Wall clock time and date at job start Tue Mar 31 2020 18:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99895 * 2 1 4 4 H 1.48493 * 109.47230 * 269.99719 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00164 * 3 2 1 6 6 H 1.48502 * 109.47019 * 150.00084 * 3 2 1 7 7 C 1.37879 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99507 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00402 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97650 * 125.00548 * 10 9 7 12 12 C 1.35244 * 107.85748 * 179.97438 * 11 10 9 13 13 C 1.40397 * 107.86834 * 359.97438 * 12 11 10 14 14 N 1.40195 * 125.97108 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00168 * 0.02562 * 14 13 12 16 16 O 1.21590 * 119.99656 * 5.20741 * 15 14 13 17 17 N 1.34773 * 119.99787 * 185.21459 * 15 14 13 18 18 C 1.47082 * 120.87967 * 174.99723 * 17 15 14 19 19 C 1.53237 * 108.52421 * 231.16283 * 18 17 15 20 20 N 1.46896 * 109.34241 * 306.17183 * 19 18 17 21 21 C 1.46893 * 111.00358 * 187.25381 * 20 19 18 22 22 C 1.52996 * 109.47390 * 170.00039 * 21 20 19 23 23 C 1.53002 * 117.50043 * 174.99909 * 22 21 20 24 24 C 1.52998 * 117.49881 * 243.62179 * 22 21 20 25 25 C 1.46908 * 111.26722 * 63.10048 * 20 19 18 26 26 C 1.47082 * 120.88408 * 354.97980 * 17 15 14 27 27 N 1.31207 * 108.05344 * 0.26486 * 13 12 11 28 28 H 0.97003 * 120.00471 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46895 * 59.99937 * 9 7 2 30 30 H 1.09006 * 109.47069 * 300.00245 * 9 7 2 31 31 H 1.08006 * 126.07001 * 359.96718 * 11 10 9 32 32 H 1.08004 * 126.06352 * 180.02562 * 12 11 10 33 33 H 0.97003 * 119.99904 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.62511 * 111.45129 * 18 17 15 35 35 H 1.08998 * 109.62772 * 350.87897 * 18 17 15 36 36 H 1.08997 * 109.49387 * 186.20925 * 19 18 17 37 37 H 1.08999 * 109.51203 * 66.14363 * 19 18 17 38 38 H 1.09004 * 109.47262 * 49.99679 * 21 20 19 39 39 H 1.09001 * 109.46930 * 289.99974 * 21 20 19 40 40 H 1.09006 * 115.56390 * 29.31104 * 22 21 20 41 41 H 1.09003 * 117.49899 * 359.97438 * 23 22 21 42 42 H 1.09000 * 117.49594 * 214.97700 * 23 22 21 43 43 H 1.09003 * 117.49908 * 145.01709 * 24 22 21 44 44 H 1.08994 * 117.51705 * 359.97438 * 24 22 21 45 45 H 1.08992 * 109.49037 * 56.86092 * 25 20 19 46 46 H 1.09000 * 109.49191 * 176.93674 * 25 20 19 47 47 H 1.09004 * 109.62426 * 248.54446 * 26 17 15 48 48 H 1.08997 * 109.62726 * 9.12245 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 0.0001 11 6 4.8544 -3.1141 -0.8948 12 6 5.0560 -4.4061 -0.5497 13 6 4.2958 -4.6683 0.6012 14 7 4.2253 -5.8928 1.2802 15 6 4.9301 -6.9519 0.8350 16 8 5.6993 -6.8216 -0.0976 17 7 4.7820 -8.1553 1.4234 18 6 5.4570 -9.3465 0.8861 19 6 4.4172 -10.4588 0.7131 20 7 3.7102 -10.6658 1.9840 21 6 2.8265 -11.8369 1.9102 22 6 2.3023 -12.1692 3.3086 23 6 1.2686 -13.2909 3.4274 24 6 2.7023 -13.5175 3.9110 25 6 2.9613 -9.4652 2.3789 26 6 3.9414 -8.3122 2.6202 27 7 3.6581 -3.5687 0.9264 28 1 -0.4851 0.8400 0.0004 29 1 3.8751 -0.6796 0.8895 30 1 3.8745 -0.6807 -0.8905 31 1 5.2985 -2.6041 -1.7369 32 1 5.6900 -5.1110 -1.0672 33 1 3.6698 -5.9776 2.0709 34 1 6.2308 -9.6734 1.5807 35 1 5.9040 -9.1098 -0.0794 36 1 4.9174 -11.3820 0.4206 37 1 3.7024 -10.1722 -0.0582 38 1 3.3835 -12.6883 1.5190 39 1 1.9872 -11.6176 1.2502 40 1 2.2067 -11.3227 3.9886 41 1 0.9616 -13.7918 2.5093 42 1 0.4930 -13.1823 4.1856 43 1 2.8701 -13.5581 4.9873 44 1 3.3386 -14.1682 3.3111 45 1 2.2669 -9.1920 1.5845 46 1 2.4057 -9.6678 3.2944 47 1 4.5696 -8.5398 3.4815 48 1 3.3865 -7.3917 2.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173377976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:54 Heat of formation + Delta-G solvation = 89.048750 kcal Electronic energy + Delta-G solvation = -28065.482784 eV Core-core repulsion = 24158.327817 eV Total energy + Delta-G solvation = -3907.154966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32941 -41.32079 -39.65626 -37.87816 -36.31839 -35.50899 -35.04810 -33.10863 -32.12732 -30.96519 -29.74249 -28.78293 -26.04751 -25.00803 -24.53962 -23.29054 -23.13690 -22.17008 -21.45424 -21.14407 -20.34709 -19.23630 -19.09288 -18.12745 -17.36633 -17.07206 -16.86821 -16.41222 -16.20532 -16.08252 -15.84070 -15.45644 -15.36016 -15.21486 -14.81571 -14.63017 -14.52826 -14.36017 -13.85724 -13.82055 -13.48702 -13.12291 -13.00355 -12.69229 -12.54413 -12.40520 -12.32531 -12.30804 -12.29299 -11.84142 -11.82841 -11.62751 -11.47955 -11.15130 -11.08433 -10.86601 -10.84845 -9.97809 -9.73445 -9.32889 -9.02127 -8.37121 -6.47226 1.02906 1.07466 1.37049 1.40197 1.49920 1.66078 1.98120 2.29381 2.35067 2.68789 2.76320 2.95477 3.07983 3.71856 3.77772 3.89833 3.95137 4.07228 4.14187 4.15810 4.18921 4.21195 4.32493 4.44848 4.45672 4.61145 4.67916 4.70776 4.73938 4.74442 4.82366 4.83946 4.85073 4.86516 4.93047 5.03327 5.09273 5.12091 5.24647 5.30627 5.34347 5.46485 5.66784 5.90219 5.97121 6.01781 6.03859 6.41486 6.54049 6.60471 7.06173 7.15713 7.32902 8.79936 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018791 B = 0.002118 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.715658 B =13216.916410 C =14350.847900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.062 3.938 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.640 5.640 15 C 0.714 3.286 16 O -0.597 6.597 17 N -0.620 5.620 18 C 0.136 3.864 19 C 0.046 3.954 20 N -0.533 5.533 21 C 0.089 3.911 22 C -0.156 4.156 23 C -0.183 4.183 24 C -0.172 4.172 25 C 0.041 3.959 26 C 0.110 3.890 27 N -0.350 5.350 28 H 0.272 0.728 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.212 0.788 32 H 0.167 0.833 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.026 0.974 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.026 0.974 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 -25.361 5.969 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.126 5.126 11 C -0.086 4.086 12 C -0.325 4.325 13 C 0.028 3.972 14 N -0.294 5.294 15 C 0.415 3.585 16 O -0.476 6.476 17 N -0.358 5.358 18 C 0.013 3.987 19 C -0.082 4.082 20 N -0.258 5.258 21 C -0.038 4.038 22 C -0.174 4.174 23 C -0.221 4.221 24 C -0.209 4.209 25 C -0.087 4.087 26 C -0.012 4.012 27 N -0.180 5.180 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.228 0.772 32 H 0.184 0.816 33 H 0.255 0.745 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.044 0.956 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.044 0.956 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.911 -24.636 6.474 27.333 hybrid contribution -0.920 0.516 -0.724 1.280 sum 8.991 -24.120 5.750 26.376 Atomic orbital electron populations 1.70046 1.08560 1.28788 1.50712 1.25931 0.95791 1.03566 0.93256 0.85607 0.79500 0.77164 0.80053 1.17758 1.20637 1.16234 1.21225 0.90509 0.93702 1.52967 0.95585 1.19891 0.94152 0.74343 0.99652 1.48490 1.34041 1.09986 1.20127 1.23236 0.94305 0.94534 0.96499 1.21706 1.11906 0.97224 1.01652 1.19135 0.97328 0.86475 0.94279 1.41626 1.49616 1.06515 1.31621 1.15677 0.80323 0.80455 0.82010 1.90813 1.41030 1.83661 1.32061 1.47376 1.51792 1.05852 1.30769 1.21717 0.94620 0.81693 1.00642 1.22502 0.96308 0.99584 0.89845 1.61936 1.29506 1.03642 1.30680 1.21669 0.94402 0.92883 0.94879 1.22273 1.03906 0.93361 0.97859 1.23042 0.92951 1.02475 1.03586 1.23046 0.97671 0.98708 1.01427 1.22524 0.94652 0.89751 1.01823 1.21993 0.93136 0.98705 0.87393 1.77293 1.25979 0.96777 1.17998 0.91896 0.93641 0.90020 0.77178 0.81606 0.74474 0.89229 0.89542 0.87103 0.95616 0.89551 0.95016 0.87515 0.88582 0.88429 0.88577 0.88367 0.95579 0.87402 0.88357 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 2 C 0.01 0.75 5.47 84.66 0.46 1.22 16 3 Si 0.96 40.84 27.47 68.60 1.88 42.73 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -9.22 6.54 99.48 0.65 -8.57 16 7 C -0.55 -31.71 9.79 25.60 0.25 -31.46 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 9 C 0.24 11.18 5.33 85.63 0.46 11.63 16 10 N -0.34 -15.70 3.67 -351.84 -1.29 -16.99 16 11 C 0.06 2.35 11.44 83.52 0.96 3.30 16 12 C -0.29 -11.59 9.61 22.10 0.21 -11.38 16 13 C 0.28 11.72 8.11 133.31 1.08 12.80 16 14 N -0.64 -21.02 5.37 -321.23 -1.72 -22.75 16 15 C 0.71 21.97 8.27 179.05 1.48 23.46 16 16 O -0.60 -21.88 12.97 -4.00 -0.05 -21.93 16 17 N -0.62 -13.62 3.01 -835.94 -2.52 -16.14 16 18 C 0.14 2.42 6.58 86.35 0.57 2.99 16 19 C 0.05 0.67 5.62 86.38 0.49 1.15 16 20 N -0.53 -7.28 4.63 -895.29 -4.14 -11.43 16 21 C 0.09 1.05 5.24 86.30 0.45 1.50 16 22 C -0.16 -1.71 5.66 -10.79 -0.06 -1.77 16 23 C -0.18 -1.80 10.25 30.59 0.31 -1.49 16 24 C -0.17 -1.65 10.18 30.59 0.31 -1.34 16 25 C 0.04 0.60 5.47 86.38 0.47 1.07 16 26 C 0.11 1.77 6.59 86.35 0.57 2.34 16 27 N -0.35 -16.60 12.42 -54.44 -0.68 -17.28 16 28 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 30 H 0.08 3.27 7.50 -2.38 -0.02 3.25 16 31 H 0.21 5.81 8.06 -2.91 -0.02 5.79 16 32 H 0.17 6.41 5.93 -2.91 -0.02 6.39 16 33 H 0.42 11.50 6.32 -92.71 -0.59 10.91 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.80 7.10 -2.39 -0.02 1.78 16 36 H 0.11 1.12 7.99 -2.39 -0.02 1.10 16 37 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.87 7.70 -2.38 -0.02 0.85 16 39 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 40 H 0.11 1.22 6.33 -2.38 -0.02 1.20 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 0.85 8.03 -2.39 -0.02 0.83 16 45 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.11 1.22 6.12 -2.39 -0.01 1.21 16 47 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.08 1.32 5.64 -2.39 -0.01 1.31 16 Total: -1.00 -77.36 383.23 0.13 -77.24 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.34 Total: 30.46 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 8.01 Total: 14.02 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -10.05 Total: -142.51 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.88 Total: 42.73 kcal Total: -77.36 0.13 -77.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173377976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.284 kcal (2) G-P(sol) polarization free energy of solvation -77.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds