5852 -2.4709 36 1 6.4888 -6.5117 -3.4957 37 1 9.3132 -7.1804 -2.6875 38 1 8.4133 -7.6411 -4.1680 39 1 8.6083 -10.7811 -0.3732 40 1 7.8234 -11.3703 -1.8746 41 1 9.6351 -12.9411 -1.6337 42 1 10.7527 -11.6864 -1.0088 43 1 9.9077 -12.2475 -3.8528 44 1 11.4333 -11.5360 -3.2479 45 1 9.0582 -10.1503 -4.2034 46 1 10.5931 -9.4383 -3.6354 47 1 6.5881 -9.1152 -0.7277 48 1 8.0560 -8.1618 -0.3559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173368849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:45 Heat of formation + Delta-G solvation = 50.578414 kcal Electronic energy + Delta-G solvation = -27949.420659 eV Core-core repulsion = 24040.597494 eV Total energy + Delta-G solvation = -3908.823165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27796 -41.28885 -40.02895 -38.00490 -36.24391 -35.29124 -33.63941 -32.56178 -31.09152 -30.95458 -29.80545 -28.97064 -28.29227 -25.34424 -24.46801 -22.93218 -22.67313 -21.95958 -21.46371 -21.13877 -20.47915 -19.12807 -18.68028 -18.16157 -17.82281 -17.10631 -16.85578 -16.63707 -16.41122 -15.85973 -15.78382 -15.37082 -14.90749 -14.76407 -14.50663 -14.32738 -14.15126 -14.06776 -13.81190 -13.69579 -13.65177 -13.29646 -13.14538 -12.92184 -12.73350 -12.29378 -12.28828 -12.18999 -12.08863 -12.01325 -11.84707 -11.79025 -11.66072 -11.40629 -11.39249 -11.15502 -10.71770 -9.91335 -9.70071 -9.43867 -9.05557 -8.32286 -6.46396 0.99574 1.07208 1.38569 1.39160 1.50751 1.65785 1.98327 2.35286 2.35664 2.80605 2.99200 2.99563 3.34651 3.61681 3.76802 3.93992 3.99572 4.02789 4.14479 4.22416 4.26442 4.37677 4.39145 4.56205 4.64508 4.66464 4.72298 4.76629 4.85611 4.86688 4.93689 4.94491 4.95755 5.01036 5.02069 5.05725 5.11851 5.14315 5.25383 5.32044 5.35324 5.56916 5.73865 5.85187 5.91352 5.94801 6.05580 6.28737 6.58055 6.67224 7.08286 7.23418 7.32748 8.75173 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.001918 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.073829 B =14597.379377 C =15260.748621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.634 5.634 15 C 0.728 3.272 16 O -0.600 6.600 17 N -0.629 5.629 18 C 0.088 3.912 19 C -0.108 4.108 20 C 0.069 3.931 21 H 0.062 0.938 22 N -0.515 5.515 23 C 0.027 3.973 24 C -0.122 4.122 25 C -0.130 4.130 26 C 0.036 3.964 27 C 0.138 3.862 28 N -0.346 5.346 29 H 0.272 0.728 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.202 0.798 33 H 0.165 0.835 34 H 0.418 0.582 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.316 -22.813 -8.282 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.325 4.325 13 C 0.029 3.971 14 N -0.285 5.285 15 C 0.430 3.570 16 O -0.479 6.479 17 N -0.367 5.367 18 C -0.034 4.034 19 C -0.146 4.146 20 C -0.041 4.041 21 H 0.079 0.921 22 N -0.240 5.240 23 C -0.101 4.101 24 C -0.160 4.160 25 C -0.168 4.168 26 C -0.092 4.092 27 C 0.015 3.985 28 N -0.177 5.177 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.182 0.818 34 H 0.256 0.744 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.987 -21.695 -8.053 31.241 hybrid contribution -0.476 0.141 -0.201 0.535 sum 20.512 -21.554 -8.255 30.878 Atomic orbital electron populations 1.69993 1.07181 1.28748 1.49944 1.25737 0.95858 1.02704 0.93904 0.85341 0.78334 0.78135 0.78558 1.19744 1.19671 1.19822 1.21403 0.93376 0.90985 1.52814 0.92985 1.19355 0.85655 0.81460 0.98181 1.48829 1.23836 1.20381 1.19507 1.23149 1.00406 0.88725 0.96708 1.21670 1.02279 1.06509 1.02072 1.19059 0.90764 0.93081 0.94240 1.41332 1.30465 1.25144 1.31574 1.15217 0.79692 0.79819 0.82309 1.90831 1.65481 1.63379 1.28178 1.47510 1.30841 1.27675 1.30689 1.22463 0.95988 0.98737 0.86234 1.22621 0.97846 0.91969 1.02129 1.22857 0.91684 0.95002 0.94529 0.92066 1.64753 1.22754 1.16121 1.20342 1.23323 0.97528 0.89451 0.99760 1.22471 0.97393 0.99160 0.96938 1.22415 1.01977 0.95636 0.96820 1.22903 0.98819 0.96865 0.90581 1.22018 0.94769 0.84334 0.97397 1.77240 1.04921 1.17980 1.17581 0.91844 0.95974 0.92269 0.78077 0.81788 0.74422 0.90040 0.89947 0.88990 0.87739 0.90289 0.93633 0.90118 0.90836 0.90880 0.90204 0.93198 0.89539 0.91701 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.55 -31.25 9.24 25.60 0.24 -31.01 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.32 6.26 85.64 0.54 14.86 16 10 N -0.34 -16.54 3.67 -351.83 -1.29 -17.83 16 11 C 0.06 2.40 11.43 83.52 0.96 3.35 16 12 C -0.29 -12.15 9.61 22.11 0.21 -11.94 16 13 C 0.28 11.93 8.11 133.32 1.08 13.02 16 14 N -0.63 -20.98 5.41 -321.23 -1.74 -22.71 16 15 C 0.73 23.24 8.46 179.05 1.51 24.75 16 16 O -0.60 -23.26 13.73 -3.99 -0.05 -23.31 16 17 N -0.63 -14.27 3.34 -828.61 -2.77 -17.03 16 18 C 0.09 1.27 6.18 86.64 0.54 1.80 16 19 C -0.11 -1.10 5.99 31.78 0.19 -0.91 16 20 C 0.07 0.92 2.35 46.30 0.11 1.03 16 21 H 0.06 0.83 8.07 -2.38 -0.02 0.81 16 22 N -0.51 -6.35 5.15 -849.81 -4.37 -10.73 16 23 C 0.03 0.32 5.99 86.65 0.52 0.84 16 24 C -0.12 -1.07 7.06 31.80 0.22 -0.84 16 25 C -0.13 -0.96 6.93 31.48 0.22 -0.74 16 26 C 0.04 0.32 6.11 86.45 0.53 0.85 16 27 C 0.14 2.69 5.94 86.85 0.52 3.20 16 28 N -0.35 -16.56 12.42 -54.44 -0.68 -17.24 16 29 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 3.04 8.07 -2.39 -0.02 3.02 16 32 H 0.20 6.50 8.06 -2.91 -0.02 6.47 16 33 H 0.16 6.69 5.91 -2.91 -0.02 6.67 16 34 H 0.42 11.39 7.81 -92.71 -0.72 10.66 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.64 8.14 -2.38 -0.02 0.63 16 39 H 0.08 1.03 8.11 -2.38 -0.02 1.01 16 40 H 0.05 0.55 8.01 -2.39 -0.02 0.53 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 0.41 7.74 -2.39 -0.02 0.39 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.67 388.46 -0.52 -72.19 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.23 Total: 23.10 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 7.84 Total: 19.73 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -10.56 Total: -137.66 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.67 -0.52 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173368849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.768 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds