Wall clock time and date at job start Tue Mar 31 2020 18:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99895 * 2 1 4 4 H 1.48493 * 109.47230 * 269.99719 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00164 * 3 2 1 6 6 H 1.48502 * 109.47019 * 150.00084 * 3 2 1 7 7 C 1.37879 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99507 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00402 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97650 * 125.00548 * 10 9 7 12 12 C 1.35244 * 107.85748 * 179.97438 * 11 10 9 13 13 C 1.40397 * 107.86834 * 359.97438 * 12 11 10 14 14 N 1.40195 * 125.97108 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00168 * 0.02562 * 14 13 12 16 16 O 1.21590 * 119.99656 * 5.20741 * 15 14 13 17 17 N 1.34773 * 119.99787 * 185.21459 * 15 14 13 18 18 C 1.47082 * 120.87967 * 174.99723 * 17 15 14 19 19 C 1.53237 * 108.52421 * 231.16283 * 18 17 15 20 20 N 1.46896 * 109.34241 * 306.17183 * 19 18 17 21 21 C 1.46893 * 111.00358 * 187.25381 * 20 19 18 22 22 C 1.52996 * 109.47390 * 170.00039 * 21 20 19 23 23 C 1.53002 * 117.50043 * 174.99909 * 22 21 20 24 24 C 1.52998 * 117.49881 * 243.62179 * 22 21 20 25 25 C 1.46908 * 111.26722 * 63.10048 * 20 19 18 26 26 C 1.47082 * 120.88408 * 354.97980 * 17 15 14 27 27 N 1.31207 * 108.05344 * 0.26486 * 13 12 11 28 28 H 0.97003 * 120.00471 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46895 * 59.99937 * 9 7 2 30 30 H 1.09006 * 109.47069 * 300.00245 * 9 7 2 31 31 H 1.08006 * 126.07001 * 359.96718 * 11 10 9 32 32 H 1.08004 * 126.06352 * 180.02562 * 12 11 10 33 33 H 0.97003 * 119.99904 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.62511 * 111.45129 * 18 17 15 35 35 H 1.08998 * 109.62772 * 350.87897 * 18 17 15 36 36 H 1.08997 * 109.49387 * 186.20925 * 19 18 17 37 37 H 1.08999 * 109.51203 * 66.14363 * 19 18 17 38 38 H 1.09004 * 109.47262 * 49.99679 * 21 20 19 39 39 H 1.09001 * 109.46930 * 289.99974 * 21 20 19 40 40 H 1.09006 * 115.56390 * 29.31104 * 22 21 20 41 41 H 1.09003 * 117.49899 * 359.97438 * 23 22 21 42 42 H 1.09000 * 117.49594 * 214.97700 * 23 22 21 43 43 H 1.09003 * 117.49908 * 145.01709 * 24 22 21 44 44 H 1.08994 * 117.51705 * 359.97438 * 24 22 21 45 45 H 1.08992 * 109.49037 * 56.86092 * 25 20 19 46 46 H 1.09000 * 109.49191 * 176.93674 * 25 20 19 47 47 H 1.09004 * 109.62426 * 248.54446 * 26 17 15 48 48 H 1.08997 * 109.62726 * 9.12245 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 0.0001 11 6 4.8544 -3.1141 -0.8948 12 6 5.0560 -4.4061 -0.5497 13 6 4.2958 -4.6683 0.6012 14 7 4.2253 -5.8928 1.2802 15 6 4.9301 -6.9519 0.8350 16 8 5.6993 -6.8216 -0.0976 17 7 4.7820 -8.1553 1.4234 18 6 5.4570 -9.3465 0.8861 19 6 4.4172 -10.4588 0.7131 20 7 3.7102 -10.6658 1.9840 21 6 2.8265 -11.8369 1.9102 22 6 2.3023 -12.1692 3.3086 23 6 1.2686 -13.2909 3.4274 24 6 2.7023 -13.5175 3.9110 25 6 2.9613 -9.4652 2.3789 26 6 3.9414 -8.3122 2.6202 27 7 3.6581 -3.5687 0.9264 28 1 -0.4851 0.8400 0.0004 29 1 3.8751 -0.6796 0.8895 30 1 3.8745 -0.6807 -0.8905 31 1 5.2985 -2.6041 -1.7369 32 1 5.6900 -5.1110 -1.0672 33 1 3.6698 -5.9776 2.0709 34 1 6.2308 -9.6734 1.5807 35 1 5.9040 -9.1098 -0.0794 36 1 4.9174 -11.3820 0.4206 37 1 3.7024 -10.1722 -0.0582 38 1 3.3835 -12.6883 1.5190 39 1 1.9872 -11.6176 1.2502 40 1 2.2067 -11.3227 3.9886 41 1 0.9616 -13.7918 2.5093 42 1 0.4930 -13.1823 4.1856 43 1 2.8701 -13.5581 4.9873 44 1 3.3386 -14.1682 3.3111 45 1 2.2669 -9.1920 1.5845 46 1 2.4057 -9.6678 3.2944 47 1 4.5696 -8.5398 3.4815 48 1 3.3865 -7.3917 2.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173377976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:55 Heat of formation + Delta-G solvation = 111.709689 kcal Electronic energy + Delta-G solvation = -28064.500132 eV Core-core repulsion = 24158.327817 eV Total energy + Delta-G solvation = -3906.172314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94828 -40.09154 -38.83675 -37.21343 -34.87267 -34.52096 -33.24101 -31.61091 -31.04889 -29.37852 -28.85179 -27.06707 -25.24735 -24.23999 -22.91619 -22.73302 -22.00195 -20.82288 -20.60625 -20.05648 -19.16875 -18.14160 -17.06279 -16.59919 -16.52958 -15.88862 -15.74793 -15.55985 -15.33526 -14.82188 -14.60859 -14.48535 -14.34006 -13.99870 -13.86427 -13.46775 -13.06580 -12.81199 -12.55946 -12.48015 -12.31391 -12.11804 -12.03750 -11.90460 -11.67593 -11.59523 -11.23131 -11.15696 -10.76228 -10.68655 -10.63632 -10.37176 -10.08474 -9.98698 -9.71689 -9.51071 -9.04073 -8.75981 -8.60875 -8.14564 -7.45033 -6.22803 -4.24833 2.28214 2.60375 3.04492 3.15693 3.21460 3.23511 3.25033 3.36187 3.59205 3.80258 4.01046 4.23681 4.25308 4.47287 4.53963 4.60239 4.70075 4.77822 4.89352 4.94741 5.02575 5.05197 5.13903 5.22845 5.26391 5.27850 5.37648 5.40844 5.50906 5.51614 5.55565 5.71803 5.72462 5.75744 5.83239 6.07860 6.27803 6.38722 6.48272 6.56252 6.61949 6.64950 6.74947 6.90385 7.28743 7.44895 7.81587 7.86243 8.35033 8.55231 8.61214 8.87226 9.32365 10.89906 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018791 B = 0.002118 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.715658 B =13216.916410 C =14350.847900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.279 3.721 14 N -0.644 5.644 15 C 0.718 3.282 16 O -0.567 6.567 17 N -0.629 5.629 18 C 0.138 3.862 19 C 0.040 3.960 20 N -0.534 5.534 21 C 0.086 3.914 22 C -0.148 4.148 23 C -0.183 4.183 24 C -0.174 4.174 25 C 0.037 3.963 26 C 0.114 3.886 27 N -0.301 5.301 28 H 0.268 0.732 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.406 0.594 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 -25.105 5.723 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.313 4.313 13 C 0.024 3.976 14 N -0.296 5.296 15 C 0.419 3.581 16 O -0.442 6.442 17 N -0.368 5.368 18 C 0.015 3.985 19 C -0.089 4.089 20 N -0.259 5.259 21 C -0.041 4.041 22 C -0.167 4.167 23 C -0.221 4.221 24 C -0.211 4.211 25 C -0.091 4.091 26 C -0.010 4.010 27 N -0.131 5.131 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.186 0.814 32 H 0.179 0.821 33 H 0.243 0.757 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.061 0.939 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.931 -24.299 6.197 26.301 hybrid contribution -0.256 0.668 -0.674 0.983 sum 7.675 -23.631 5.523 25.453 Atomic orbital electron populations 1.69869 1.06157 1.27274 1.49260 1.24837 0.94876 0.98807 0.94297 0.86903 0.80449 0.83823 0.78909 1.19728 1.20558 1.18848 1.21111 0.87827 0.95672 1.52534 0.89671 1.20032 0.97409 0.73073 0.98157 1.48579 1.32576 1.10145 1.18935 1.22543 0.96015 0.94642 0.96650 1.21517 1.11548 0.96747 1.01533 1.18803 0.98607 0.85942 0.94225 1.41584 1.49242 1.07396 1.31403 1.15503 0.80699 0.79751 0.82113 1.90851 1.39732 1.83002 1.30631 1.47256 1.52131 1.06852 1.30572 1.21555 0.93867 0.82177 1.00922 1.22542 0.96923 0.99316 0.90092 1.61896 1.29367 1.03533 1.31069 1.21664 0.94715 0.93130 0.94613 1.22293 1.03157 0.93078 0.98146 1.22988 0.92806 1.02930 1.03326 1.22989 0.97665 0.99263 1.01150 1.22547 0.95121 0.89896 1.01566 1.21773 0.92980 0.98127 0.88105 1.77376 1.23888 0.95591 1.16279 0.92205 0.94062 0.93356 0.81428 0.82072 0.75676 0.90776 0.88264 0.89368 0.94089 0.90472 0.94286 0.87297 0.88886 0.88732 0.88894 0.88841 0.93922 0.89101 0.90114 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 7 C -0.53 -15.11 9.79 -34.44 -0.34 -15.44 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.23 5.54 5.33 -5.20 -0.03 5.52 16 10 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16 11 C 0.05 0.99 11.44 -17.24 -0.20 0.80 16 12 C -0.28 -5.62 9.61 -39.84 -0.38 -6.00 16 13 C 0.28 5.69 8.11 -154.37 -1.25 4.44 16 14 N -0.64 -10.46 5.37 -15.51 -0.08 -10.54 16 15 C 0.72 11.06 8.27 -86.92 -0.72 10.34 16 16 O -0.57 -10.34 12.97 5.29 0.07 -10.27 16 17 N -0.63 -7.12 3.01 -178.19 -0.54 -7.66 16 18 C 0.14 1.30 6.58 -3.60 -0.02 1.28 16 19 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 20 N -0.53 -4.08 4.63 -234.33 -1.08 -5.16 16 21 C 0.09 0.58 5.24 -3.83 -0.02 0.56 16 22 C -0.15 -0.93 5.66 -90.62 -0.51 -1.44 16 23 C -0.18 -1.03 10.25 -26.73 -0.27 -1.31 16 24 C -0.17 -0.99 10.18 -26.73 -0.27 -1.26 16 25 C 0.04 0.29 5.47 -3.70 -0.02 0.27 16 26 C 0.11 0.98 6.59 -3.60 -0.02 0.95 16 27 N -0.30 -6.98 12.42 31.44 0.39 -6.58 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 30 H 0.05 1.04 7.50 -51.93 -0.39 0.66 16 31 H 0.17 2.60 8.06 -52.48 -0.42 2.17 16 32 H 0.16 3.15 5.93 -52.48 -0.31 2.84 16 33 H 0.41 5.53 6.32 -40.82 -0.26 5.27 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.05 7.10 -51.93 -0.37 0.68 16 36 H 0.09 0.54 7.99 -51.93 -0.41 0.13 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 39 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 40 H 0.11 0.71 6.33 -51.93 -0.33 0.38 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.58 6.12 -51.93 -0.32 0.27 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.67 5.64 -51.93 -0.29 0.38 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -34.17 383.23 -11.04 -45.21 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.27 Total: 6.16 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -4.18 Total: 1.01 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.77 Total: -63.40 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.17 -11.04 -45.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173377976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.916 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds